Wall clock time and date at job start Tue Mar 31 2020 12:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.50696 * 109.47344 * 184.99683 * 4 2 1 6 6 N 1.30499 * 125.65016 * 305.02601 * 5 4 2 7 7 C 1.34128 * 109.25615 * 179.97438 * 6 5 4 8 8 C 1.34666 * 108.01987 * 0.02562 * 7 6 5 9 9 N 1.35042 * 125.65022 * 124.71512 * 5 4 2 10 10 H 0.96998 * 126.39710 * 0.02562 * 9 5 4 11 11 O 1.42903 * 109.46726 * 239.99756 * 2 1 3 12 12 C 1.42901 * 113.99972 * 90.00358 * 11 2 1 13 13 C 1.50698 * 109.47395 * 179.97438 * 12 11 2 14 14 O 1.21277 * 119.99651 * 0.02562 * 13 12 11 15 15 N 1.34769 * 120.00315 * 179.97438 * 13 12 11 16 16 C 1.46504 * 120.00266 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.46758 * 89.99957 * 16 15 13 18 18 H 1.07995 * 120.00423 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99900 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99817 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00166 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47163 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.47032 * 120.00116 * 21 19 17 24 24 H 1.48496 * 109.47058 * 240.00005 * 21 19 17 25 25 C 1.46506 * 119.99900 * 0.02562 * 15 13 12 26 26 C 1.53008 * 109.46903 * 90.00218 * 25 15 13 27 27 C 1.47198 * 109.46876 * 180.02562 * 26 25 15 28 28 N 6.98546 * 107.74195 * 315.25842 * 2 1 3 29 29 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 30 30 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 32 32 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 33 33 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 34 34 H 1.08003 * 125.98997 * 180.02562 * 7 6 5 35 35 H 1.08007 * 126.59296 * 180.02562 * 8 7 6 36 36 H 1.08999 * 109.46765 * 300.00001 * 12 11 2 37 37 H 1.09003 * 109.47264 * 59.99735 * 12 11 2 38 38 H 1.08999 * 109.47267 * 209.99964 * 16 15 13 39 39 H 1.09003 * 109.46761 * 330.00400 * 16 15 13 40 40 H 0.96993 * 119.99880 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.47001 * 209.99708 * 25 15 13 42 42 H 1.08997 * 109.47253 * 330.00294 * 25 15 13 43 43 H 1.09003 * 109.46443 * 299.99876 * 26 25 15 44 44 H 1.08997 * 109.47104 * 59.99984 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 7 4.3705 -0.9785 0.3723 7 6 5.6277 -0.7383 0.7734 8 6 5.5762 -0.2064 2.0095 9 7 4.2530 -0.1225 2.3497 10 1 3.8934 0.2236 3.1814 11 8 2.0063 -0.6737 -1.1668 12 6 2.2000 0.1828 -2.2941 13 6 2.7013 -0.6283 -3.4611 14 8 2.8750 -1.8224 -3.3395 15 7 2.9556 -0.0270 -4.6401 16 6 3.4423 -0.8157 -5.7747 17 6 2.2696 -1.3232 -6.5736 18 1 1.2625 -1.0821 -6.2671 19 6 2.4824 -2.0954 -7.6958 20 7 3.7088 -2.3895 -8.0688 21 14 1.0288 -2.7240 -8.6865 22 1 -0.2350 -2.2566 -8.0622 23 1 1.1153 -2.2060 -10.0754 24 1 1.0505 -4.2086 -8.7097 25 6 2.7452 1.4154 -4.7871 26 6 4.0321 2.1583 -4.4222 27 6 3.8205 3.6075 -4.5694 28 7 3.6587 4.7257 -4.6833 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6054 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2056 34 1 6.5242 -0.9368 0.2047 35 1 6.4170 0.1001 2.6141 36 1 1.2538 0.6546 -2.5588 37 1 2.9320 0.9512 -2.0451 38 1 4.0706 -0.1903 -6.4090 39 1 4.0243 -1.6607 -5.4068 40 1 3.8585 -2.9324 -8.8585 41 1 2.4763 1.6400 -5.8193 42 1 1.9409 1.7347 -4.1243 43 1 4.3010 1.9336 -3.3901 44 1 4.8363 1.8390 -5.0850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344582967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:30 Heat of formation + Delta-G solvation = 7.515150 kcal Electronic energy + Delta-G solvation = -26916.523185 eV Core-core repulsion = 23063.651614 eV Total energy + Delta-G solvation = -3852.871572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.04109 -39.30522 -37.83325 -36.76468 -35.09015 -33.38677 -32.77693 -32.47957 -30.75920 -30.00578 -28.50342 -26.69538 -26.15855 -23.93186 -22.59660 -21.77998 -21.58349 -20.40525 -18.60482 -18.06072 -17.56369 -17.01235 -16.37614 -16.19603 -15.71269 -15.22681 -15.01085 -14.67120 -14.49300 -14.27909 -14.08862 -13.92872 -13.65422 -13.48131 -12.88494 -12.86100 -12.75400 -12.39279 -12.37267 -12.28900 -12.16010 -11.88502 -11.75206 -11.50793 -11.20846 -10.92421 -10.84442 -10.76859 -10.55992 -10.11724 -10.00289 -9.81923 -9.60891 -9.41956 -8.76151 -8.43158 -8.40306 -7.72769 -6.01472 -4.05530 1.96771 2.76200 2.84037 2.98807 3.18074 3.33353 3.36497 3.41605 3.45976 3.49169 3.96545 4.31957 4.40395 4.50522 4.65282 4.88741 4.99652 5.02596 5.07506 5.18492 5.20467 5.27644 5.33782 5.37346 5.38976 5.43725 5.54199 5.59057 5.65096 5.66532 5.85725 5.88622 6.02319 6.09138 6.12831 6.73891 6.98014 7.25747 7.35788 7.47741 7.55831 7.60261 7.95598 8.18626 8.25868 8.37337 8.94824 9.14562 9.59756 11.06706 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010968 B = 0.003595 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.176986 B = 7786.095929 C = 8653.695335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.094 3.906 3 H 0.057 0.943 4 C -0.031 4.031 5 C 0.202 3.798 6 N -0.449 5.449 7 C -0.026 4.026 8 C -0.067 4.067 9 N -0.574 5.574 10 H 0.414 0.586 11 O -0.330 6.330 12 C 0.048 3.952 13 C 0.511 3.489 14 O -0.503 6.503 15 N -0.600 5.600 16 C 0.247 3.753 17 C -0.526 4.526 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.283 1.283 25 C 0.118 3.882 26 C -0.053 4.053 27 C 0.219 3.781 28 N -0.448 5.448 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.168 0.832 35 H 0.173 0.827 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.035 0.965 39 H 0.047 0.953 40 H 0.262 0.738 41 H 0.095 0.905 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.798 8.993 21.699 23.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.034 3.966 3 H 0.075 0.925 4 C -0.070 4.070 5 C -0.061 4.061 6 N -0.167 5.167 7 C -0.175 4.175 8 C -0.200 4.200 9 N -0.178 5.178 10 H 0.251 0.749 11 O -0.247 6.247 12 C -0.032 4.032 13 C 0.296 3.704 14 O -0.376 6.376 15 N -0.334 5.334 16 C 0.128 3.872 17 C -0.565 4.565 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.209 1.209 25 C -0.008 4.008 26 C -0.094 4.094 27 C -0.099 4.099 28 N -0.126 5.126 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.185 0.815 35 H 0.190 0.810 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.113 0.887 42 H 0.090 0.910 43 H 0.124 0.876 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.982 9.310 20.642 22.666 hybrid contribution -0.458 0.137 0.628 0.789 sum -1.439 9.447 21.270 23.318 Atomic orbital electron populations 1.22325 0.95522 1.03413 1.02201 1.21901 0.93184 0.95410 0.86114 0.92453 1.20131 0.85284 1.03986 0.97587 1.23243 0.95948 1.01773 0.85166 1.70544 0.99969 1.19324 1.26901 1.22519 0.96176 1.04380 0.94414 1.22708 0.86048 1.10930 1.00344 1.43375 1.07097 1.49843 1.17462 0.74941 1.88202 1.86073 1.32331 1.18089 1.22341 0.99947 0.93241 0.87690 1.19890 0.79170 0.88294 0.83010 1.90723 1.49784 1.14692 1.82393 1.48153 1.66275 1.06567 1.12430 1.19334 0.95094 0.91241 0.81506 1.21479 0.93221 1.32289 1.09528 0.92322 1.24916 0.95835 0.95859 0.97413 1.69934 1.19451 1.38261 1.25639 0.86471 0.82708 0.78799 0.79607 1.19810 1.21079 1.20903 1.21289 0.93842 0.81767 1.03933 1.19950 1.02713 0.81312 1.05447 1.29128 0.93034 0.95020 0.92747 1.81178 1.08931 1.13039 1.09406 0.91920 0.91193 0.91860 0.89383 0.88095 0.81473 0.80977 0.91570 0.91575 0.94727 0.93457 0.92794 0.88683 0.90992 0.87610 0.86349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 9.53 37.16 0.35 -1.20 16 2 C 0.09 1.00 2.71 -26.73 -0.07 0.93 16 3 H 0.06 0.55 7.79 -51.93 -0.40 0.15 16 4 C -0.03 -0.29 5.55 -27.88 -0.15 -0.44 16 5 C 0.20 2.34 7.41 -155.42 -1.15 1.19 16 6 N -0.45 -6.88 10.44 -10.82 -0.11 -6.99 16 7 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 8 C -0.07 -0.61 12.04 -16.56 -0.20 -0.80 16 9 N -0.57 -4.75 6.15 -10.23 -0.06 -4.81 16 10 H 0.41 1.84 8.96 -40.82 -0.37 1.47 16 11 O -0.33 -5.24 8.63 -55.14 -0.48 -5.72 16 12 C 0.05 0.72 4.78 36.00 0.17 0.89 16 13 C 0.51 10.38 7.75 -10.99 -0.09 10.29 16 14 O -0.50 -12.99 16.08 -14.35 -0.23 -13.22 16 15 N -0.60 -11.60 2.46 -175.05 -0.43 -12.03 16 16 C 0.25 6.06 5.16 -5.19 -0.03 6.03 16 17 C -0.53 -14.42 9.39 -34.44 -0.32 -14.74 16 18 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 21 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.12 1.65 5.17 -4.03 -0.02 1.63 16 26 C -0.05 -0.59 6.03 -29.52 -0.18 -0.77 16 27 C 0.22 2.73 15.43 -20.78 -0.32 2.41 16 28 N -0.45 -6.69 18.53 42.14 0.78 -5.91 16 29 H 0.06 0.57 7.87 -51.93 -0.41 0.16 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.17 1.86 8.06 -52.48 -0.42 1.43 16 35 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.07 0.84 7.13 -51.93 -0.37 0.47 16 37 H 0.07 0.84 7.13 -51.93 -0.37 0.47 16 38 H 0.03 0.83 8.07 -51.93 -0.42 0.42 16 39 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 42 H 0.07 0.83 6.44 -51.93 -0.33 0.50 16 43 H 0.11 1.04 7.22 -51.93 -0.38 0.66 16 44 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 383.75 15.07 5.78 5.78 Total: -1.00 -38.24 383.75 -7.71 -45.95 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.36 Total: -0.90 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -2.32 Total: 6.52 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.91 Total: -55.05 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.71 Total: -18.94 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.24 -7.71 -45.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344582967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.461 kcal (2) G-P(sol) polarization free energy of solvation -38.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds