Wall clock time and date at job start Tue Mar 31 2020 12:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47163 * 2 1 4 4 C 1.50702 * 109.46794 * 119.99655 * 2 1 3 5 5 H 1.07995 * 119.99745 * 120.00571 * 4 2 1 6 6 C 1.37881 * 120.00194 * 299.99870 * 4 2 1 7 7 N 1.31515 * 119.99968 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00114 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46660 * 60.00230 * 8 6 4 10 10 H 1.48491 * 109.47264 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47284 * 300.00817 * 8 6 4 12 12 N 1.46499 * 109.47521 * 239.99569 * 2 1 3 13 13 C 1.34780 * 119.99758 * 85.00081 * 12 2 1 14 14 O 1.21559 * 120.00101 * 0.02562 * 13 12 2 15 15 C 1.47815 * 119.99975 * 180.02562 * 13 12 2 16 16 N 1.33012 * 120.15514 * 354.50502 * 15 13 12 17 17 C 1.31733 * 120.00380 * 179.97438 * 16 15 13 18 18 C 1.38814 * 120.30660 * 359.97438 * 17 16 15 19 19 N 1.32028 * 120.31240 * 0.02562 * 18 17 16 20 20 C 1.32744 * 119.99472 * 359.97438 * 19 18 17 21 21 N 1.38804 * 120.15454 * 179.97438 * 20 19 18 22 22 C 1.34777 * 120.00007 * 5.47006 * 21 20 19 23 23 O 1.21265 * 119.99962 * 0.02562 * 22 21 20 24 24 C 1.50701 * 119.99898 * 180.02562 * 22 21 20 25 25 C 1.53003 * 109.47192 * 180.02562 * 24 22 21 26 26 C 1.53007 * 109.47164 * 299.99867 * 24 22 21 27 27 C 1.53002 * 109.47319 * 60.00141 * 24 22 21 28 28 H 1.08996 * 109.46905 * 60.00602 * 1 2 3 29 29 H 1.09007 * 109.46829 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47733 * 300.00300 * 1 2 3 31 31 H 0.96994 * 119.99908 * 179.97438 * 7 6 4 32 32 H 0.96994 * 120.00491 * 265.00036 * 12 2 1 33 33 H 1.08000 * 119.84764 * 179.97438 * 17 16 15 34 34 H 1.08003 * 119.84177 * 179.74450 * 18 17 16 35 35 H 0.97002 * 120.00190 * 185.47111 * 21 20 19 36 36 H 1.09000 * 109.47025 * 59.99625 * 25 24 22 37 37 H 1.08997 * 109.47256 * 179.97438 * 25 24 22 38 38 H 1.09003 * 109.46544 * 299.99982 * 25 24 22 39 39 H 1.09001 * 109.46697 * 60.00314 * 26 24 22 40 40 H 1.08997 * 109.47228 * 180.02562 * 26 24 22 41 41 H 1.09000 * 109.47144 * 300.00431 * 26 24 22 42 42 H 1.08996 * 109.46916 * 59.99538 * 27 24 22 43 43 H 1.08997 * 109.46715 * 180.02562 * 27 24 22 44 44 H 1.09000 * 109.46808 * 299.99867 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3211 -1.1202 4.0081 9 1 3.8061 -1.1207 4.0083 10 1 1.8257 -0.4204 5.2205 11 1 1.8256 -2.5201 4.0079 12 7 2.0184 -0.6907 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8585 1.1612 -2.4116 15 6 2.6394 -0.7153 -3.5641 16 7 3.0592 -1.9749 -3.4838 17 6 3.4969 -2.5933 -4.5615 18 6 3.5222 -1.9368 -5.7843 19 7 3.1084 -0.6865 -5.8780 20 6 2.6650 -0.0517 -4.7998 21 7 2.2297 1.2629 -4.8945 22 6 2.1523 1.8621 -6.0993 23 8 2.4626 1.2526 -7.1006 24 6 1.6802 3.2896 -6.2019 25 6 1.6852 3.7242 -7.6689 26 6 0.2601 3.3986 -5.6431 27 6 2.6155 4.1952 -5.3981 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.7080 1.1610 3.4844 32 1 2.2491 -1.6318 -1.1525 33 1 3.8375 -3.6159 -4.4933 34 1 3.8864 -2.4496 -6.6622 35 1 1.9811 1.7504 -4.0935 36 1 1.0186 3.0789 -8.2412 37 1 1.3433 4.7565 -7.7433 38 1 2.6968 3.6464 -8.0674 39 1 0.2562 3.0889 -4.5980 40 1 -0.0816 4.4309 -5.7177 41 1 -0.4062 2.7534 -6.2157 42 1 3.6272 4.1175 -5.7963 43 1 2.2737 5.2276 -5.4721 44 1 2.6116 3.8855 -4.3531 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361673992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:40 Heat of formation + Delta-G solvation = -20.991403 kcal Electronic energy + Delta-G solvation = -27467.028482 eV Core-core repulsion = 23612.920773 eV Total energy + Delta-G solvation = -3854.107709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.58591 -39.94700 -38.84298 -35.96756 -35.48766 -34.74938 -33.85762 -32.45750 -30.69010 -28.89680 -27.49022 -27.30908 -25.55258 -25.32073 -24.89024 -22.48293 -21.77082 -19.94356 -19.54972 -18.24808 -18.05351 -17.39799 -16.38297 -16.07107 -15.78100 -15.34511 -15.13692 -14.89773 -14.82323 -14.29593 -14.02626 -13.94462 -13.67395 -13.47841 -13.13913 -12.54099 -12.49649 -12.36464 -12.15673 -11.84746 -11.82827 -11.56615 -11.52593 -11.18394 -11.11359 -11.08267 -11.02895 -10.86864 -10.59651 -10.42240 -10.29758 -10.03328 -9.76354 -9.16014 -8.82724 -8.65601 -8.50027 -8.06484 -6.18681 -4.28009 0.43979 1.06336 2.60721 2.78165 3.09626 3.23552 3.28571 3.30057 3.62789 3.94208 4.04090 4.17181 4.29588 4.42616 4.58157 4.68330 4.70679 4.99873 5.05012 5.14254 5.16232 5.40718 5.44002 5.44485 5.60041 5.65787 5.70734 5.76875 5.93251 6.03330 6.06622 6.13060 6.42552 6.71049 6.83807 6.98856 7.02287 7.16811 7.35735 7.47203 7.60803 7.75008 7.81359 8.03841 8.17223 8.45599 8.63776 8.88425 9.39081 10.87316 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015243 B = 0.003595 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.438264 B = 7786.596489 C = 9217.608523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.261 3.739 3 H 0.054 0.946 4 C -0.536 4.536 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.671 5.671 13 C 0.567 3.433 14 O -0.558 6.558 15 C -0.003 4.003 16 N -0.383 5.383 17 C 0.005 3.995 18 C 0.104 3.896 19 N -0.443 5.443 20 C 0.367 3.633 21 N -0.639 5.639 22 C 0.510 3.490 23 O -0.480 6.480 24 C -0.083 4.083 25 C -0.126 4.126 26 C -0.146 4.146 27 C -0.146 4.146 28 H 0.015 0.985 29 H 0.028 0.972 30 H 0.093 0.907 31 H 0.266 0.734 32 H 0.403 0.597 33 H 0.175 0.825 34 H 0.175 0.825 35 H 0.437 0.563 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.139 0.626 -16.438 16.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.160 3.840 3 H 0.071 0.929 4 C -0.575 4.575 5 H 0.081 0.919 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.315 5.315 13 C 0.350 3.650 14 O -0.439 6.439 15 C -0.150 4.150 16 N -0.099 5.099 17 C -0.159 4.159 18 C -0.060 4.060 19 N -0.163 5.163 20 C 0.131 3.869 21 N -0.300 5.300 22 C 0.296 3.704 23 O -0.350 6.350 24 C -0.086 4.086 25 C -0.184 4.184 26 C -0.204 4.204 27 C -0.203 4.203 28 H 0.035 0.965 29 H 0.048 0.952 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.237 0.763 33 H 0.192 0.808 34 H 0.192 0.808 35 H 0.291 0.709 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.965 1.350 -16.905 17.072 hybrid contribution 0.387 -0.929 1.198 1.565 sum 2.352 0.421 -15.707 15.887 Atomic orbital electron populations 1.22091 0.97970 0.99445 1.01103 1.18934 0.91338 0.94132 0.79638 0.92857 1.21161 1.32757 1.13447 0.90111 0.91874 1.24867 0.94696 0.94923 0.99049 1.69877 1.35666 1.22390 1.24133 0.86473 0.79221 0.79633 0.81602 1.20109 1.21103 1.20076 1.46434 1.61243 1.14392 1.09453 1.17524 0.78812 0.85943 0.82721 1.90320 1.54616 1.15569 1.83412 1.21923 1.06169 0.92583 0.94294 1.68293 1.04089 1.06286 1.31276 1.23663 1.01174 1.01980 0.89057 1.24008 0.92882 0.90118 0.98983 1.68644 1.10641 1.09111 1.27949 1.19358 0.90945 0.87027 0.89556 1.44735 1.61988 1.09824 1.13433 1.21082 0.77432 0.89065 0.82790 1.90752 1.43895 1.65036 1.35311 1.20834 0.97693 0.91088 0.99005 1.21672 1.03052 1.00942 0.92706 1.21931 0.93502 1.03134 1.01796 1.21922 0.98755 0.99465 1.00164 0.96546 0.95247 0.88809 0.92433 0.76254 0.80765 0.80789 0.70882 0.91913 0.91751 0.91889 0.91269 0.90934 0.92063 0.92036 0.90927 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.26 37.16 0.34 -3.17 16 2 C 0.26 6.39 2.56 -69.08 -0.18 6.22 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 4 C -0.54 -13.90 8.73 -34.44 -0.30 -14.20 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.04 11.32 55.43 0.63 -23.41 16 8 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 N -0.67 -14.03 5.06 -55.89 -0.28 -14.31 16 13 C 0.57 11.27 7.76 -12.34 -0.10 11.18 16 14 O -0.56 -11.72 13.30 5.31 0.07 -11.65 16 15 C 0.00 -0.06 6.77 -82.67 -0.56 -0.62 16 16 N -0.38 -5.85 9.72 -9.50 -0.09 -5.95 16 17 C 0.01 0.06 11.21 -17.38 -0.19 -0.13 16 18 C 0.10 1.22 11.22 -17.25 -0.19 1.03 16 19 N -0.44 -7.02 8.06 -11.91 -0.10 -7.11 16 20 C 0.37 6.21 7.42 -154.48 -1.15 5.07 16 21 N -0.64 -10.29 5.05 -11.18 -0.06 -10.35 16 22 C 0.51 7.71 6.44 -10.98 -0.07 7.64 16 23 O -0.48 -8.39 14.26 5.57 0.08 -8.31 16 24 C -0.08 -0.95 0.87 -155.65 -0.14 -1.08 16 25 C -0.13 -1.27 7.76 37.16 0.29 -0.98 16 26 C -0.15 -1.53 8.37 37.16 0.31 -1.22 16 27 C -0.15 -1.50 8.37 37.16 0.31 -1.19 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 31 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.40 7.83 7.90 -40.82 -0.32 7.51 16 33 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.18 1.31 8.06 -52.48 -0.42 0.89 16 35 H 0.44 7.15 4.03 -40.96 -0.17 6.98 16 36 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.07 0.80 7.56 -51.93 -0.39 0.41 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.77 7.56 -51.93 -0.39 0.38 16 LS Contribution 365.73 15.07 5.51 5.51 Total: -1.00 -30.93 365.73 -7.14 -38.07 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -6.17 Total: 12.05 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: -1.71 Total: 10.22 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: 0.10 Total: -61.13 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: 0.15 Total: -19.96 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.93 -7.14 -38.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361673992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.082 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds