Wall clock time and date at job start Tue Mar 31 2020 12:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47307 * 2 1 4 4 C 1.53001 * 109.47366 * 239.99871 * 2 1 3 5 5 C 1.50698 * 109.46649 * 65.46416 * 4 2 1 6 6 H 1.07997 * 120.00560 * 5.07856 * 5 4 2 7 7 C 1.37881 * 119.99698 * 185.07366 * 5 4 2 8 8 N 1.31521 * 119.99959 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00230 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47048 * 90.00161 * 9 7 5 11 11 H 1.48500 * 109.47290 * 210.00317 * 9 7 5 12 12 H 1.48502 * 109.47345 * 330.00533 * 9 7 5 13 13 N 1.46904 * 109.47242 * 119.99756 * 2 1 3 14 14 C 1.48804 * 111.18651 * 179.35147 * 13 2 1 15 15 C 1.54941 * 103.34633 * 159.50666 * 14 13 2 16 16 C 1.54593 * 102.92256 * 322.69077 * 15 14 13 17 17 H 1.08998 * 110.39005 * 140.91537 * 16 15 14 18 18 N 1.46495 * 110.30649 * 263.04146 * 16 15 14 19 19 C 1.39004 * 120.00056 * 270.71237 * 18 16 15 20 20 C 1.39139 * 119.70506 * 359.73505 * 19 18 16 21 21 C 1.38306 * 119.09481 * 179.75080 * 20 19 18 22 22 C 1.38873 * 118.50499 * 0.51264 * 21 20 19 23 23 N 1.48008 * 120.33471 * 179.75057 * 22 21 20 24 24 O 1.21801 * 120.00102 * 179.97438 * 23 22 21 25 25 O 1.21801 * 119.99955 * 359.97438 * 23 22 21 26 26 C 1.38017 * 119.33333 * 359.72469 * 22 21 20 27 27 N 1.31973 * 120.85836 * 0.02757 * 26 22 21 28 28 C 1.47901 * 110.99822 * 296.69299 * 13 2 1 29 29 H 1.09000 * 109.47307 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47375 * 300.00096 * 1 2 3 31 31 H 1.09001 * 109.46990 * 59.99953 * 1 2 3 32 32 H 1.08998 * 109.46781 * 185.46379 * 4 2 1 33 33 H 1.09000 * 109.46872 * 305.46631 * 4 2 1 34 34 H 0.96998 * 120.00173 * 179.97438 * 8 7 5 35 35 H 1.08999 * 110.51992 * 41.07725 * 14 13 2 36 36 H 1.08996 * 110.70032 * 278.02103 * 14 13 2 37 37 H 1.08998 * 110.72279 * 204.32755 * 15 14 13 38 38 H 1.08999 * 110.72222 * 81.05445 * 15 14 13 39 39 H 0.97000 * 119.99993 * 90.71856 * 18 16 15 40 40 H 1.07996 * 120.45356 * 359.97438 * 20 19 18 41 41 H 1.07993 * 120.74223 * 180.23646 * 21 20 19 42 42 H 1.08004 * 119.57479 * 180.02562 * 26 22 21 43 43 H 1.09007 * 109.91821 * 94.80220 * 28 13 2 44 44 H 1.08995 * 109.91920 * 333.70218 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6512 0.0630 -2.4759 6 1 1.1685 1.0235 -2.3723 7 6 1.9118 -0.4458 -3.7306 8 7 2.4992 -1.6157 -3.8569 9 14 1.4292 0.5259 -5.2513 10 1 2.5522 1.4122 -5.6494 11 1 1.1213 -0.4118 -6.3608 12 1 0.2304 1.3499 -4.9525 13 7 2.0196 -0.6925 1.1995 14 6 3.5069 -0.7283 1.2302 15 6 3.8278 -0.9796 2.7251 16 6 2.7459 -0.1510 3.4549 17 1 2.3836 -0.6877 4.3317 18 7 3.2829 1.1550 3.8452 19 6 3.9078 1.3095 5.0772 20 6 4.0150 0.2211 5.9373 21 6 4.6438 0.3878 7.1578 22 6 5.1367 1.6447 7.4832 23 7 5.8119 1.8699 8.7809 24 8 6.2423 2.9746 9.0599 25 8 5.9370 0.9505 9.5699 26 6 4.9912 2.6816 6.5840 27 7 4.3910 2.4924 5.4240 28 6 1.6115 0.0227 2.4281 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.1256 -0.8067 -1.2015 33 1 1.5989 -1.7168 -1.2995 34 1 2.6822 -1.9738 -4.7395 35 1 3.9190 0.2264 0.9035 36 1 3.8855 -1.5432 0.6133 37 1 4.8249 -0.6150 2.9721 38 1 3.7321 -2.0380 2.9675 39 1 3.2023 1.9118 3.2439 40 1 3.6159 -0.7416 5.6542 41 1 4.7452 -0.4398 7.8442 42 1 5.3735 3.6606 6.8329 43 1 0.6885 -0.4063 2.8183 44 1 1.4661 1.0809 2.2108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411372749.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:12 Heat of formation + Delta-G solvation = 41.260605 kcal Electronic energy + Delta-G solvation = -26150.574573 eV Core-core repulsion = 22299.166314 eV Total energy + Delta-G solvation = -3851.408259 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.37841 -40.96422 -39.34799 -36.72792 -36.29429 -34.01861 -33.30158 -32.19898 -30.92598 -29.22130 -28.43708 -26.82144 -26.12810 -24.65639 -23.60249 -22.79874 -21.83825 -20.69818 -19.61426 -19.40318 -19.00445 -18.25694 -17.70966 -17.26207 -16.77936 -16.00937 -15.63374 -15.19843 -14.91738 -14.58082 -14.28014 -14.07346 -14.00183 -13.65413 -13.39091 -12.82695 -12.66641 -12.20652 -12.07102 -11.76368 -11.64456 -11.56525 -11.49381 -11.32649 -11.17050 -11.08836 -10.98782 -10.90146 -10.84338 -10.58014 -10.48187 -10.33427 -10.04154 -9.36920 -9.23512 -8.61492 -8.44213 -8.09592 -6.09703 -4.12113 -0.36883 0.48115 1.11602 1.20408 2.37539 3.01189 3.24337 3.31549 3.33620 3.79335 3.97316 4.04633 4.11918 4.26972 4.29290 4.43812 4.47068 4.70697 4.92747 5.03292 5.11000 5.22971 5.26442 5.30833 5.38453 5.56664 5.64188 5.70862 5.81480 5.88239 6.00592 6.14497 6.15482 6.20660 6.26290 6.47863 6.69988 6.78633 6.96151 7.20522 7.27751 7.31847 7.46593 7.58694 7.72654 7.93638 8.30988 8.93924 9.51762 11.01460 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031950 B = 0.002084 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.147300 B =13433.035319 C =13595.918385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.077 3.923 3 H 0.029 0.971 4 C 0.033 3.967 5 C -0.520 4.520 6 H 0.054 0.946 7 C 0.059 3.941 8 N -0.892 5.892 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.509 5.509 14 C 0.041 3.959 15 C -0.139 4.139 16 C 0.130 3.870 17 H 0.098 0.902 18 N -0.687 5.687 19 C 0.448 3.552 20 C -0.236 4.236 21 C 0.029 3.971 22 C -0.173 4.173 23 N 0.049 4.951 24 O -0.174 6.174 25 O -0.176 6.176 26 C 0.237 3.763 27 N -0.534 5.534 28 C 0.031 3.969 29 H 0.056 0.944 30 H 0.029 0.971 31 H 0.067 0.933 32 H 0.013 0.987 33 H 0.029 0.971 34 H 0.261 0.739 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.413 0.587 40 H 0.157 0.843 41 H 0.161 0.839 42 H 0.183 0.817 43 H 0.089 0.911 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.203 3.238 20.416 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.030 4.030 3 H 0.047 0.953 4 C -0.004 4.004 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.531 5.531 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.234 5.234 14 C -0.087 4.087 15 C -0.178 4.178 16 C 0.025 3.975 17 H 0.116 0.884 18 N -0.314 5.314 19 C 0.209 3.791 20 C -0.262 4.262 21 C 0.003 3.997 22 C -0.264 4.264 23 N 0.563 4.437 24 O -0.386 6.386 25 O -0.388 6.388 26 C 0.073 3.927 27 N -0.252 5.252 28 C -0.098 4.098 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.032 0.968 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.251 0.749 40 H 0.174 0.826 41 H 0.179 0.821 42 H 0.200 0.800 43 H 0.107 0.893 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.489 2.927 18.939 19.222 hybrid contribution 0.332 1.014 -0.358 1.126 sum 1.820 3.942 18.581 19.081 Atomic orbital electron populations 1.21720 0.95007 1.01773 1.00176 1.22078 0.95353 0.95165 0.90386 0.95328 1.19140 0.96002 0.96271 0.89033 1.21148 1.39398 1.04491 0.90828 0.92750 1.24989 0.95233 0.94965 0.99091 1.69960 1.42172 1.17544 1.23419 0.86616 0.78867 0.79833 0.82816 1.20718 1.21169 1.19892 1.65045 1.08295 1.48666 1.01417 1.23214 0.88967 1.01581 0.94932 1.23067 0.97879 1.00668 0.96191 1.22237 0.94531 0.82106 0.98593 0.88421 1.45279 1.57798 1.13359 1.14985 1.18826 0.85228 0.88933 0.86146 1.21530 1.08843 1.00950 0.94870 1.21183 0.88042 0.95102 0.95351 1.21841 1.15973 0.99195 0.89367 1.43296 0.98290 1.00218 1.01884 1.94534 1.51003 1.11118 1.81970 1.94529 1.62413 1.36348 1.45499 1.22459 0.86787 0.98292 0.85164 1.67668 1.16916 1.22675 1.17989 1.23132 0.97080 0.98251 0.91312 0.92509 0.95193 0.91368 0.96834 0.95286 0.92935 0.93798 0.89055 0.90781 0.89379 0.74949 0.82589 0.82107 0.80036 0.89263 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.97 37.15 0.33 -1.91 16 2 C 0.08 1.44 1.78 -67.71 -0.12 1.32 16 3 H 0.03 0.55 7.99 -51.93 -0.41 0.13 16 4 C 0.03 0.79 4.42 -27.88 -0.12 0.66 16 5 C -0.52 -13.78 8.31 -34.44 -0.29 -14.06 16 6 H 0.05 1.40 7.28 -52.49 -0.38 1.02 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 9 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.51 -7.69 5.11 -222.26 -1.14 -8.83 16 14 C 0.04 0.57 5.40 -1.74 -0.01 0.56 16 15 C -0.14 -1.35 6.79 -24.87 -0.17 -1.52 16 16 C 0.13 1.12 3.03 -66.58 -0.20 0.91 16 17 H 0.10 0.65 6.37 -51.93 -0.33 0.32 16 18 N -0.69 -5.89 5.23 -52.62 -0.28 -6.16 16 19 C 0.45 3.97 7.65 -155.02 -1.19 2.78 16 20 C -0.24 -1.72 9.24 -39.22 -0.36 -2.08 16 21 C 0.03 0.22 9.66 -39.32 -0.38 -0.16 16 22 C -0.17 -1.63 6.87 -79.80 -0.55 -2.18 16 23 N 0.05 0.56 4.45 34.04 0.15 0.71 16 24 O -0.17 -2.10 18.46 -29.46 -0.54 -2.65 16 25 O -0.18 -2.14 18.52 -29.46 -0.55 -2.68 16 26 C 0.24 2.11 10.71 -17.57 -0.19 1.93 16 27 N -0.53 -5.22 10.39 -12.44 -0.13 -5.35 16 28 C 0.03 0.35 5.26 -2.75 -0.01 0.33 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.03 0.43 7.25 -51.93 -0.38 0.05 16 31 H 0.07 1.28 7.09 -51.93 -0.37 0.91 16 32 H 0.01 0.34 6.66 -51.93 -0.35 -0.01 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.04 0.65 8.01 -51.93 -0.42 0.24 16 36 H 0.09 1.44 7.56 -51.93 -0.39 1.05 16 37 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.41 3.69 8.46 -40.82 -0.35 3.35 16 40 H 0.16 0.82 6.19 -52.49 -0.32 0.50 16 41 H 0.16 0.94 7.69 -52.49 -0.40 0.54 16 42 H 0.18 1.29 7.61 -52.48 -0.40 0.89 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.58 7.11 -51.93 -0.37 0.21 16 LS Contribution 364.06 15.07 5.49 5.49 Total: -1.00 -29.99 364.06 -10.74 -40.73 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.11 Total: -0.20 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -3.35 Total: -11.89 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -0.65 Total: -44.65 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -1.09 Total: -5.33 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.99 -10.74 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411372749.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.991 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds