Wall clock time and date at job start Tue Mar 31 2020 12:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47056 * 2 1 4 4 N 1.46501 * 109.47471 * 119.99708 * 2 1 3 5 5 C 1.34774 * 120.00488 * 275.00480 * 4 2 1 6 6 O 1.21591 * 119.99830 * 359.97438 * 5 4 2 7 7 N 1.34773 * 120.00122 * 179.97438 * 5 4 2 8 8 C 1.46501 * 120.00072 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.47263 * 179.97438 * 8 7 5 10 10 C 1.50707 * 109.47258 * 180.02562 * 9 8 7 11 11 H 1.07994 * 119.99793 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00103 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99932 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99700 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47491 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.46923 * 120.00152 * 14 12 10 17 17 H 1.48504 * 109.46896 * 239.99631 * 14 12 10 18 18 C 1.50699 * 109.47495 * 240.00271 * 2 1 3 19 19 C 1.38278 * 119.92941 * 99.99614 * 18 2 1 20 20 C 1.38116 * 120.06848 * 180.02562 * 19 18 2 21 21 C 1.38873 * 119.92977 * 359.97438 * 20 19 18 22 22 N 1.39940 * 120.06804 * 179.97438 * 21 20 19 23 23 C 1.34782 * 119.99652 * 146.76995 * 22 21 20 24 24 N 1.34770 * 119.99903 * 174.89586 * 23 22 21 25 25 O 1.21590 * 119.99856 * 354.90244 * 23 22 21 26 26 C 1.38866 * 119.85856 * 0.27737 * 21 20 19 27 27 C 1.38114 * 119.92736 * 359.49336 * 26 21 20 28 28 H 1.08996 * 109.47299 * 59.99722 * 1 2 3 29 29 H 1.09005 * 109.47056 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47295 * 299.99629 * 1 2 3 31 31 H 0.97007 * 119.99482 * 94.99764 * 4 2 1 32 32 H 0.96999 * 120.00182 * 359.97438 * 7 5 4 33 33 H 1.09003 * 109.46897 * 299.99858 * 8 7 5 34 34 H 1.09006 * 109.47492 * 59.99282 * 8 7 5 35 35 H 1.08999 * 109.47084 * 299.99268 * 9 8 7 36 36 H 1.09000 * 109.47488 * 59.99716 * 9 8 7 37 37 H 0.96998 * 119.99977 * 179.97438 * 13 12 10 38 38 H 1.07994 * 119.96787 * 0.02562 * 19 18 2 39 39 H 1.08000 * 120.03633 * 179.97438 * 20 19 18 40 40 H 0.96996 * 120.00383 * 327.05061 * 22 21 20 41 41 H 0.96997 * 120.00428 * 0.02562 * 24 23 22 42 42 H 0.97002 * 119.99695 * 180.02562 * 24 23 22 43 43 H 1.07993 * 120.03462 * 179.70350 * 26 21 20 44 44 H 1.08004 * 119.96459 * 180.23195 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0183 2.3572 6 8 1.8582 1.1616 2.4117 7 7 2.5959 -0.6537 3.4577 8 6 2.7353 0.0769 4.7198 9 6 3.2587 -0.8695 5.8019 10 6 3.4014 -0.1181 7.1004 11 1 3.1449 0.9299 7.1488 12 6 3.8595 -0.7684 8.2266 13 7 4.1713 -2.0447 8.1677 14 14 4.0371 0.1633 9.8359 15 1 3.6245 1.5760 9.6381 16 1 3.1750 -0.4647 10.8691 17 1 5.4536 0.1192 10.2796 18 6 2.0324 -0.7103 -1.2305 19 6 2.4585 0.0212 -2.3238 20 6 2.9190 -0.6268 -3.4532 21 6 2.9543 -2.0146 -3.4898 22 7 3.4199 -2.6742 -4.6328 23 6 4.0788 -3.8440 -4.5143 24 7 4.4367 -4.5305 -5.6175 25 8 4.3502 -4.2800 -3.4122 26 6 2.5208 -2.7464 -2.3921 27 6 2.0658 -2.0923 -1.2640 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.2491 -1.6318 1.1526 32 1 2.8260 -1.5950 3.4143 33 1 3.4365 0.9009 4.5871 34 1 1.7645 0.4710 5.0207 35 1 2.5571 -1.6931 5.9346 36 1 4.2293 -1.2639 5.5013 37 1 4.4940 -2.5021 8.9599 38 1 2.4312 1.1004 -2.2945 39 1 3.2513 -0.0549 -4.3069 40 1 3.2720 -2.2876 -5.5100 41 1 4.2205 -4.1826 -6.4967 42 1 4.9106 -5.3726 -5.5322 43 1 2.5425 -3.8258 -2.4193 44 1 1.7320 -2.6608 -0.4085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345841725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:59 Heat of formation + Delta-G solvation = -43.328380 kcal Electronic energy + Delta-G solvation = -25512.220504 eV Core-core repulsion = 21657.144191 eV Total energy + Delta-G solvation = -3855.076313 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.02134 -39.88905 -38.86540 -36.18325 -34.83901 -34.45661 -33.81787 -32.80242 -31.27291 -31.00273 -29.14626 -28.45469 -24.83374 -23.96540 -23.41051 -21.98769 -21.08772 -20.68672 -20.24367 -18.87618 -18.51561 -18.10589 -16.72902 -16.39018 -16.14195 -15.95662 -15.16403 -15.06894 -14.95466 -14.61641 -14.45621 -14.31318 -13.82500 -13.70253 -13.53835 -13.31471 -13.11865 -12.77106 -12.41480 -12.24287 -11.99058 -11.39050 -11.14066 -11.11681 -11.00271 -10.77363 -10.57063 -10.50636 -10.26244 -10.22394 -9.85703 -9.50085 -9.19324 -9.15676 -8.97214 -8.43992 -8.31990 -8.17411 -6.04361 -4.06697 0.98395 1.17976 2.28659 2.64591 3.12516 3.32100 3.39556 3.45221 3.57154 3.69244 3.86640 4.44167 4.49977 4.60520 4.74316 4.77143 5.11669 5.15654 5.20909 5.32718 5.35895 5.37614 5.64115 5.73507 5.83756 5.92940 5.96378 6.18366 6.22460 6.27935 6.33308 6.36335 6.40822 6.46919 6.75101 6.76356 6.84958 7.08632 7.32062 7.32767 7.63643 7.69933 7.95389 8.03879 8.31884 8.51816 8.98796 9.08497 9.57787 11.07391 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018482 B = 0.002059 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.600437 B =13594.752252 C =14748.855175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.204 3.796 3 H 0.095 0.905 4 N -0.748 5.748 5 C 0.700 3.300 6 O -0.599 6.599 7 N -0.739 5.739 8 C 0.141 3.859 9 C 0.012 3.988 10 C -0.519 4.519 11 H 0.060 0.940 12 C 0.057 3.943 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.102 4.102 19 C -0.086 4.086 20 C -0.144 4.144 21 C 0.159 3.841 22 N -0.685 5.685 23 C 0.703 3.297 24 N -0.863 5.863 25 O -0.571 6.571 26 C -0.115 4.115 27 C -0.091 4.091 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.393 0.607 32 H 0.393 0.607 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.261 0.739 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.406 0.594 41 H 0.398 0.602 42 H 0.419 0.581 43 H 0.136 0.864 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.055 -3.436 -33.509 33.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.099 3.901 3 H 0.113 0.887 4 N -0.405 5.405 5 C 0.400 3.600 6 O -0.478 6.478 7 N -0.392 5.392 8 C 0.018 3.982 9 C -0.026 4.026 10 C -0.558 4.558 11 H 0.078 0.922 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.103 4.103 19 C -0.106 4.106 20 C -0.165 4.165 21 C 0.065 3.935 22 N -0.334 5.334 23 C 0.402 3.598 24 N -0.431 5.431 25 O -0.447 6.447 26 C -0.136 4.136 27 C -0.110 4.110 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.228 0.772 32 H 0.226 0.774 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.070 0.930 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.242 0.758 41 H 0.226 0.774 42 H 0.252 0.748 43 H 0.154 0.846 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.076 -2.760 -32.339 32.712 hybrid contribution 0.494 -0.603 -0.081 0.784 sum -3.582 -3.364 -32.420 32.791 Atomic orbital electron populations 1.22190 0.94598 1.02229 1.02614 1.19515 0.93740 0.96413 0.80479 0.88690 1.45311 1.72746 1.13577 1.08898 1.16042 0.78473 0.85159 0.80309 1.90875 1.57708 1.14448 1.84749 1.45538 1.69812 1.13946 1.09939 1.21575 1.00342 0.95569 0.80724 1.19336 0.96619 0.94651 0.91967 1.21100 1.44077 0.96654 0.93924 0.92161 1.25006 0.95284 0.94929 0.99201 1.69969 1.44753 1.09154 1.29467 0.86456 0.77685 0.80125 0.83292 1.19571 1.20981 1.20988 1.19995 1.00645 0.93881 0.95791 1.20776 0.97693 0.99969 0.92113 1.20791 1.04094 0.91986 0.99591 1.17468 0.97594 0.90897 0.87565 1.42548 1.59127 1.22722 1.08966 1.15968 0.78313 0.80534 0.85018 1.42975 1.65191 1.27482 1.07450 1.91042 1.59535 1.69456 1.24644 1.21112 0.98631 1.00888 0.92923 1.20832 0.98795 0.93638 0.97763 0.91803 0.92484 0.91391 0.77223 0.77402 0.92821 0.92810 0.95961 0.95953 0.92952 0.85223 0.85651 0.75842 0.77406 0.74846 0.84633 0.85640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.46 37.15 0.35 -1.37 16 2 C 0.20 2.44 2.77 -69.08 -0.19 2.25 16 3 H 0.10 1.27 7.43 -51.93 -0.39 0.89 16 4 N -0.75 -10.22 5.03 -59.81 -0.30 -10.52 16 5 C 0.70 12.74 8.53 -86.92 -0.74 12.00 16 6 O -0.60 -13.06 16.01 5.29 0.08 -12.98 16 7 N -0.74 -13.72 5.56 -65.23 -0.36 -14.09 16 8 C 0.14 3.13 5.61 -4.04 -0.02 3.11 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 11 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 14 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 C -0.10 -1.04 4.96 -104.59 -0.52 -1.56 16 19 C -0.09 -0.77 9.66 -39.61 -0.38 -1.15 16 20 C -0.14 -1.13 9.96 -39.39 -0.39 -1.52 16 21 C 0.16 1.43 6.28 -83.69 -0.53 0.90 16 22 N -0.69 -4.32 5.35 -14.22 -0.08 -4.40 16 23 C 0.70 5.73 8.58 -86.92 -0.75 4.98 16 24 N -0.86 -2.94 8.88 27.63 0.25 -2.69 16 25 O -0.57 -7.50 14.87 5.29 0.08 -7.42 16 26 C -0.12 -1.21 8.65 -39.39 -0.34 -1.55 16 27 C -0.09 -0.93 9.04 -39.61 -0.36 -1.29 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.39 4.53 6.88 -40.82 -0.28 4.25 16 32 H 0.39 6.38 8.49 -40.82 -0.35 6.03 16 33 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 38 H 0.13 0.95 8.03 -52.49 -0.42 0.53 16 39 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.41 1.01 8.83 -40.82 -0.36 0.65 16 41 H 0.40 -0.02 8.85 -40.82 -0.36 -0.38 16 42 H 0.42 1.19 8.93 -40.82 -0.36 0.82 16 43 H 0.14 1.55 6.42 -52.49 -0.34 1.22 16 44 H 0.13 1.14 6.91 -52.48 -0.36 0.78 16 LS Contribution 374.89 15.07 5.65 5.65 Total: -1.00 -37.47 374.89 -9.53 -47.00 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.14 Total: 7.12 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -4.42 Total: 1.46 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 0.24 Total: -57.59 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.16 Total: -20.40 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.47 -9.53 -47.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345841725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.676 kcal (2) G-P(sol) polarization free energy of solvation -37.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds