Wall clock time and date at job start Tue Mar 31 2020 12:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46591 * 2 1 4 4 C 1.53005 * 109.46911 * 239.99762 * 2 1 3 5 5 C 1.50700 * 109.46750 * 174.99677 * 4 2 1 6 6 N 1.30499 * 125.65228 * 305.04263 * 5 4 2 7 7 C 1.34129 * 109.25449 * 179.97438 * 6 5 4 8 8 C 1.34671 * 108.02244 * 359.73194 * 7 6 5 9 9 N 1.35049 * 125.64575 * 125.00171 * 5 4 2 10 10 H 0.97001 * 126.39625 * 0.03039 * 9 5 4 11 11 O 1.42899 * 109.47003 * 119.99641 * 2 1 3 12 12 C 1.42899 * 114.00036 * 269.99847 * 11 2 1 13 13 C 1.50701 * 109.46731 * 180.02562 * 12 11 2 14 14 O 1.21271 * 120.00258 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99735 * 180.02562 * 13 12 11 16 16 C 1.46504 * 120.00163 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.46953 * 89.99935 * 16 15 13 18 18 H 1.08005 * 119.99821 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00156 * 179.97438 * 17 16 15 20 20 N 1.31524 * 119.99586 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00174 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47010 * 60.00376 * 21 19 17 23 23 H 1.48504 * 109.47058 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47111 * 300.00114 * 21 19 17 25 25 C 1.46502 * 120.00039 * 0.02562 * 15 13 12 26 26 C 1.52998 * 109.47480 * 89.99814 * 25 15 13 27 27 C 1.47199 * 109.47271 * 179.97438 * 26 25 15 28 28 N 6.98549 * 85.14266 * 52.41645 * 2 1 3 29 29 H 1.08998 * 109.47311 * 60.00453 * 1 2 3 30 30 H 1.09002 * 109.47085 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47026 * 299.99910 * 1 2 3 32 32 H 1.09000 * 109.47206 * 54.99993 * 4 2 1 33 33 H 1.08996 * 109.47183 * 294.99693 * 4 2 1 34 34 H 1.07998 * 125.98600 * 180.02562 * 7 6 5 35 35 H 1.07996 * 126.59545 * 180.28631 * 8 7 6 36 36 H 1.08996 * 109.47202 * 300.00198 * 12 11 2 37 37 H 1.09000 * 109.47053 * 60.00503 * 12 11 2 38 38 H 1.08992 * 109.47225 * 209.99771 * 16 15 13 39 39 H 1.08998 * 109.46810 * 330.00011 * 16 15 13 40 40 H 0.97001 * 119.99479 * 180.02562 * 20 19 17 41 41 H 1.09005 * 109.47411 * 210.00192 * 25 15 13 42 42 H 1.08997 * 109.46994 * 330.00087 * 25 15 13 43 43 H 1.09000 * 109.47188 * 300.00101 * 26 25 15 44 44 H 1.09006 * 109.46763 * 60.00386 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 7 4.2278 0.4948 -1.2809 7 6 5.5360 0.2086 -1.3574 8 6 5.6659 -1.1297 -1.4337 9 7 4.4009 -1.6523 -1.4113 10 1 4.1657 -2.5924 -1.4540 11 8 2.0063 -0.6736 1.1668 12 6 2.2001 0.1831 2.2940 13 6 2.7014 -0.6281 3.4610 14 8 2.8752 -1.8221 3.3395 15 7 2.9557 -0.0267 4.6400 16 6 3.4425 -0.8152 5.7747 17 6 4.9491 -0.8484 5.7538 18 1 5.4898 -0.3332 4.9736 19 6 5.6371 -1.5355 6.7312 20 7 4.9786 -2.1624 7.6816 21 14 7.5045 -1.5772 6.7049 22 1 8.0319 -0.1924 6.8012 23 1 7.9980 -2.3765 7.8551 24 1 7.9679 -2.1965 5.4373 25 6 2.7442 1.4155 4.7873 26 6 1.3110 1.6757 5.2552 27 6 1.0987 3.1247 5.4038 28 7 0.9385 4.2453 5.5159 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -0.2619 -2.1370 33 1 1.7517 -1.7716 -1.2055 34 1 6.3437 0.9254 -1.3532 35 1 6.5902 -1.6839 -1.5019 36 1 2.9319 0.9514 2.0449 37 1 1.2538 0.6548 2.5588 38 1 3.1020 -0.3614 6.7053 39 1 3.0557 -1.8317 5.7033 40 1 5.4627 -2.6455 8.3695 41 1 3.4442 1.8122 5.5228 42 1 2.9080 1.9066 3.8281 43 1 0.6110 1.2791 4.5198 44 1 1.1472 1.1847 6.2145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344582965.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:27 Heat of formation + Delta-G solvation = 0.770682 kcal Electronic energy + Delta-G solvation = -26910.892910 eV Core-core repulsion = 23057.728877 eV Total energy + Delta-G solvation = -3853.164034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.98324 -39.45294 -37.94144 -36.79136 -35.19849 -33.44181 -32.84581 -32.43422 -30.84365 -29.99284 -28.62511 -26.71243 -26.22804 -24.01512 -22.68714 -21.84821 -21.55437 -20.29989 -18.74323 -18.01953 -17.62943 -17.03979 -16.47157 -16.31161 -15.69633 -15.47287 -15.00866 -14.69406 -14.53740 -14.39830 -14.06057 -13.91778 -13.61943 -13.40059 -13.24705 -12.91110 -12.66226 -12.50566 -12.41705 -12.36705 -12.13218 -11.87936 -11.84123 -11.66370 -11.28073 -11.00365 -10.87659 -10.82249 -10.60892 -10.18939 -10.02723 -9.98860 -9.72639 -9.58960 -8.93986 -8.46577 -8.36130 -7.85567 -6.08464 -4.12901 2.08290 2.71581 2.80516 3.10840 3.17827 3.22164 3.30746 3.32130 3.35116 3.39817 3.88717 4.29905 4.37621 4.43788 4.71696 4.90650 4.94932 5.05392 5.08984 5.13674 5.18198 5.25941 5.26877 5.29919 5.38632 5.41249 5.49797 5.54763 5.55879 5.74971 5.80216 5.82116 6.04242 6.07123 6.13480 6.76352 6.86876 7.20429 7.35005 7.36203 7.44357 7.57526 7.87912 8.09656 8.17380 8.24079 8.84493 8.99161 9.52505 10.99663 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008331 B = 0.004453 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3360.037348 B = 6286.172152 C = 8444.002096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.090 3.910 3 H 0.075 0.925 4 C -0.030 4.030 5 C 0.219 3.781 6 N -0.493 5.493 7 C -0.029 4.029 8 C -0.056 4.056 9 N -0.561 5.561 10 H 0.419 0.581 11 O -0.354 6.354 12 C 0.045 3.955 13 C 0.510 3.490 14 O -0.514 6.514 15 N -0.596 5.596 16 C 0.247 3.753 17 C -0.529 4.529 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.277 1.277 25 C 0.116 3.884 26 C -0.051 4.051 27 C 0.216 3.784 28 N -0.444 5.444 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.168 0.832 35 H 0.175 0.825 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.037 0.963 39 H 0.046 0.954 40 H 0.264 0.736 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.106 0.894 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.309 3.436 -16.907 18.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.030 3.970 3 H 0.093 0.907 4 C -0.069 4.069 5 C -0.045 4.045 6 N -0.214 5.214 7 C -0.177 4.177 8 C -0.190 4.190 9 N -0.163 5.163 10 H 0.256 0.744 11 O -0.272 6.272 12 C -0.035 4.035 13 C 0.295 3.705 14 O -0.388 6.388 15 N -0.330 5.330 16 C 0.128 3.872 17 C -0.568 4.568 18 H 0.076 0.924 19 C -0.139 4.139 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.011 4.011 26 C -0.092 4.092 27 C -0.102 4.102 28 N -0.122 5.122 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.185 0.815 35 H 0.192 0.808 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.093 0.907 43 H 0.124 0.876 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.677 4.942 -16.569 18.918 hybrid contribution 1.533 -1.431 0.070 2.098 sum -6.145 3.510 -16.499 17.953 Atomic orbital electron populations 1.22301 0.95401 1.03093 1.02450 1.22046 0.93240 0.96724 0.84942 0.90682 1.20132 0.85601 1.02921 0.98264 1.23022 0.94306 0.82791 1.04420 1.70139 1.04119 1.26726 1.20366 1.22281 0.93968 0.93792 1.07611 1.22734 0.88268 0.96045 1.11926 1.43225 1.06777 1.10292 1.56007 0.74356 1.88030 1.86464 1.33713 1.18979 1.22414 1.00470 0.93327 0.87321 1.19968 0.78938 0.88237 0.83329 1.90695 1.50845 1.15052 1.82250 1.48163 1.64806 1.07187 1.12849 1.19351 0.94400 0.91832 0.81584 1.21388 0.91403 1.32958 1.11025 0.92438 1.24903 0.98692 0.95023 0.95283 1.69915 1.35772 1.33472 1.14140 0.86579 0.85314 0.78103 0.77568 1.20192 1.21180 1.20233 1.21335 0.93553 0.83487 1.02717 1.19910 1.00644 0.82643 1.06031 1.29150 0.93089 0.95045 0.92875 1.81273 1.08869 1.12713 1.09320 0.91448 0.91533 0.91993 0.87971 0.89451 0.81516 0.80825 0.90715 0.91157 0.94551 0.93551 0.92626 0.88531 0.90739 0.87634 0.86352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 9.53 37.16 0.35 -1.10 16 2 C 0.09 0.98 2.69 -26.73 -0.07 0.91 16 3 H 0.08 0.84 7.71 -51.93 -0.40 0.44 16 4 C -0.03 -0.29 5.55 -27.88 -0.15 -0.45 16 5 C 0.22 2.76 7.20 -155.41 -1.12 1.64 16 6 N -0.49 -7.14 11.15 -10.81 -0.12 -7.27 16 7 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 8 C -0.06 -0.64 12.04 -16.56 -0.20 -0.84 16 9 N -0.56 -6.33 6.15 -10.23 -0.06 -6.39 16 10 H 0.42 3.57 8.96 -40.82 -0.37 3.21 16 11 O -0.35 -5.37 9.27 -55.14 -0.51 -5.88 16 12 C 0.04 0.65 4.78 36.01 0.17 0.82 16 13 C 0.51 9.97 7.75 -10.98 -0.09 9.89 16 14 O -0.51 -12.70 16.08 -14.35 -0.23 -12.93 16 15 N -0.60 -11.20 2.46 -175.06 -0.43 -11.63 16 16 C 0.25 5.92 5.16 -5.19 -0.03 5.89 16 17 C -0.53 -14.32 9.39 -34.44 -0.32 -14.65 16 18 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 21 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 C 0.12 1.57 5.17 -4.04 -0.02 1.55 16 26 C -0.05 -0.53 6.03 -29.52 -0.18 -0.71 16 27 C 0.22 2.62 15.44 -20.71 -0.32 2.30 16 28 N -0.44 -6.55 18.55 42.21 0.78 -5.77 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.07 1.04 7.35 -51.93 -0.38 0.66 16 37 H 0.07 0.77 6.92 -51.93 -0.36 0.42 16 38 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 39 H 0.05 1.27 7.42 -51.93 -0.39 0.89 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.10 1.40 8.07 -51.93 -0.42 0.98 16 42 H 0.07 0.87 6.44 -51.93 -0.33 0.53 16 43 H 0.11 0.89 7.22 -51.93 -0.38 0.52 16 44 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 384.83 15.07 5.80 5.80 Total: -1.00 -36.99 384.83 -7.69 -44.68 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.35 Total: 1.55 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -2.28 Total: 6.32 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.91 Total: -55.96 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.74 Total: -18.81 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.99 -7.69 -44.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344582965.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.452 kcal (2) G-P(sol) polarization free energy of solvation -36.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds