Wall clock time and date at job start Tue Mar 31 2020 13:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.47511 * 2 1 4 4 C 1.42893 * 114.00025 * 185.36897 * 3 2 1 5 5 C 1.53004 * 110.01649 * 305.35554 * 4 3 2 6 6 N 1.46502 * 109.47218 * 299.00470 * 5 4 3 7 7 S 1.65600 * 120.00268 * 165.06747 * 6 5 4 8 8 O 1.42087 * 106.40470 * 178.26737 * 7 6 5 9 9 O 1.42109 * 106.39960 * 311.18743 * 7 6 5 10 10 N 1.65596 * 107.21739 * 64.72207 * 7 6 5 11 11 C 1.46502 * 120.00239 * 270.00462 * 10 7 6 12 12 C 1.46498 * 119.99837 * 90.00275 * 10 7 6 13 13 C 1.50697 * 109.47283 * 95.00180 * 12 10 7 14 14 H 1.08004 * 120.00186 * 359.97438 * 13 12 10 15 15 C 1.37875 * 120.00586 * 180.02562 * 13 12 10 16 16 N 1.31518 * 119.99564 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00542 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47108 * 89.99891 * 17 15 13 19 19 H 1.48491 * 109.47114 * 209.99805 * 17 15 13 20 20 H 1.48501 * 109.46710 * 329.99836 * 17 15 13 21 21 C 1.54262 * 110.07754 * 66.77620 * 4 3 2 22 22 C 1.54886 * 104.19707 * 95.69503 * 21 4 3 23 23 C 1.54892 * 102.74723 * 37.94594 * 22 21 4 24 24 C 1.53875 * 110.03132 * 183.96986 * 4 3 2 25 25 H 1.09004 * 109.46778 * 60.00147 * 1 2 3 26 26 H 1.08998 * 109.47300 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46982 * 300.00164 * 1 2 3 28 28 H 1.08999 * 109.46982 * 239.99836 * 2 1 3 29 29 H 1.09004 * 109.46778 * 119.99853 * 2 1 3 30 30 H 1.09000 * 109.47078 * 179.00412 * 5 4 3 31 31 H 1.09003 * 109.46884 * 59.00446 * 5 4 3 32 32 H 0.97006 * 119.99889 * 344.79601 * 6 5 4 33 33 H 1.08998 * 109.47483 * 90.00016 * 11 10 7 34 34 H 1.09002 * 109.47308 * 210.00319 * 11 10 7 35 35 H 1.09000 * 109.46911 * 329.99720 * 11 10 7 36 36 H 1.09007 * 109.47196 * 214.99770 * 12 10 7 37 37 H 1.09001 * 109.47456 * 334.99681 * 12 10 7 38 38 H 0.97002 * 119.99916 * 180.02562 * 16 15 13 39 39 H 1.09001 * 110.48499 * 214.37771 * 21 4 3 40 40 H 1.08998 * 110.48494 * 337.01715 * 21 4 3 41 41 H 1.09001 * 110.75594 * 279.62855 * 22 21 4 42 42 H 1.09002 * 110.75701 * 156.25852 * 22 21 4 43 43 H 1.09001 * 110.48155 * 203.38034 * 23 22 21 44 44 H 1.08997 * 110.48834 * 80.73754 * 23 22 21 45 45 H 1.08996 * 110.03243 * 359.94570 * 24 4 3 46 46 H 1.08997 * 110.03790 * 121.38098 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3473 0.0000 4 6 3.4255 1.4619 -0.1221 5 6 4.1133 0.6386 0.9688 6 7 3.7202 1.1470 2.2853 7 16 4.0036 0.2402 3.6416 8 8 3.5525 1.0150 4.7439 9 8 3.5194 -1.0657 3.3595 10 7 5.6458 0.1044 3.8062 11 6 6.3554 -1.0118 3.1763 12 6 6.3890 1.1006 4.5817 13 6 6.5681 0.6063 5.9940 14 1 6.1679 -0.3537 6.2850 15 6 7.2418 1.3800 6.9151 16 7 7.7288 2.5493 6.5610 17 14 7.4632 0.7676 8.6660 18 1 8.7262 -0.0072 8.7634 19 1 7.5209 1.9268 9.5922 20 1 6.3183 -0.1036 9.0340 21 6 3.8781 0.9767 -1.5148 22 6 3.9731 2.2735 -2.3565 23 6 4.5401 3.2981 -1.3427 24 6 3.8465 2.9379 -0.0127 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.1946 0.7180 0.8566 31 1 3.8144 -0.4058 0.8785 32 1 3.2975 2.0167 2.3629 33 1 6.6631 -0.7255 2.1706 34 1 7.2357 -1.2629 3.7679 35 1 5.6953 -1.8774 3.1217 36 1 7.3663 1.2605 4.1262 37 1 5.8354 2.0395 4.5928 38 1 8.2031 3.0935 7.2089 39 1 4.8517 0.4907 -1.4516 40 1 3.1391 0.2985 -1.9412 41 1 2.9873 2.5804 -2.7057 42 1 4.6570 2.1406 -3.1948 43 1 4.2841 4.3140 -1.6436 44 1 5.6206 3.1871 -1.2518 45 1 2.9682 3.5668 0.1327 46 1 4.5407 3.0677 0.8175 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339030215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:05 Heat of formation + Delta-G solvation = -134.282491 kcal Electronic energy + Delta-G solvation = -27036.028835 eV Core-core repulsion = 23280.159656 eV Total energy + Delta-G solvation = -3755.869179 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.99619 -36.58810 -36.09801 -35.49228 -35.13998 -34.49164 -32.42843 -31.19864 -29.08742 -28.46771 -27.77532 -25.08170 -24.60164 -22.90061 -22.28497 -20.79055 -19.84558 -18.84772 -17.53465 -17.05322 -16.68513 -16.35828 -15.88448 -15.75727 -15.25929 -15.07529 -14.66860 -14.22947 -13.90217 -13.61502 -13.35719 -13.27975 -13.00611 -12.79100 -12.47792 -12.29224 -12.15870 -11.83051 -11.71338 -11.62085 -11.56474 -11.44498 -11.28425 -11.20756 -11.15895 -11.06396 -10.97898 -10.73886 -10.69534 -10.54921 -10.49113 -10.02804 -9.76816 -9.52318 -9.25966 -8.44293 -8.06813 -6.06192 -4.10103 1.24996 3.31787 3.38285 3.42953 3.45547 3.65109 4.14404 4.32628 4.38058 4.45481 4.55901 4.89630 4.96077 5.04094 5.09815 5.18639 5.26407 5.29126 5.31549 5.32525 5.38934 5.45635 5.54528 5.59212 5.64949 5.71317 5.79577 5.84393 5.87511 5.91503 5.95423 5.99802 6.03005 6.14889 6.18753 6.29396 6.55263 7.10304 7.21552 7.29241 7.43279 7.61922 7.91425 8.20795 8.92238 9.55146 11.02426 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019029 B = 0.003851 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.065127 B = 7269.230044 C = 7972.618186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.368 6.368 4 C 0.111 3.889 5 C 0.099 3.901 6 N -1.127 6.127 7 S 2.782 3.218 8 O -0.963 6.963 9 O -1.000 7.000 10 N -0.996 5.996 11 C 0.094 3.906 12 C 0.258 3.742 13 C -0.529 4.529 14 H 0.060 0.940 15 C 0.062 3.938 16 N -0.896 5.896 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.149 4.149 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.117 4.117 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.415 0.585 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.035 0.965 37 H 0.038 0.962 38 H 0.263 0.737 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.360 -2.063 -19.488 20.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.287 6.287 4 C 0.070 3.930 5 C -0.029 4.029 6 N -0.887 5.887 7 S 2.790 3.210 8 O -0.947 6.947 9 O -0.983 6.983 10 N -0.839 5.839 11 C -0.052 4.052 12 C 0.136 3.864 13 C -0.569 4.569 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.535 5.535 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.187 4.187 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.155 4.155 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.249 0.751 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.952 -2.312 -18.828 20.569 hybrid contribution 0.542 0.018 0.799 0.966 sum -7.410 -2.294 -18.029 19.627 Atomic orbital electron populations 1.21724 0.93907 1.02166 1.02849 1.22585 0.95377 0.84498 1.00717 1.87976 1.20200 1.26309 1.94237 1.22323 0.81444 0.96245 0.92942 1.21845 0.99456 0.98453 0.83122 1.56127 1.77068 1.34851 1.20640 1.01912 0.73344 0.73190 0.72594 1.93642 1.80439 1.71363 1.49267 1.93509 1.79583 1.39464 1.85794 1.57602 1.26131 1.35837 1.64341 1.21362 0.98783 0.88716 0.96369 1.19043 0.92001 0.85567 0.89815 1.21500 1.35589 1.04608 0.95177 0.92202 1.24930 0.95347 0.94751 0.98980 1.69920 1.37359 1.10983 1.35238 0.86510 0.78477 0.78446 0.84121 1.20621 1.21036 1.19698 1.22960 1.02100 0.98539 0.95145 1.22426 1.01135 0.94618 0.97457 1.22355 1.00120 0.99170 0.94393 1.22217 1.01186 0.93345 0.98736 0.92205 0.91220 0.91804 0.93291 0.92237 0.90883 0.90477 0.75126 0.94454 0.90365 0.91632 0.94742 0.94430 0.92698 0.90355 0.90686 0.91280 0.91499 0.91324 0.91233 0.90127 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.07 16 2 C 0.04 0.50 5.77 37.16 0.21 0.71 16 3 O -0.37 -4.48 9.82 -35.23 -0.35 -4.83 16 4 C 0.11 1.22 0.70 -89.50 -0.06 1.15 16 5 C 0.10 1.23 4.37 -4.04 -0.02 1.21 16 6 N -1.13 -17.11 5.63 -10.61 -0.06 -17.17 16 7 S 2.78 55.40 6.10 -107.50 -0.66 54.75 16 8 O -0.96 -23.41 17.11 -57.17 -0.98 -24.39 16 9 O -1.00 -20.65 16.22 -57.17 -0.93 -21.57 16 10 N -1.00 -20.51 3.23 -123.05 -0.40 -20.91 16 11 C 0.09 1.59 10.68 59.85 0.64 2.23 16 12 C 0.26 6.44 5.08 -5.20 -0.03 6.42 16 13 C -0.53 -14.95 9.38 -34.44 -0.32 -15.27 16 14 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 17 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 21 C -0.15 -1.31 5.88 -25.08 -0.15 -1.46 16 22 C -0.12 -0.95 6.91 -24.74 -0.17 -1.12 16 23 C -0.12 -1.05 6.83 -25.07 -0.17 -1.23 16 24 C -0.12 -1.22 5.57 -25.61 -0.14 -1.36 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.46 6.29 -51.93 -0.33 0.14 16 29 H 0.06 0.77 6.68 -51.93 -0.35 0.42 16 30 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 31 H 0.08 0.96 6.22 -51.93 -0.32 0.64 16 32 H 0.41 5.93 7.86 -34.47 -0.27 5.66 16 33 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 35 H 0.07 1.05 7.02 -51.93 -0.36 0.68 16 36 H 0.03 0.87 8.11 -51.93 -0.42 0.45 16 37 H 0.04 1.00 7.61 -51.93 -0.40 0.60 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.08 0.62 7.84 -51.93 -0.41 0.22 16 40 H 0.07 0.63 6.22 -51.93 -0.32 0.31 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.86 7.95 -51.93 -0.41 0.45 16 46 H 0.08 0.92 7.24 -51.93 -0.38 0.55 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -33.71 375.65 -9.65 -43.36 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.74 Total: 1.72 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 0.08 Total: -8.12 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: 0.28 Total: -63.51 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -2.25 Total: -50.79 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 55.40 SS G_CDS: -0.66 Total: 54.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.71 -9.65 -43.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339030215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.926 kcal (2) G-P(sol) polarization free energy of solvation -33.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds