Wall clock time and date at job start Tue Mar 31 2020 12:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 C 1.50704 * 109.47099 * 240.00075 * 2 1 3 5 5 N 1.31807 * 119.02720 * 59.72591 * 4 2 1 6 6 C 1.32259 * 120.89093 * 179.75781 * 5 4 2 7 7 C 1.39290 * 119.01189 * 0.51031 * 6 5 4 8 8 N 1.39773 * 120.87404 * 179.76665 * 7 6 5 9 9 C 1.34775 * 120.00466 * 325.42678 * 8 7 6 10 10 O 1.21375 * 119.99813 * 5.26200 * 9 8 7 11 11 C 1.49351 * 120.00065 * 185.25802 * 9 8 7 12 12 O 1.21365 * 120.00287 * 359.64786 * 11 9 8 13 13 N 1.34775 * 120.00242 * 179.64377 * 11 9 8 14 14 C 1.46501 * 119.99620 * 354.34004 * 13 11 9 15 15 C 1.46500 * 120.00279 * 174.33248 * 13 11 9 16 16 H 1.08995 * 109.47047 * 0.02562 * 15 13 11 17 17 C 1.53004 * 109.47024 * 120.00469 * 15 13 11 18 18 C 1.50700 * 109.47259 * 239.99843 * 15 13 11 19 19 H 1.08003 * 120.00024 * 0.02562 * 18 15 13 20 20 C 1.37876 * 119.99994 * 179.97438 * 18 15 13 21 21 N 1.31514 * 119.99934 * 0.02562 * 20 18 15 22 22 Si 1.86796 * 120.00006 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47034 * 90.00538 * 22 20 18 24 24 H 1.48500 * 109.47199 * 210.00059 * 22 20 18 25 25 H 1.48493 * 109.47534 * 330.00299 * 22 20 18 26 26 C 1.39288 * 118.24854 * 359.75240 * 7 6 5 27 27 N 1.31803 * 119.02962 * 240.00373 * 4 2 1 28 28 H 1.08999 * 109.47216 * 59.99421 * 1 2 3 29 29 H 1.08999 * 109.47703 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47268 * 299.99714 * 1 2 3 31 31 H 1.08999 * 109.47216 * 120.00579 * 2 1 3 32 32 H 1.09003 * 109.46642 * 59.99903 * 3 2 1 33 33 H 1.08994 * 109.47587 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.46842 * 300.00173 * 3 2 1 35 35 H 1.08005 * 120.49065 * 180.25673 * 6 5 4 36 36 H 0.97008 * 119.99438 * 145.42957 * 8 7 6 37 37 H 1.08991 * 109.47400 * 84.15061 * 14 13 11 38 38 H 1.09006 * 109.47116 * 204.14790 * 14 13 11 39 39 H 1.09001 * 109.47146 * 324.14878 * 14 13 11 40 40 H 1.09000 * 109.46627 * 300.00264 * 17 15 13 41 41 H 1.09003 * 109.47093 * 59.99531 * 17 15 13 42 42 H 1.08992 * 109.47304 * 180.02562 * 17 15 13 43 43 H 0.97003 * 120.00282 * 179.97438 * 21 20 18 44 44 H 1.07999 * 120.49528 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.6977 -0.2467 -2.4181 6 6 2.1218 -0.8385 -3.5223 7 6 2.9236 -1.9725 -3.4157 8 7 3.3893 -2.6314 -4.5570 9 6 2.6201 -2.6908 -5.6621 10 8 1.5650 -2.0921 -5.6999 11 6 3.0660 -3.4932 -6.8401 12 8 4.1241 -4.0867 -6.8048 13 7 2.2934 -3.5585 -7.9425 14 6 0.9623 -2.9465 -7.9413 15 6 2.7846 -4.2412 -9.1420 16 1 3.7855 -4.6299 -8.9546 17 6 1.8458 -5.3978 -9.4911 18 6 2.8305 -3.2672 -10.2911 19 1 2.5248 -2.2421 -10.1426 20 6 3.2638 -3.6846 -11.5317 21 7 3.6366 -4.9328 -11.7123 22 14 3.3214 -2.4772 -12.9558 23 1 4.6501 -1.8148 -12.9898 24 1 3.0984 -3.2048 -14.2310 25 1 2.2616 -1.4522 -12.7790 26 6 3.2492 -2.4324 -2.1419 27 7 2.7887 -1.7803 -1.0874 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.8470 -0.4506 -4.4921 36 1 4.2663 -3.0460 -4.5537 37 1 1.0498 -1.8859 -8.1766 38 1 0.3375 -3.4343 -8.6895 39 1 0.5092 -3.0641 -6.9569 40 1 1.8125 -6.1022 -8.6600 41 1 0.8447 -5.0093 -9.6784 42 1 2.2115 -5.9060 -10.3833 43 1 3.9412 -5.2266 -12.5852 44 1 3.8682 -3.3085 -2.0171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361911352.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:07 Heat of formation + Delta-G solvation = -12.077652 kcal Electronic energy + Delta-G solvation = -26656.916479 eV Core-core repulsion = 22803.195299 eV Total energy + Delta-G solvation = -3853.721179 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.67635 -40.40764 -38.36359 -36.46569 -35.71052 -34.63664 -33.90836 -32.85988 -30.18175 -29.57207 -27.41264 -26.46481 -25.54277 -25.26531 -25.02971 -23.58222 -21.23961 -20.94965 -19.63956 -18.07554 -17.71478 -17.09551 -16.87199 -16.35054 -16.01091 -15.80448 -15.16438 -15.06436 -14.65719 -14.49055 -14.29584 -13.79120 -13.76653 -13.33827 -13.15923 -12.70289 -12.48045 -12.40659 -12.30293 -11.99974 -11.67776 -11.58103 -11.29445 -11.20485 -11.15745 -11.12589 -11.02221 -10.91569 -10.85631 -10.80893 -10.32028 -10.27426 -9.50038 -9.32592 -8.98773 -8.68180 -8.54076 -7.86168 -6.18545 -4.27467 0.52763 0.86636 1.67121 2.41003 3.21887 3.28734 3.31028 3.42062 3.58171 3.64703 3.82199 3.95812 4.27150 4.31687 4.57694 4.67349 4.78137 4.79260 4.87234 5.13384 5.22698 5.39549 5.49609 5.57777 5.60133 5.66340 5.78597 5.90690 5.96983 6.05746 6.15340 6.28262 6.43152 6.58712 6.66422 6.75117 6.82616 6.90319 7.13863 7.26078 7.58098 7.64311 7.86676 7.89310 7.99369 8.23767 8.44984 8.77397 9.39308 10.86833 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027024 B = 0.002534 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.859271 B =11049.218142 C =11361.554407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.023 4.023 3 C -0.141 4.141 4 C 0.299 3.701 5 N -0.492 5.492 6 C 0.151 3.849 7 C 0.042 3.958 8 N -0.642 5.642 9 C 0.511 3.489 10 O -0.498 6.498 11 C 0.495 3.505 12 O -0.534 6.534 13 N -0.549 5.549 14 C 0.080 3.920 15 C 0.255 3.745 16 H 0.067 0.933 17 C -0.148 4.148 18 C -0.530 4.530 19 H 0.062 0.938 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.902 3.098 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.129 3.871 27 N -0.499 5.499 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.184 0.816 36 H 0.427 0.573 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.014 0.986 41 H 0.034 0.966 42 H 0.098 0.902 43 H 0.265 0.735 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.710 7.044 19.863 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.044 4.044 3 C -0.199 4.199 4 C 0.031 3.969 5 N -0.205 5.205 6 C -0.018 4.018 7 C -0.058 4.058 8 N -0.291 5.291 9 C 0.295 3.705 10 O -0.372 6.372 11 C 0.276 3.724 12 O -0.413 6.413 13 N -0.279 5.279 14 C -0.063 4.063 15 C 0.156 3.844 16 H 0.085 0.915 17 C -0.206 4.206 18 C -0.569 4.569 19 H 0.080 0.920 20 C -0.136 4.136 21 N -0.524 5.524 22 Si 0.729 3.271 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.040 4.040 27 N -0.212 5.212 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.201 0.799 36 H 0.266 0.734 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.033 0.967 41 H 0.053 0.947 42 H 0.116 0.884 43 H 0.075 0.925 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.208 7.434 20.384 22.101 hybrid contribution 0.823 -0.139 -1.740 1.930 sum -3.385 7.295 18.644 20.305 Atomic orbital electron populations 1.21801 0.93113 1.02180 1.02864 1.19918 0.96531 0.95732 0.92195 1.21799 1.00947 0.94304 1.02860 1.23158 0.90671 0.89735 0.93300 1.68247 1.22056 1.31892 0.98316 1.23656 0.91113 0.88497 0.98497 1.19632 1.02143 0.95465 0.88578 1.43106 1.21243 1.54437 1.10299 1.21123 0.83757 0.81627 0.84038 1.90693 1.22408 1.42929 1.81130 1.19446 0.85773 0.83436 0.83780 1.90736 1.23148 1.45925 1.81498 1.48303 1.15886 1.51285 1.12451 1.21989 0.83538 0.98142 1.02590 1.19212 0.95439 0.90530 0.79250 0.91505 1.22113 0.98858 0.98050 1.01628 1.21269 1.45382 0.96371 0.93839 0.91976 1.24886 0.94656 0.95451 0.98654 1.69869 1.43238 1.15332 1.23956 0.86434 0.78566 0.80824 0.81251 1.20527 1.21014 1.19784 1.23156 0.96847 0.97954 0.86008 1.68236 1.11136 1.08431 1.33409 0.91330 0.92796 0.91678 0.88751 0.91672 0.92814 0.91370 0.79903 0.73405 0.92611 0.90889 0.90534 0.96695 0.94705 0.88398 0.92490 0.81000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.08 37.15 0.34 -0.81 16 2 C -0.02 -0.21 3.25 -91.77 -0.30 -0.51 16 3 C -0.14 -1.10 9.09 37.16 0.34 -0.76 16 4 C 0.30 3.52 6.34 -157.17 -1.00 2.52 16 5 N -0.49 -6.30 9.79 -10.56 -0.10 -6.40 16 6 C 0.15 1.98 9.99 -16.98 -0.17 1.81 16 7 C 0.04 0.50 6.35 -83.46 -0.53 -0.03 16 8 N -0.64 -8.06 5.34 -10.11 -0.05 -8.11 16 9 C 0.51 8.05 7.63 -11.63 -0.09 7.96 16 10 O -0.50 -8.12 10.74 5.48 0.06 -8.06 16 11 C 0.50 9.63 7.72 -11.63 -0.09 9.54 16 12 O -0.53 -11.47 15.83 5.48 0.09 -11.39 16 13 N -0.55 -11.45 2.75 -175.81 -0.48 -11.93 16 14 C 0.08 1.44 8.47 59.85 0.51 1.94 16 15 C 0.25 6.23 2.62 -69.08 -0.18 6.04 16 16 H 0.07 1.85 6.91 -51.93 -0.36 1.49 16 17 C -0.15 -3.40 8.96 37.16 0.33 -3.06 16 18 C -0.53 -13.83 8.37 -34.44 -0.29 -14.12 16 19 H 0.06 1.61 7.65 -52.48 -0.40 1.21 16 20 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 21 N -0.89 -24.13 11.32 55.43 0.63 -23.50 16 22 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 C 0.13 1.38 11.26 -16.98 -0.19 1.19 16 27 N -0.50 -5.90 10.29 -10.56 -0.11 -6.01 16 28 H 0.07 0.62 8.00 -51.93 -0.42 0.21 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.59 8.01 -51.92 -0.42 0.18 16 35 H 0.18 2.48 6.28 -52.48 -0.33 2.15 16 36 H 0.43 4.66 8.31 -40.82 -0.34 4.32 16 37 H 0.06 0.99 8.13 -51.93 -0.42 0.56 16 38 H 0.07 1.29 6.44 -51.93 -0.33 0.95 16 39 H 0.08 1.26 5.84 -51.93 -0.30 0.96 16 40 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.03 0.74 6.67 -51.93 -0.35 0.39 16 42 H 0.10 2.46 6.07 -51.93 -0.32 2.14 16 43 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 364.85 15.07 5.50 5.50 Total: -1.00 -29.55 364.85 -6.99 -36.54 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.07 Total: 4.52 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: -1.41 Total: 13.38 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.12 Total: -55.95 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: 0.15 Total: -19.45 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.55 -6.99 -36.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361911352.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.459 kcal (2) G-P(sol) polarization free energy of solvation -29.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds