Wall clock time and date at job start Tue Mar 31 2020 12:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47516 * 2 1 4 4 C 1.53001 * 109.46801 * 239.99988 * 2 1 3 5 5 C 1.50704 * 109.47211 * 176.57445 * 4 2 1 6 6 H 1.08001 * 119.99657 * 355.40680 * 5 4 2 7 7 C 1.37870 * 120.00372 * 175.41257 * 5 4 2 8 8 N 1.31515 * 120.00019 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00102 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46901 * 90.00005 * 9 7 5 11 11 H 1.48496 * 109.47504 * 210.00363 * 9 7 5 12 12 H 1.48502 * 109.46740 * 330.00655 * 9 7 5 13 13 N 1.46896 * 109.46997 * 120.00470 * 2 1 3 14 14 C 1.46955 * 110.99802 * 295.09291 * 13 2 1 15 15 C 1.53050 * 109.36695 * 183.16867 * 14 13 2 16 16 N 1.46955 * 109.38376 * 301.63700 * 15 14 13 17 17 C 1.39009 * 111.00209 * 183.17197 * 16 15 14 18 18 N 1.32417 * 119.70731 * 295.40563 * 17 16 15 19 19 C 1.31950 * 121.62524 * 179.97438 * 18 17 16 20 20 C 1.38068 * 120.85278 * 359.97438 * 19 18 17 21 21 C 1.38835 * 119.32656 * 0.02562 * 20 19 18 22 22 C 1.38345 * 118.51139 * 359.72551 * 21 20 19 23 23 N 1.47996 * 120.45784 * 180.28856 * 22 21 20 24 24 O 1.21796 * 119.99605 * 5.13582 * 23 22 21 25 25 O 1.21798 * 120.00211 * 185.13397 * 23 22 21 26 26 C 1.46959 * 110.88085 * 59.30402 * 16 15 14 27 27 C 1.46955 * 111.00439 * 58.91986 * 13 2 1 28 28 H 1.08998 * 109.47464 * 60.00257 * 1 2 3 29 29 H 1.09008 * 109.47320 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47325 * 299.99758 * 1 2 3 31 31 H 1.09001 * 109.47498 * 296.57406 * 4 2 1 32 32 H 1.08997 * 109.47029 * 56.57858 * 4 2 1 33 33 H 0.97006 * 119.99980 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47270 * 63.21955 * 14 13 2 35 35 H 1.09000 * 109.50886 * 303.14662 * 14 13 2 36 36 H 1.08998 * 109.49678 * 181.65572 * 15 14 13 37 37 H 1.08999 * 109.48851 * 61.60980 * 15 14 13 38 38 H 1.08001 * 119.57327 * 180.02562 * 19 18 17 39 39 H 1.07995 * 120.33571 * 180.02562 * 20 19 18 40 40 H 1.07997 * 120.75124 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.48828 * 60.64952 * 26 16 15 42 42 H 1.09007 * 109.48804 * 180.69186 * 26 16 15 43 43 H 1.08999 * 109.49091 * 56.84123 * 27 13 2 44 44 H 1.09003 * 109.48618 * 296.77991 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5445 -0.6482 -1.2925 6 1 4.0790 -0.0759 -0.5487 7 6 4.2388 -1.3119 -2.2816 8 7 5.5519 -1.2485 -2.3190 9 14 3.3146 -2.3023 -3.5679 10 1 2.9906 -1.4303 -4.7253 11 1 4.1605 -3.4348 -4.0227 12 1 2.0577 -2.8290 -2.9779 13 7 2.0196 -0.6926 1.1993 14 6 1.6466 0.0381 2.4186 15 6 2.2411 -0.6714 3.6374 16 7 1.7489 -2.0553 3.6844 17 6 2.2123 -2.7106 4.8193 18 7 3.5101 -2.9277 4.9678 19 6 3.9912 -3.5455 6.0298 20 6 3.1513 -3.9900 7.0314 21 6 1.7836 -3.7821 6.9141 22 6 1.3091 -3.1270 5.7919 23 7 -0.1401 -2.8769 5.6259 24 8 -0.9141 -3.1640 6.5214 25 8 -0.5588 -2.3839 4.5938 26 6 2.1224 -2.7857 2.4651 27 6 1.5274 -2.0765 1.2463 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.7276 -1.7651 -1.2191 32 1 1.6273 -0.2441 -2.1381 33 1 6.0404 -1.7158 -3.0148 34 1 0.5606 0.0656 2.5078 35 1 2.0334 1.0558 2.3657 36 1 1.9412 -0.1478 4.5452 37 1 3.3284 -0.6746 3.5618 38 1 5.0558 -3.7047 6.1172 39 1 3.5541 -4.4943 7.8973 40 1 1.1056 -4.1207 7.6836 41 1 3.2084 -2.8128 2.3757 42 1 1.7363 -3.8037 2.5183 43 1 1.8273 -2.6001 0.3385 44 1 0.4401 -2.0733 1.3222 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411853952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:15 Heat of formation + Delta-G solvation = 73.642579 kcal Electronic energy + Delta-G solvation = -28041.121606 eV Core-core repulsion = 24191.117535 eV Total energy + Delta-G solvation = -3850.004071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.28894 -40.89332 -39.07322 -36.67406 -36.14989 -33.45052 -32.95669 -31.84915 -30.78933 -30.10262 -27.82423 -26.89356 -25.92373 -23.66064 -23.50326 -22.93533 -22.41092 -20.19807 -19.42428 -18.80723 -18.62366 -17.65801 -17.50749 -16.86579 -16.56112 -15.84406 -15.41619 -15.05039 -14.53799 -14.33545 -14.16762 -13.91629 -13.73971 -13.70064 -13.24942 -12.89766 -12.41308 -12.11742 -11.93730 -11.63148 -11.50977 -11.37697 -11.24468 -11.18070 -11.01538 -10.82201 -10.74981 -10.67101 -10.50879 -10.37762 -10.12479 -9.79461 -9.59968 -9.47670 -9.00893 -8.72561 -8.42307 -7.49256 -5.90654 -3.84647 -0.43066 0.36737 1.19713 1.31502 2.92651 3.13044 3.35519 3.43563 3.45411 3.82254 3.99882 4.13637 4.34549 4.45879 4.54230 4.57247 4.96340 5.09108 5.23017 5.28259 5.41369 5.44596 5.54022 5.61285 5.71761 5.73087 5.75439 5.90352 5.91958 5.99766 6.16841 6.28196 6.35301 6.38881 6.50539 6.59377 6.80752 6.81819 6.88240 7.12281 7.14977 7.34992 7.71035 7.78420 7.81965 7.96911 8.72214 9.21945 9.72375 11.23358 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017209 B = 0.003768 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.666702 B = 7429.194063 C = 8231.189439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.098 3.902 3 H 0.075 0.925 4 C -0.010 4.010 5 C -0.489 4.489 6 H 0.078 0.922 7 C 0.062 3.938 8 N -0.908 5.908 9 Si 0.870 3.130 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.267 1.267 13 N -0.509 5.509 14 C 0.057 3.943 15 C 0.069 3.931 16 N -0.483 5.483 17 C 0.376 3.624 18 N -0.494 5.494 19 C 0.161 3.839 20 C -0.183 4.183 21 C -0.011 4.011 22 C -0.081 4.081 23 N 0.032 4.968 24 O -0.201 6.201 25 O -0.086 6.086 26 C 0.068 3.932 27 C 0.060 3.940 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.019 0.981 32 H 0.014 0.986 33 H 0.259 0.741 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.176 0.824 39 H 0.158 0.842 40 H 0.164 0.836 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.740 -4.922 20.088 21.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.010 4.010 3 H 0.094 0.906 4 C -0.048 4.048 5 C -0.527 4.527 6 H 0.096 0.904 7 C -0.137 4.137 8 N -0.549 5.549 9 Si 0.699 3.301 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.192 1.192 13 N -0.232 5.232 14 C -0.072 4.072 15 C -0.057 4.057 16 N -0.208 5.208 17 C 0.146 3.854 18 N -0.206 5.206 19 C 0.002 3.998 20 C -0.203 4.203 21 C -0.037 4.037 22 C -0.169 4.169 23 N 0.554 4.446 24 O -0.403 6.403 25 O -0.319 6.319 26 C -0.058 4.058 27 C -0.068 4.068 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.193 0.807 39 H 0.176 0.824 40 H 0.181 0.819 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.114 0.886 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.333 -4.854 19.515 20.805 hybrid contribution -1.234 -0.915 -0.043 1.537 sum -6.568 -5.770 19.472 21.345 Atomic orbital electron populations 1.22553 0.99394 1.01605 1.01091 1.21648 0.90102 0.98427 0.90839 0.90635 1.19745 0.97972 0.95408 0.91657 1.21042 0.89140 1.30359 1.12151 0.90378 1.24997 0.94630 0.96557 0.97530 1.69915 1.06129 1.44403 1.34412 0.86937 0.80225 0.80375 0.82604 1.20579 1.21697 1.19227 1.62248 1.58864 1.01161 1.00971 1.22114 0.98504 0.97275 0.89313 1.22211 0.99424 0.85296 0.98772 1.60737 1.56510 1.03430 1.00118 1.19980 0.86149 0.88599 0.90680 1.68450 1.13458 1.14747 1.23979 1.23250 1.01632 0.87861 0.87047 1.22251 0.92221 1.03611 1.02220 1.21538 0.96978 0.90703 0.94517 1.22067 0.82348 1.11859 1.00604 1.43194 1.02189 0.98778 1.00423 1.94516 1.52765 1.57069 1.35920 1.94659 1.80803 1.40369 1.16117 1.22269 1.00752 0.96038 0.86766 1.22143 0.97244 0.90503 0.96950 0.92627 0.92748 0.93367 0.96266 0.96815 0.93123 0.93751 0.90236 0.91409 0.91889 0.80694 0.82399 0.81853 0.91464 0.91227 0.88645 0.93960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.03 8.49 37.16 0.32 -2.72 16 2 C 0.10 1.88 2.32 -67.72 -0.16 1.73 16 3 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 4 C -0.01 -0.24 3.33 -27.88 -0.09 -0.33 16 5 C -0.49 -13.58 9.35 -34.44 -0.32 -13.90 16 6 H 0.08 2.39 7.99 -52.49 -0.42 1.97 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 8 N -0.91 -28.07 13.96 55.43 0.77 -27.30 16 9 Si 0.87 21.65 27.56 -169.99 -4.69 16.97 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.27 -6.35 6.41 56.52 0.36 -5.99 16 13 N -0.51 -9.39 4.37 -226.50 -0.99 -10.38 16 14 C 0.06 0.87 5.25 -3.77 -0.02 0.85 16 15 C 0.07 1.00 5.46 -3.77 -0.02 0.98 16 16 N -0.48 -7.10 2.60 -173.04 -0.45 -7.55 16 17 C 0.38 4.96 5.32 -155.01 -0.83 4.13 16 18 N -0.49 -6.00 9.64 -12.43 -0.12 -6.12 16 19 C 0.16 1.26 11.18 -17.56 -0.20 1.06 16 20 C -0.18 -1.08 10.10 -39.42 -0.40 -1.48 16 21 C -0.01 -0.09 9.67 -39.32 -0.38 -0.47 16 22 C -0.08 -0.98 6.89 -79.60 -0.55 -1.53 16 23 N 0.03 0.45 4.45 34.13 0.15 0.60 16 24 O -0.20 -2.85 18.53 -29.46 -0.55 -3.39 16 25 O -0.09 -1.37 17.15 -29.46 -0.51 -1.87 16 26 C 0.07 1.08 5.41 -3.77 -0.02 1.06 16 27 C 0.06 1.05 4.82 -3.77 -0.02 1.03 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.88 6.46 -51.92 -0.34 0.54 16 30 H 0.05 0.71 6.59 -51.93 -0.34 0.37 16 31 H 0.02 0.45 4.92 -51.93 -0.26 0.19 16 32 H 0.01 0.32 7.80 -51.93 -0.41 -0.09 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.04 0.68 6.59 -51.93 -0.34 0.33 16 35 H 0.08 1.17 8.12 -51.93 -0.42 0.75 16 36 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 37 H 0.06 1.00 8.01 -51.93 -0.42 0.59 16 38 H 0.18 0.81 8.06 -52.49 -0.42 0.38 16 39 H 0.16 0.35 8.06 -52.49 -0.42 -0.08 16 40 H 0.16 1.00 7.70 -52.49 -0.40 0.60 16 41 H 0.07 1.19 7.92 -51.93 -0.41 0.78 16 42 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 43 H 0.10 1.86 6.10 -51.93 -0.32 1.54 16 44 H 0.04 0.71 6.47 -51.93 -0.34 0.38 16 LS Contribution 353.56 15.07 5.33 5.33 Total: -1.00 -32.90 353.56 -9.94 -42.84 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -6.11 Total: -1.25 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -2.78 Total: -7.88 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.63 Total: -50.74 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -1.05 Total: -5.26 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.69 Total: 16.97 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.90 -9.94 -42.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411853952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.483 kcal (2) G-P(sol) polarization free energy of solvation -32.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds