Wall clock time and date at job start Tue Mar 31 2020 12:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47222 * 2 1 4 4 C 1.52999 * 109.47111 * 120.00123 * 2 1 3 5 5 C 1.50706 * 109.46993 * 174.99704 * 4 2 1 6 6 N 1.31799 * 119.03007 * 269.72709 * 5 4 2 7 7 C 1.32262 * 120.89343 * 179.76312 * 6 5 4 8 8 C 1.39289 * 119.00998 * 0.50119 * 7 6 5 9 9 N 1.39774 * 120.87876 * 179.77304 * 8 7 6 10 10 C 1.34775 * 120.00038 * 212.44259 * 9 8 7 11 11 O 1.21372 * 120.00109 * 5.26371 * 10 9 8 12 12 C 1.49355 * 119.99741 * 185.26699 * 10 9 8 13 13 O 1.21363 * 120.00385 * 359.97438 * 12 10 9 14 14 N 1.34780 * 120.00109 * 180.02562 * 12 10 9 15 15 C 1.46500 * 120.00080 * 179.97438 * 14 12 10 16 16 H 1.09002 * 109.46951 * 324.99999 * 15 14 12 17 17 C 1.53005 * 109.47231 * 84.99550 * 15 14 12 18 18 C 1.50697 * 109.47093 * 205.00026 * 15 14 12 19 19 H 1.08002 * 120.00029 * 359.97438 * 18 15 14 20 20 C 1.37875 * 120.00127 * 180.02562 * 18 15 14 21 21 N 1.31518 * 120.00034 * 359.97438 * 20 18 15 22 22 Si 1.86795 * 120.00094 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.47597 * 89.99602 * 22 20 18 24 24 H 1.48507 * 109.47212 * 209.99708 * 22 20 18 25 25 H 1.48503 * 109.47197 * 329.99493 * 22 20 18 26 26 C 1.39296 * 118.24783 * 359.75734 * 8 7 6 27 27 N 1.31807 * 119.02609 * 90.00343 * 5 4 2 28 28 H 1.08997 * 109.47029 * 299.99871 * 1 2 3 29 29 H 1.09000 * 109.47213 * 59.99947 * 1 2 3 30 30 H 1.09004 * 109.47372 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46785 * 239.99639 * 2 1 3 32 32 H 1.09004 * 109.46784 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47070 * 300.00141 * 3 2 1 34 34 H 1.08997 * 109.47013 * 60.00119 * 3 2 1 35 35 H 1.09004 * 109.47263 * 55.00088 * 4 2 1 36 36 H 1.08993 * 109.47148 * 295.00054 * 4 2 1 37 37 H 1.08003 * 120.49419 * 180.25819 * 7 6 5 38 38 H 0.96998 * 119.99923 * 32.44428 * 9 8 7 39 39 H 0.96998 * 119.99735 * 359.97438 * 14 12 10 40 40 H 1.08998 * 109.47040 * 179.97438 * 17 15 14 41 41 H 1.08996 * 109.47047 * 300.00547 * 17 15 14 42 42 H 1.09006 * 109.46565 * 59.99886 * 17 15 14 43 43 H 0.96993 * 120.00170 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.49747 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8295 1.1888 6 7 4.0846 -1.8889 0.6230 7 6 5.3985 -2.0194 0.5457 8 6 6.2092 -1.0220 1.0824 9 7 7.6022 -1.1223 1.0265 10 6 8.3554 -0.6037 2.0165 11 8 7.8237 -0.1349 3.0017 12 6 9.8445 -0.6058 1.9012 13 8 10.3763 -1.0749 0.9163 14 7 10.5979 -0.0876 2.8914 15 6 12.0585 -0.0902 2.7785 16 1 12.3813 -0.9933 2.2605 17 6 12.5113 1.1398 1.9892 18 6 12.6688 -0.0559 4.1559 19 1 12.0323 -0.0339 5.0282 20 6 14.0397 -0.0515 4.3026 21 7 14.8148 -0.0778 3.2404 22 14 14.7962 -0.0083 6.0100 23 1 14.9974 -1.3964 6.4977 24 1 16.1051 0.6912 5.9539 25 1 13.8878 0.7149 6.9358 26 6 5.5950 0.0783 1.6761 27 7 4.2741 0.1356 1.7083 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -1.7199 1.2951 36 1 1.7516 -0.1584 2.1369 37 1 5.8363 -2.8884 0.0769 38 1 8.0268 -1.5652 0.2752 39 1 10.1729 0.2870 3.6787 40 1 13.5980 1.1381 1.9056 41 1 12.0698 1.1150 0.9929 42 1 12.1884 2.0430 2.5072 43 1 15.7793 -0.0751 3.3436 44 1 6.1886 0.8726 2.1040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351576661.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:49 Heat of formation + Delta-G solvation = -34.654154 kcal Electronic energy + Delta-G solvation = -25959.515720 eV Core-core repulsion = 22104.815550 eV Total energy + Delta-G solvation = -3854.700170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.68285 -40.31647 -38.35961 -36.82723 -35.64584 -34.87105 -33.94774 -32.51525 -31.24025 -29.28436 -27.73413 -27.41818 -25.41790 -25.08158 -24.76934 -22.82006 -21.11341 -20.44801 -19.90950 -19.07267 -17.73325 -17.46887 -17.07979 -16.39280 -15.78853 -15.62457 -15.30505 -15.20049 -15.12806 -14.36073 -14.13579 -14.03385 -13.85156 -13.48058 -13.35426 -12.79486 -12.56673 -12.53508 -12.21283 -11.92317 -11.89299 -11.60846 -11.49055 -11.21076 -11.12087 -11.07851 -11.04784 -10.97395 -10.91554 -10.88083 -10.41914 -10.33689 -9.54847 -9.25785 -9.19555 -8.70208 -8.67119 -8.24415 -6.23551 -4.33526 0.49425 0.83886 1.65192 2.37036 3.20131 3.27122 3.29674 3.39004 3.56065 3.69518 3.84709 3.93254 4.24211 4.28791 4.58587 4.61680 4.65775 4.69983 4.92335 5.07437 5.09781 5.26494 5.30283 5.39566 5.49369 5.54728 5.61164 5.68150 5.75112 5.86710 6.00535 6.09031 6.24831 6.62797 6.69689 6.75139 6.79997 6.93764 7.09214 7.26652 7.53427 7.61667 7.73866 7.86974 7.97611 8.30721 8.49475 8.75759 9.33822 10.82442 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033356 B = 0.002126 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.238927 B =13170.180365 C =13360.487790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.146 4.146 4 C -0.045 4.045 5 C 0.297 3.703 6 N -0.497 5.497 7 C 0.129 3.871 8 C 0.044 3.956 9 N -0.642 5.642 10 C 0.510 3.490 11 O -0.502 6.502 12 C 0.496 3.504 13 O -0.532 6.532 14 N -0.665 5.665 15 C 0.261 3.739 16 H 0.055 0.945 17 C -0.149 4.149 18 C -0.538 4.538 19 H 0.065 0.935 20 C 0.068 3.932 21 N -0.883 5.883 22 Si 0.905 3.095 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.150 3.850 27 N -0.491 5.491 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.173 0.827 38 H 0.428 0.572 39 H 0.403 0.597 40 H 0.095 0.905 41 H 0.017 0.983 42 H 0.031 0.969 43 H 0.266 0.734 44 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.957 -0.716 -6.819 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 C -0.204 4.204 4 C -0.084 4.084 5 C 0.030 3.970 6 N -0.210 5.210 7 C -0.040 4.040 8 C -0.056 4.056 9 N -0.290 5.290 10 C 0.293 3.707 11 O -0.375 6.375 12 C 0.274 3.726 13 O -0.411 6.411 14 N -0.313 5.313 15 C 0.161 3.839 16 H 0.073 0.927 17 C -0.207 4.207 18 C -0.576 4.576 19 H 0.083 0.917 20 C -0.136 4.136 21 N -0.520 5.520 22 Si 0.733 3.267 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.019 4.019 27 N -0.204 5.204 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.190 0.810 38 H 0.267 0.733 39 H 0.238 0.762 40 H 0.114 0.886 41 H 0.036 0.964 42 H 0.050 0.950 43 H 0.076 0.924 44 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -23.614 -0.608 -6.775 24.574 hybrid contribution 1.607 -0.151 0.850 1.824 sum -22.008 -0.759 -5.926 22.804 Atomic orbital electron populations 1.21816 0.94418 1.01930 1.02065 1.21053 0.95971 0.96586 0.97212 1.21856 1.01479 0.95370 1.01647 1.20486 0.85556 1.02503 0.99870 1.23141 0.97876 0.85729 0.90281 1.68212 1.11815 1.24233 1.16717 1.23131 0.88642 0.96217 0.96035 1.19614 0.84957 0.97377 1.03651 1.43095 1.03080 1.57541 1.25291 1.21156 0.89832 0.77653 0.82082 1.90754 1.74290 1.43055 1.29398 1.19521 0.85870 0.81790 0.85414 1.90749 1.73121 1.46667 1.30558 1.46540 1.10075 1.55588 1.19136 1.19022 0.71369 0.96422 0.97122 0.92690 1.22106 1.04667 0.97709 0.96263 1.21173 0.91940 1.53306 0.91203 0.91707 1.24878 0.96832 0.94357 0.97516 1.69884 1.04702 1.48854 1.28519 0.86380 0.78597 0.78296 0.83471 1.20467 1.20978 1.19707 1.23463 0.90336 0.95099 0.92994 1.68343 1.05956 1.28834 1.17285 0.92390 0.92444 0.92461 0.90980 0.92580 0.92994 0.92195 0.89235 0.89135 0.80980 0.73341 0.76233 0.88630 0.96432 0.95027 0.92382 0.80415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.19 37.16 0.34 -0.50 16 2 C -0.09 -0.68 2.91 -90.62 -0.26 -0.94 16 3 C -0.15 -1.21 8.91 37.16 0.33 -0.88 16 4 C -0.05 -0.39 5.12 -27.88 -0.14 -0.53 16 5 C 0.30 3.39 6.25 -157.18 -0.98 2.41 16 6 N -0.50 -5.67 10.32 -10.56 -0.11 -5.78 16 7 C 0.13 1.34 11.26 -16.98 -0.19 1.15 16 8 C 0.04 0.52 6.33 -83.45 -0.53 -0.01 16 9 N -0.64 -7.78 5.35 -10.11 -0.05 -7.84 16 10 C 0.51 7.83 7.66 -11.63 -0.09 7.74 16 11 O -0.50 -8.36 14.17 5.48 0.08 -8.28 16 12 C 0.50 9.20 7.85 -11.63 -0.09 9.11 16 13 O -0.53 -10.94 16.15 5.49 0.09 -10.85 16 14 N -0.66 -13.45 5.06 -55.39 -0.28 -13.73 16 15 C 0.26 6.31 2.56 -69.08 -0.18 6.14 16 16 H 0.06 1.50 7.58 -51.93 -0.39 1.10 16 17 C -0.15 -3.49 9.26 37.16 0.34 -3.15 16 18 C -0.54 -13.78 8.73 -34.44 -0.30 -14.08 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 20 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 21 N -0.88 -23.86 11.32 55.43 0.63 -23.23 16 22 Si 0.91 20.16 29.54 -169.99 -5.02 15.14 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 C 0.15 1.94 9.94 -16.98 -0.17 1.77 16 27 N -0.49 -6.17 9.25 -10.56 -0.10 -6.27 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.57 6.66 -51.93 -0.35 0.22 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.17 1.24 8.06 -52.48 -0.42 0.82 16 38 H 0.43 4.41 8.30 -40.82 -0.34 4.07 16 39 H 0.40 7.58 8.01 -40.82 -0.33 7.26 16 40 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.27 6.83 8.31 -40.82 -0.34 6.50 16 44 H 0.18 2.36 6.47 -52.49 -0.34 2.02 16 LS Contribution 372.36 15.07 5.61 5.61 Total: -1.00 -29.21 372.36 -7.42 -36.63 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.25 Total: 8.70 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: -2.01 Total: 9.89 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.09 Total: -56.84 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: 0.17 Total: -19.13 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.21 -7.42 -36.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351576661.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.978 kcal (2) G-P(sol) polarization free energy of solvation -29.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds