Wall clock time and date at job start Tue Mar 31 2020 12:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47074 * 2 1 4 4 C 1.50705 * 109.47080 * 239.99831 * 2 1 3 5 5 H 1.08003 * 119.99704 * 239.99924 * 4 2 1 6 6 C 1.37877 * 120.00208 * 59.99914 * 4 2 1 7 7 N 1.31519 * 119.99684 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00237 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47066 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47228 * 120.00217 * 8 6 4 11 11 H 1.48501 * 109.47359 * 240.00159 * 8 6 4 12 12 N 1.46507 * 109.47179 * 120.00120 * 2 1 3 13 13 C 1.46492 * 119.99894 * 59.99667 * 12 2 1 14 14 S 1.65593 * 119.99646 * 240.00103 * 12 2 1 15 15 O 1.42103 * 106.40136 * 156.45770 * 14 12 2 16 16 O 1.42106 * 106.40749 * 23.53940 * 14 12 2 17 17 N 1.65600 * 107.21886 * 269.99706 * 14 12 2 18 18 C 1.46506 * 119.99981 * 65.00240 * 17 14 12 19 19 H 1.08995 * 109.61037 * 335.22202 * 18 17 14 20 20 C 1.53174 * 109.54281 * 95.44222 * 18 17 14 21 21 C 1.53097 * 109.16185 * 176.84548 * 20 18 17 22 22 O 1.42902 * 109.41493 * 302.39739 * 21 20 18 23 23 C 1.43035 * 114.13534 * 61.15611 * 22 21 20 24 24 C 1.53000 * 109.56787 * 178.89038 * 23 22 21 25 25 C 1.53001 * 109.46309 * 58.81150 * 23 22 21 26 26 C 1.53091 * 109.34424 * 298.88074 * 23 22 21 27 27 H 1.09004 * 109.46991 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47087 * 300.00344 * 1 2 3 29 29 H 1.08994 * 109.46887 * 60.00399 * 1 2 3 30 30 H 0.96999 * 119.99577 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47710 * 270.00162 * 13 12 2 32 32 H 1.09004 * 109.47360 * 30.00504 * 13 12 2 33 33 H 1.09008 * 109.46843 * 150.00487 * 13 12 2 34 34 H 0.97002 * 120.00148 * 245.00172 * 17 14 12 35 35 H 1.08995 * 109.52612 * 296.75680 * 20 18 17 36 36 H 1.09001 * 109.51989 * 56.94377 * 20 18 17 37 37 H 1.08997 * 109.47580 * 62.37620 * 21 20 18 38 38 H 1.08994 * 109.47934 * 182.41016 * 21 20 18 39 39 H 1.08995 * 109.47155 * 179.91107 * 24 23 22 40 40 H 1.09011 * 109.46982 * 299.91214 * 24 23 22 41 41 H 1.09002 * 109.47436 * 59.90472 * 24 23 22 42 42 H 1.09000 * 109.46897 * 300.15285 * 25 23 22 43 43 H 1.09000 * 109.46893 * 60.15662 * 25 23 22 44 44 H 1.09004 * 109.47002 * 180.15040 * 25 23 22 45 45 H 1.09002 * 109.52401 * 297.63932 * 26 23 22 46 46 H 1.09004 * 109.52068 * 177.51577 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4828 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1197 -4.0079 9 1 3.1475 -2.2865 -3.6037 10 1 1.1679 -1.5867 -4.8165 11 1 3.1473 -0.1859 -4.8161 12 7 2.0184 -0.6907 1.1962 13 6 1.6644 -2.0931 1.4280 14 16 2.9704 0.1142 2.2862 15 8 2.8228 -0.5646 3.5259 16 8 2.6904 1.4973 2.1193 17 7 4.5438 -0.1042 1.8180 18 6 5.0140 0.4530 0.5472 19 1 4.1711 0.5744 -0.1331 20 6 5.6715 1.8138 0.7965 21 6 6.2292 2.3518 -0.5238 22 8 7.1575 1.4104 -1.0661 23 6 6.5879 0.1327 -1.3642 24 6 7.6608 -0.7800 -1.9615 25 6 5.4470 0.3050 -2.3690 26 6 6.0444 -0.4930 -0.0770 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7090 1.1612 -3.4845 31 1 0.7376 -2.1444 1.9993 32 1 1.5295 -2.5969 0.4708 33 1 2.4629 -2.5819 1.9864 34 1 5.1541 -0.6011 2.3851 35 1 4.9305 2.5099 1.1896 36 1 6.4830 1.7000 1.5153 37 1 5.4118 2.5036 -1.2287 38 1 6.7359 3.3001 -0.3448 39 1 7.2255 -1.7535 -2.1866 40 1 8.0477 -0.3343 -2.8780 41 1 8.4737 -0.9021 -1.2457 42 1 4.6831 0.9556 -1.9433 43 1 5.8342 0.7504 -3.2854 44 1 5.0111 -0.6684 -2.5942 45 1 6.8634 -0.6534 0.6242 46 1 5.5703 -1.4470 -0.3077 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407971753.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:02 Heat of formation + Delta-G solvation = -132.233853 kcal Electronic energy + Delta-G solvation = -28555.367885 eV Core-core repulsion = 24799.587542 eV Total energy + Delta-G solvation = -3755.780343 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.83232 -36.72240 -36.19176 -35.36730 -35.23804 -33.38299 -32.67206 -30.63353 -29.12672 -27.55919 -27.11154 -25.55821 -25.24433 -23.60755 -21.59636 -20.79348 -19.36060 -18.62651 -17.19882 -16.85752 -16.51437 -16.19837 -15.90466 -15.24388 -14.87814 -14.49458 -14.35167 -14.06136 -13.61695 -13.49439 -13.22425 -12.86915 -12.72133 -12.28762 -12.04702 -11.97328 -11.82821 -11.82405 -11.59750 -11.53928 -11.43015 -11.33438 -11.28010 -11.14041 -11.00941 -10.94967 -10.85220 -10.82165 -10.42853 -10.26683 -10.12486 -9.78829 -9.39486 -9.26698 -9.06580 -8.56632 -8.00977 -6.18005 -4.26599 1.24336 3.15163 3.24974 3.26104 3.49046 3.94140 4.13220 4.26263 4.85202 4.94683 4.99026 5.07123 5.12379 5.25758 5.27284 5.44381 5.57023 5.62562 5.67997 5.77062 5.85141 5.87669 5.92803 6.06938 6.07634 6.14919 6.16330 6.28180 6.29387 6.36252 6.43750 6.54918 6.62485 6.73494 6.84103 6.84825 7.07268 7.25160 7.48051 7.49528 7.56384 7.70667 7.98197 8.18386 8.77428 9.40063 10.86690 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009761 B = 0.008806 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.728880 B = 3178.853633 C = 5036.516806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.266 3.734 3 H 0.058 0.942 4 C -0.525 4.525 5 H 0.064 0.936 6 C 0.071 3.929 7 N -0.882 5.882 8 Si 0.883 3.117 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.280 1.280 12 N -0.991 5.991 13 C 0.109 3.891 14 S 2.780 3.220 15 O -1.002 7.002 16 O -0.981 6.981 17 N -1.125 6.125 18 C 0.150 3.850 19 H 0.114 0.886 20 C -0.172 4.172 21 C 0.060 3.940 22 O -0.379 6.379 23 C 0.115 3.885 24 C -0.135 4.135 25 C -0.182 4.182 26 C -0.141 4.141 27 H 0.032 0.968 28 H 0.011 0.989 29 H 0.092 0.908 30 H 0.263 0.737 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.406 0.594 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.482 -2.510 2.634 10.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.075 0.925 4 C -0.564 4.564 5 H 0.082 0.918 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.710 3.290 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.205 1.205 12 N -0.834 5.834 13 C -0.038 4.038 14 S 2.789 3.211 15 O -0.986 6.986 16 O -0.964 6.964 17 N -0.881 5.881 18 C 0.042 3.958 19 H 0.131 0.869 20 C -0.212 4.212 21 C -0.017 4.017 22 O -0.298 6.298 23 C 0.075 3.925 24 C -0.192 4.192 25 C -0.240 4.240 26 C -0.180 4.180 27 H 0.051 0.949 28 H 0.031 0.969 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.238 0.762 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.146 -1.742 3.117 9.818 hybrid contribution 0.303 -1.015 -0.917 1.401 sum 9.448 -2.757 2.201 10.085 Atomic orbital electron populations 1.22048 0.97989 0.99677 1.00737 1.18767 0.92031 0.92616 0.80318 0.92458 1.21378 1.31990 1.13140 0.89939 0.91787 1.24858 0.94887 0.94826 0.98686 1.69885 1.35956 1.22455 1.23725 0.86718 0.78849 0.79945 0.83452 1.19572 1.21201 1.20546 1.57707 1.64470 1.21430 1.39799 1.21160 0.98923 0.81931 1.01787 1.01890 0.72716 0.73802 0.72706 1.93544 1.86012 1.76187 1.42830 1.93579 1.83954 1.32385 1.86472 1.56150 1.30415 1.70457 1.31114 1.20924 0.98684 0.91712 0.84436 0.86865 1.22741 1.01409 0.98220 0.98787 1.22562 0.93556 0.91911 0.93695 1.87914 1.36453 1.22374 1.83075 1.21475 0.93581 0.83950 0.93472 1.21738 0.98022 0.98447 1.01024 1.22516 0.98511 1.03944 0.98987 1.22426 0.98592 0.99786 0.97184 0.94871 0.96941 0.88921 0.92630 0.93968 0.90200 0.93250 0.76206 0.89560 0.91248 0.92039 0.88978 0.91130 0.91931 0.92171 0.90327 0.92420 0.91086 0.91278 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.97 37.16 0.33 -2.99 16 2 C 0.27 6.07 1.93 -69.07 -0.13 5.94 16 3 H 0.06 1.45 6.74 -51.93 -0.35 1.10 16 4 C -0.53 -12.23 7.34 -34.44 -0.25 -12.48 16 5 H 0.06 1.46 7.33 -52.48 -0.38 1.08 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.88 -22.67 11.32 55.43 0.63 -22.04 16 8 Si 0.88 19.06 28.47 -169.99 -4.84 14.22 16 9 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 10 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 12 N -0.99 -19.68 3.12 -115.85 -0.36 -20.04 16 13 C 0.11 1.88 9.28 59.84 0.56 2.43 16 14 S 2.78 53.29 6.00 -107.50 -0.65 52.65 16 15 O -1.00 -20.42 17.21 -57.17 -0.98 -21.40 16 16 O -0.98 -21.65 16.08 -57.17 -0.92 -22.57 16 17 N -1.12 -17.54 5.54 -4.73 -0.03 -17.57 16 18 C 0.15 2.39 2.46 -67.75 -0.17 2.23 16 19 H 0.11 2.13 4.89 -51.93 -0.25 1.88 16 20 C -0.17 -2.58 5.75 -26.59 -0.15 -2.73 16 21 C 0.06 0.86 6.52 37.21 0.24 1.10 16 22 O -0.38 -5.67 10.24 -35.23 -0.36 -6.03 16 23 C 0.12 1.65 1.11 -90.57 -0.10 1.55 16 24 C -0.14 -1.62 8.85 37.16 0.33 -1.29 16 25 C -0.18 -2.96 7.94 37.16 0.29 -2.66 16 26 C -0.14 -1.98 4.45 -26.59 -0.12 -2.09 16 27 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 30 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.39 7.02 -51.93 -0.36 1.02 16 33 H 0.05 0.75 7.79 -51.92 -0.40 0.34 16 34 H 0.41 5.23 8.84 -34.47 -0.30 4.93 16 35 H 0.09 1.39 7.75 -51.93 -0.40 0.99 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.94 6.34 -51.93 -0.33 0.61 16 38 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 1.42 4.98 -51.93 -0.26 1.16 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.07 1.19 7.03 -51.93 -0.36 0.83 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 361.39 15.07 5.45 5.45 Total: -1.00 -28.46 361.39 -8.82 -37.28 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -7.49 Total: 9.44 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 0.74 Total: -9.38 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 0.24 Total: -59.64 kcal Atomic # 8 Polarization: -47.73 SS G_CDS: -2.26 Total: -50.00 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.84 Total: 14.22 kcal Atomic # 16 Polarization: 53.29 SS G_CDS: -0.65 Total: 52.65 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.46 -8.82 -37.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407971753.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.957 kcal (2) G-P(sol) polarization free energy of solvation -28.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds