Wall clock time and date at job start Tue Mar 31 2020 12:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46688 * 2 1 4 4 C 1.50697 * 109.46942 * 240.00579 * 2 1 3 5 5 H 1.08005 * 119.99682 * 245.54029 * 4 2 1 6 6 C 1.37876 * 120.00464 * 65.53242 * 4 2 1 7 7 N 1.31511 * 119.99916 * 355.18271 * 6 4 2 8 8 Si 1.86803 * 120.00076 * 175.17703 * 6 4 2 9 9 H 1.48499 * 109.46714 * 95.00429 * 8 6 4 10 10 H 1.48493 * 109.47357 * 215.00171 * 8 6 4 11 11 H 1.48495 * 109.47202 * 335.00673 * 8 6 4 12 12 N 1.46494 * 109.47660 * 119.99932 * 2 1 3 13 13 C 1.34773 * 120.00452 * 275.00506 * 12 2 1 14 14 O 1.21565 * 119.99694 * 359.97438 * 13 12 2 15 15 C 1.47814 * 120.00525 * 179.97438 * 13 12 2 16 16 N 1.33010 * 120.15104 * 354.61002 * 15 13 12 17 17 C 1.31742 * 120.00216 * 180.02562 * 16 15 13 18 18 C 1.38810 * 120.30685 * 359.97438 * 17 16 15 19 19 N 1.32028 * 120.31256 * 0.02562 * 18 17 16 20 20 C 1.32746 * 119.99204 * 0.02562 * 19 18 17 21 21 N 1.38810 * 120.15202 * 179.97438 * 20 19 18 22 22 C 1.34776 * 119.99892 * 5.34029 * 21 20 19 23 23 O 1.21270 * 120.00356 * 359.97438 * 22 21 20 24 24 C 1.50702 * 119.99929 * 179.97438 * 22 21 20 25 25 C 1.53005 * 109.47319 * 179.97438 * 24 22 21 26 26 C 1.53003 * 109.47429 * 300.00023 * 24 22 21 27 27 C 1.53004 * 109.46879 * 60.00048 * 24 22 21 28 28 H 1.09004 * 109.46713 * 304.95103 * 1 2 3 29 29 H 1.09000 * 109.47493 * 64.95325 * 1 2 3 30 30 H 1.08997 * 109.46665 * 184.95445 * 1 2 3 31 31 H 0.97003 * 119.99933 * 179.97438 * 7 6 4 32 32 H 0.97000 * 120.00043 * 94.99686 * 12 2 1 33 33 H 1.07998 * 119.84883 * 179.97438 * 17 16 15 34 34 H 1.07998 * 119.84138 * 179.74318 * 18 17 16 35 35 H 0.96996 * 119.99797 * 185.33998 * 21 20 19 36 36 H 1.08999 * 109.46551 * 60.00304 * 25 24 22 37 37 H 1.08994 * 109.46917 * 180.02562 * 25 24 22 38 38 H 1.08997 * 109.46814 * 300.00548 * 25 24 22 39 39 H 1.09004 * 109.46350 * 59.99538 * 26 24 22 40 40 H 1.08995 * 109.47131 * 179.97438 * 26 24 22 41 41 H 1.08994 * 109.46710 * 300.00477 * 26 24 22 42 42 H 1.08999 * 109.46934 * 60.00073 * 27 24 22 43 43 H 1.08999 * 109.46946 * 179.97438 * 27 24 22 44 44 H 1.08996 * 109.47027 * 299.99839 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5774 -1.6376 -1.1340 6 6 1.7959 -0.1764 -2.4796 7 7 1.0518 0.9008 -2.6041 8 14 2.5325 -0.9832 -3.9948 9 1 1.5397 -1.9112 -4.5935 10 1 2.8935 0.0620 -4.9860 11 1 3.7496 -1.7416 -3.6096 12 7 2.0185 -0.6905 1.1961 13 6 2.1472 -0.0183 2.3571 14 8 1.8584 1.1613 2.4116 15 6 2.6395 -0.7152 3.5641 16 7 2.8545 -2.0275 3.5369 17 6 3.2928 -2.6457 4.6145 18 6 3.5329 -1.9338 5.7816 19 7 3.3237 -0.6308 5.8224 20 6 2.8812 0.0043 4.7439 21 7 2.6596 1.3740 4.7832 22 6 2.9947 2.0796 5.8815 23 8 3.4894 1.5179 6.8356 24 6 2.7546 3.5668 5.9239 25 6 3.2196 4.1203 7.2724 26 6 3.5388 4.2424 4.7970 27 6 1.2612 3.8476 5.7455 28 1 -0.3633 0.5888 0.8424 29 1 -0.3634 0.4351 -0.9310 30 1 -0.3632 -1.0238 0.0888 31 1 0.8858 1.2766 -3.4828 32 1 2.2492 -1.6317 1.1525 33 1 3.4661 -3.7114 4.5897 34 1 3.8882 -2.4488 6.6619 35 1 2.2636 1.8232 4.0202 36 1 4.2835 3.9202 7.3998 37 1 3.0456 5.1958 7.3032 38 1 2.6607 3.6389 8.0748 39 1 3.2070 3.8479 3.8365 40 1 3.3648 5.3179 4.8275 41 1 4.6026 4.0422 4.9241 42 1 0.7026 3.3663 6.5483 43 1 1.0875 4.9232 5.7766 44 1 0.9296 3.4533 4.7850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361673991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:37 Heat of formation + Delta-G solvation = -21.598831 kcal Electronic energy + Delta-G solvation = -27464.263876 eV Core-core repulsion = 23610.129828 eV Total energy + Delta-G solvation = -3854.134049 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.58421 -39.94371 -38.84092 -35.96449 -35.48344 -34.74008 -33.85645 -32.45158 -30.69415 -28.92860 -27.48610 -27.30594 -25.54952 -25.31860 -24.88904 -22.48105 -21.77167 -19.93744 -19.55050 -18.25027 -18.05657 -17.39207 -16.38041 -16.07145 -15.81292 -15.34642 -15.13922 -14.87310 -14.81937 -14.27348 -14.03920 -13.96455 -13.63840 -13.47748 -13.14201 -12.54359 -12.50874 -12.36024 -12.15285 -11.84190 -11.81867 -11.56227 -11.52442 -11.17816 -11.10961 -11.08034 -11.02043 -10.88848 -10.59099 -10.43809 -10.33011 -10.03233 -9.75638 -9.13183 -8.82606 -8.69495 -8.50162 -8.05008 -6.19805 -4.28456 0.44115 1.06351 2.60989 2.78459 3.09696 3.21561 3.28983 3.31835 3.62889 3.94245 4.04240 4.17458 4.29417 4.42725 4.58432 4.68556 4.71072 5.00067 5.05108 5.13728 5.16445 5.40742 5.44052 5.45178 5.60407 5.66278 5.71111 5.77288 5.93509 6.03480 6.07122 6.13543 6.42719 6.69385 6.83194 6.99256 7.02796 7.16843 7.34081 7.46437 7.60581 7.74733 7.79862 8.01752 8.17442 8.45428 8.64305 8.88376 9.38641 10.86744 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014507 B = 0.003641 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.696683 B = 7688.777210 C = 9042.298808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.260 3.740 3 H 0.056 0.944 4 C -0.536 4.536 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.671 5.671 13 C 0.567 3.433 14 O -0.558 6.558 15 C -0.003 4.003 16 N -0.383 5.383 17 C 0.005 3.995 18 C 0.104 3.896 19 N -0.443 5.443 20 C 0.367 3.633 21 N -0.639 5.639 22 C 0.510 3.490 23 O -0.480 6.480 24 C -0.083 4.083 25 C -0.126 4.126 26 C -0.146 4.146 27 C -0.145 4.145 28 H 0.017 0.983 29 H 0.090 0.910 30 H 0.028 0.972 31 H 0.265 0.735 32 H 0.403 0.597 33 H 0.175 0.825 34 H 0.175 0.825 35 H 0.437 0.563 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.009 0.779 16.212 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.073 0.927 4 C -0.574 4.574 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.315 5.315 13 C 0.350 3.650 14 O -0.439 6.439 15 C -0.150 4.150 16 N -0.100 5.100 17 C -0.159 4.159 18 C -0.060 4.060 19 N -0.163 5.163 20 C 0.131 3.869 21 N -0.300 5.300 22 C 0.296 3.704 23 O -0.350 6.350 24 C -0.086 4.086 25 C -0.184 4.184 26 C -0.204 4.204 27 C -0.203 4.203 28 H 0.036 0.964 29 H 0.108 0.892 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.237 0.763 33 H 0.192 0.808 34 H 0.192 0.808 35 H 0.291 0.709 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.012 1.552 16.642 16.984 hybrid contribution 0.317 -0.903 -1.176 1.516 sum 3.329 0.649 15.467 15.834 Atomic orbital electron populations 1.22085 0.98080 0.98744 1.01547 1.18947 0.91251 0.94253 0.79653 0.92659 1.21185 1.36843 1.09076 0.90297 0.91855 1.24871 0.94696 0.94977 0.99016 1.69912 1.36509 1.21350 1.24163 0.86422 0.79515 0.78999 0.82150 1.20562 1.20980 1.19726 1.46441 1.61277 1.14360 1.09442 1.17524 0.78761 0.85973 0.82742 1.90321 1.54461 1.15617 1.83519 1.21918 1.06729 0.91319 0.94992 1.68293 1.05631 1.07236 1.28805 1.23661 1.00534 1.02047 0.89641 1.24006 0.93236 0.89621 0.99131 1.68647 1.12410 1.09435 1.25847 1.19359 0.91404 0.86556 0.89561 1.44736 1.59744 1.04175 1.21319 1.21083 0.77598 0.89675 0.82015 1.90753 1.38821 1.71202 1.34215 1.20834 0.98343 0.90457 0.98982 1.21670 1.02114 1.00260 0.94324 1.21930 0.99986 1.01202 0.97263 1.21922 0.92553 1.02921 1.02893 0.96386 0.89177 0.95307 0.92494 0.76265 0.80769 0.80793 0.70882 0.91900 0.91754 0.91903 0.91250 0.90935 0.92038 0.92059 0.90931 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.36 37.16 0.35 -3.12 16 2 C 0.26 6.37 2.50 -69.09 -0.17 6.19 16 3 H 0.06 1.52 7.58 -51.93 -0.39 1.13 16 4 C -0.54 -13.86 8.67 -34.44 -0.30 -14.16 16 5 H 0.06 1.59 7.72 -52.48 -0.41 1.18 16 6 C 0.07 1.78 5.35 -17.82 -0.10 1.69 16 7 N -0.88 -24.04 11.53 55.43 0.64 -23.41 16 8 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 N -0.67 -14.01 5.06 -55.89 -0.28 -14.29 16 13 C 0.57 11.27 7.76 -12.35 -0.10 11.17 16 14 O -0.56 -11.72 13.30 5.31 0.07 -11.65 16 15 C 0.00 -0.05 6.77 -82.67 -0.56 -0.61 16 16 N -0.38 -5.84 9.72 -9.50 -0.09 -5.94 16 17 C 0.01 0.06 11.21 -17.38 -0.19 -0.14 16 18 C 0.10 1.22 11.22 -17.26 -0.19 1.03 16 19 N -0.44 -7.02 8.06 -11.91 -0.10 -7.11 16 20 C 0.37 6.22 7.42 -154.48 -1.15 5.07 16 21 N -0.64 -10.31 5.05 -11.18 -0.06 -10.37 16 22 C 0.51 7.73 6.44 -10.98 -0.07 7.66 16 23 O -0.48 -8.40 14.26 5.57 0.08 -8.32 16 24 C -0.08 -0.95 0.87 -155.65 -0.14 -1.09 16 25 C -0.13 -1.27 7.76 37.16 0.29 -0.98 16 26 C -0.15 -1.55 8.37 37.16 0.31 -1.24 16 27 C -0.15 -1.49 8.37 37.16 0.31 -1.18 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 2.32 6.24 -51.93 -0.32 2.00 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.40 7.82 7.89 -40.82 -0.32 7.50 16 33 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.44 7.16 4.03 -40.96 -0.17 6.99 16 36 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 39 H 0.07 0.82 7.56 -51.93 -0.39 0.42 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.76 7.56 -51.93 -0.39 0.37 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -30.97 366.10 -7.12 -38.09 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -6.18 Total: 11.97 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: -1.70 Total: 10.29 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: 0.11 Total: -61.12 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: 0.15 Total: -19.97 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.97 -7.12 -38.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361673991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.492 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds