Wall clock time and date at job start Tue Mar 31 2020 12:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47523 * 2 1 4 4 C 1.50696 * 109.46978 * 239.99676 * 2 1 3 5 5 H 1.07997 * 120.00209 * 274.99729 * 4 2 1 6 6 C 1.37880 * 120.00062 * 95.00706 * 4 2 1 7 7 N 1.31512 * 120.00221 * 184.90765 * 6 4 2 8 8 Si 1.86798 * 119.99773 * 4.90968 * 6 4 2 9 9 H 1.48501 * 109.47500 * 84.82830 * 8 6 4 10 10 H 1.48506 * 109.47274 * 204.82789 * 8 6 4 11 11 H 1.48504 * 109.47171 * 324.82332 * 8 6 4 12 12 N 1.46502 * 109.46783 * 119.99848 * 2 1 3 13 13 C 1.46501 * 119.99983 * 60.00119 * 12 2 1 14 14 S 1.65599 * 119.99895 * 239.99606 * 12 2 1 15 15 O 1.42094 * 106.40758 * 336.46745 * 14 12 2 16 16 O 1.42105 * 106.40445 * 203.53749 * 14 12 2 17 17 N 1.65612 * 107.21733 * 90.00287 * 14 12 2 18 18 C 1.46503 * 119.99823 * 64.99834 * 17 14 12 19 19 H 1.09001 * 109.54100 * 25.00150 * 18 17 14 20 20 C 1.53180 * 109.54156 * 264.82248 * 18 17 14 21 21 C 1.53096 * 109.16372 * 183.15329 * 20 18 17 22 22 O 1.42904 * 109.41216 * 57.60508 * 21 20 18 23 23 C 1.42905 * 114.10185 * 298.84671 * 22 21 20 24 24 C 1.52995 * 109.47760 * 181.14075 * 23 22 21 25 25 C 1.52997 * 109.48004 * 301.17381 * 23 22 21 26 26 C 1.53103 * 109.48500 * 61.11163 * 23 22 21 27 27 H 1.09001 * 109.46951 * 55.06988 * 1 2 3 28 28 H 1.08996 * 109.47596 * 175.06934 * 1 2 3 29 29 H 1.09005 * 109.47125 * 295.07564 * 1 2 3 30 30 H 0.96994 * 120.00344 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.46667 * 269.99808 * 13 12 2 32 32 H 1.08991 * 109.47014 * 29.99604 * 13 12 2 33 33 H 1.09004 * 109.46977 * 150.00093 * 13 12 2 34 34 H 0.96996 * 119.99608 * 244.99783 * 17 14 12 35 35 H 1.08996 * 109.52355 * 303.06055 * 20 18 17 36 36 H 1.09001 * 109.51959 * 63.18970 * 20 18 17 37 37 H 1.08996 * 109.48068 * 177.59600 * 21 20 18 38 38 H 1.09004 * 109.47492 * 297.62123 * 21 20 18 39 39 H 1.09001 * 109.47438 * 59.99833 * 24 23 22 40 40 H 1.09004 * 109.47042 * 180.02562 * 24 23 22 41 41 H 1.09008 * 109.47224 * 299.99539 * 24 23 22 42 42 H 1.09003 * 109.47084 * 59.99770 * 25 23 22 43 43 H 1.08992 * 109.47352 * 179.97438 * 25 23 22 44 44 H 1.09000 * 109.46748 * 300.00390 * 25 23 22 45 45 H 1.09006 * 109.59452 * 182.58040 * 26 23 22 46 46 H 1.08994 * 109.45869 * 62.38777 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1355 -1.7855 -1.2289 6 6 2.3603 0.0120 -2.3580 7 7 2.7061 -0.6133 -3.4621 8 14 2.3136 1.8790 -2.3174 9 1 3.5991 2.3948 -1.7820 10 1 2.1061 2.3990 -3.6929 11 1 1.1985 2.3274 -1.4453 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4281 14 16 2.9704 0.1142 2.2862 15 8 3.5794 1.1830 1.5750 16 8 3.7117 -0.8789 2.9816 17 7 1.9606 0.8092 3.3999 18 6 1.1508 -0.0351 4.2818 19 1 1.6285 -1.0084 4.3943 20 6 -0.2452 -0.2162 3.6777 21 6 -1.1082 -1.0332 4.6428 22 8 -1.1641 -0.3703 5.9075 23 6 0.1070 -0.2152 6.5417 24 6 -0.0783 0.4777 7.8932 25 6 0.7416 -1.5908 6.7561 26 6 1.0206 0.6337 5.6536 27 1 -0.3633 0.5884 -0.8426 28 1 -0.3634 -1.0238 -0.0883 29 1 -0.3634 0.4356 0.9309 30 1 2.9365 -0.1051 -4.2555 31 1 0.7374 -2.1443 1.9994 32 1 1.5294 -2.5968 0.4709 33 1 2.4628 -2.5819 1.9865 34 1 1.9054 1.7751 3.4681 35 1 -0.7023 0.7603 3.5178 36 1 -0.1649 -0.7411 2.7258 37 1 -2.1155 -1.1289 4.2376 38 1 -0.6721 -2.0240 4.7705 39 1 -0.7283 -0.1270 8.5255 40 1 0.8915 0.5964 8.3766 41 1 -0.5299 1.4580 7.7400 42 1 0.8738 -2.0840 5.7931 43 1 1.7113 -1.4723 7.2394 44 1 0.0917 -2.1961 7.3881 45 1 2.0053 0.7150 6.1141 46 1 0.5899 1.6279 5.5349 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407971752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:59 Heat of formation + Delta-G solvation = -128.485842 kcal Electronic energy + Delta-G solvation = -27808.802964 eV Core-core repulsion = 24053.185147 eV Total energy + Delta-G solvation = -3755.617817 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.26630 -36.78431 -36.43519 -35.65466 -35.30845 -33.79766 -32.48265 -30.93536 -29.97335 -28.01527 -27.55950 -25.74110 -25.19662 -23.97079 -21.96233 -20.73640 -19.64691 -18.75673 -17.52028 -17.36647 -16.76937 -16.40614 -16.17930 -15.55758 -15.03105 -14.90622 -14.51975 -14.32767 -13.96129 -13.56421 -13.29976 -13.23572 -12.74596 -12.67596 -12.50832 -12.39000 -12.21755 -12.02858 -11.91075 -11.79438 -11.70831 -11.61261 -11.47934 -11.38782 -11.33906 -11.23771 -11.11173 -10.81607 -10.69510 -10.39525 -10.19491 -9.82303 -9.66104 -9.45799 -9.32587 -8.62008 -8.10699 -6.18945 -4.19623 1.09974 3.25986 3.33479 3.38184 3.44604 3.57348 4.01647 4.36071 4.39796 4.55547 4.62817 4.76066 4.85477 4.92410 4.99217 5.14746 5.15624 5.20961 5.33690 5.41370 5.49901 5.50969 5.57352 5.61121 5.70305 5.73321 5.80505 5.86710 5.95482 6.02521 6.09175 6.12649 6.21120 6.32993 6.42227 6.54021 6.60326 6.88417 7.07406 7.10327 7.16191 7.48592 7.63693 8.40890 8.85217 9.42609 10.92876 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022652 B = 0.004350 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.780015 B = 6435.038215 C = 6667.363835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.235 3.765 3 H 0.056 0.944 4 C -0.517 4.517 5 H 0.082 0.918 6 C 0.079 3.921 7 N -0.888 5.888 8 Si 0.867 3.133 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.982 5.982 13 C 0.091 3.909 14 S 2.769 3.231 15 O -0.977 6.977 16 O -0.993 6.993 17 N -1.129 6.129 18 C 0.152 3.848 19 H 0.091 0.909 20 C -0.183 4.183 21 C 0.061 3.939 22 O -0.374 6.374 23 C 0.113 3.887 24 C -0.137 4.137 25 C -0.184 4.184 26 C -0.146 4.146 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.028 0.972 30 H 0.267 0.733 31 H 0.038 0.962 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.411 0.589 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.774 0.594 19.926 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.132 3.868 3 H 0.073 0.927 4 C -0.557 4.557 5 H 0.100 0.900 6 C -0.126 4.126 7 N -0.525 5.525 8 Si 0.693 3.307 9 H -0.190 1.190 10 H -0.213 1.213 11 H -0.189 1.189 12 N -0.824 5.824 13 C -0.055 4.055 14 S 2.779 3.221 15 O -0.961 6.961 16 O -0.977 6.977 17 N -0.886 5.886 18 C 0.045 3.955 19 H 0.109 0.891 20 C -0.222 4.222 21 C -0.016 4.016 22 O -0.293 6.293 23 C 0.073 3.927 24 C -0.194 4.194 25 C -0.242 4.242 26 C -0.185 4.185 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.243 0.757 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.871 0.537 19.814 20.978 hybrid contribution -0.162 1.305 -0.392 1.372 sum -7.033 1.841 19.421 20.738 Atomic orbital electron populations 1.22280 0.98240 1.01204 0.98990 1.19097 0.91189 0.93196 0.83334 0.92656 1.21128 1.44235 0.95944 0.94406 0.89963 1.24988 0.93832 0.98440 0.95306 1.69880 1.44817 1.36097 1.01715 0.87015 0.80148 0.86321 0.77175 1.18991 1.21253 1.18898 1.57889 1.69883 1.19812 1.34841 1.21417 0.98758 0.82384 1.02966 1.02350 0.73850 0.73326 0.72575 1.93605 1.74411 1.56129 1.71941 1.93526 1.69158 1.60571 1.74419 1.56352 1.61963 1.17239 1.53011 1.20763 0.91055 0.94346 0.89380 0.89071 1.22960 0.95839 1.02799 1.00639 1.22584 1.00893 0.94948 0.83191 1.87961 1.28684 1.79190 1.33457 1.21452 0.83915 0.94520 0.92771 1.21747 1.02393 1.00860 0.94377 1.22512 1.01624 0.97124 1.02905 1.22492 1.00864 1.00184 0.94942 0.92792 0.92832 0.95345 0.92312 0.94410 0.89531 0.91619 0.75665 0.90310 0.88891 0.88507 0.92608 0.91730 0.91086 0.91809 0.91582 0.91201 0.91627 0.90175 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.98 37.16 0.33 -2.46 16 2 C 0.24 5.25 2.28 -69.08 -0.16 5.10 16 3 H 0.06 1.33 4.06 -51.93 -0.21 1.11 16 4 C -0.52 -13.80 8.72 -34.44 -0.30 -14.10 16 5 H 0.08 2.33 6.82 -52.49 -0.36 1.97 16 6 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 7 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 8 Si 0.87 21.58 26.99 -169.99 -4.59 16.99 16 9 H -0.26 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.26 -6.12 6.82 56.52 0.39 -5.74 16 12 N -0.98 -19.06 2.88 -115.85 -0.33 -19.39 16 13 C 0.09 1.50 9.58 59.85 0.57 2.07 16 14 S 2.77 52.60 6.12 -107.50 -0.66 51.94 16 15 O -0.98 -22.37 16.70 -57.17 -0.95 -23.32 16 16 O -0.99 -20.15 16.08 -57.17 -0.92 -21.07 16 17 N -1.13 -15.72 5.54 -4.73 -0.03 -15.74 16 18 C 0.15 1.82 2.59 -67.74 -0.18 1.64 16 19 H 0.09 1.13 5.99 -51.93 -0.31 0.82 16 20 C -0.18 -2.05 5.61 -26.59 -0.15 -2.20 16 21 C 0.06 0.60 6.52 37.21 0.24 0.84 16 22 O -0.37 -4.04 10.24 -35.23 -0.36 -4.40 16 23 C 0.11 1.06 1.11 -90.57 -0.10 0.96 16 24 C -0.14 -1.05 8.85 37.16 0.33 -0.72 16 25 C -0.18 -1.60 7.93 37.16 0.29 -1.31 16 26 C -0.15 -1.45 4.46 -26.59 -0.12 -1.57 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.05 0.96 7.83 -51.93 -0.41 0.56 16 29 H 0.03 0.45 7.15 -51.93 -0.37 0.08 16 30 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.04 0.49 6.13 -51.93 -0.32 0.18 16 32 H 0.09 1.53 6.56 -51.93 -0.34 1.19 16 33 H 0.07 1.05 7.02 -51.93 -0.36 0.68 16 34 H 0.41 4.96 8.84 -34.48 -0.30 4.66 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.11 4.58 -51.93 -0.24 0.88 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.50 6.34 -51.93 -0.33 0.17 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 42 H 0.07 0.61 4.98 -51.93 -0.26 0.35 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 357.67 15.07 5.39 5.39 Total: -1.00 -33.02 357.67 -8.19 -41.22 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -7.19 Total: 3.60 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 0.67 Total: -9.63 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: 0.41 Total: -60.72 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -2.23 Total: -48.79 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.59 Total: 16.99 kcal Atomic # 16 Polarization: 52.60 SS G_CDS: -0.66 Total: 51.94 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.02 -8.19 -41.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407971752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.268 kcal (2) G-P(sol) polarization free energy of solvation -33.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds