Wall clock time and date at job start Tue Mar 31 2020 12:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46742 * 2 1 4 4 C 1.53000 * 109.47136 * 119.99911 * 2 1 3 5 5 C 1.50700 * 109.47230 * 296.63860 * 4 2 1 6 6 H 1.08004 * 120.00023 * 355.83041 * 5 4 2 7 7 C 1.37879 * 119.99907 * 175.82582 * 5 4 2 8 8 N 1.31512 * 119.99993 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99798 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47303 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46746 * 120.00317 * 9 7 5 12 12 H 1.48494 * 109.47234 * 240.00173 * 9 7 5 13 13 N 1.46895 * 109.46802 * 240.00397 * 2 1 3 14 14 C 1.46960 * 110.99931 * 179.33446 * 13 2 1 15 15 C 1.53054 * 109.36581 * 176.80502 * 14 13 2 16 16 N 1.46958 * 109.35971 * 58.40493 * 15 14 13 17 17 C 1.39009 * 110.99641 * 176.81305 * 16 15 14 18 18 N 1.32424 * 119.70952 * 60.08396 * 17 16 15 19 19 C 1.31941 * 121.62257 * 180.02562 * 18 17 16 20 20 C 1.38064 * 120.85621 * 0.02562 * 19 18 17 21 21 C 1.38831 * 119.32583 * 359.97438 * 20 19 18 22 22 C 1.38342 * 118.51013 * 359.73639 * 21 20 19 23 23 N 1.47998 * 120.45383 * 180.28421 * 22 21 20 24 24 O 1.21798 * 120.00033 * 5.26015 * 23 22 21 25 25 O 1.21800 * 120.00104 * 185.26409 * 23 22 21 26 26 C 1.46960 * 110.87757 * 300.67337 * 16 15 14 27 27 C 1.46954 * 111.00417 * 55.53302 * 13 2 1 28 28 H 1.08997 * 109.47208 * 59.99463 * 1 2 3 29 29 H 1.08995 * 109.47131 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47095 * 300.00269 * 1 2 3 31 31 H 1.09003 * 109.46796 * 176.64323 * 4 2 1 32 32 H 1.09000 * 109.47027 * 56.64219 * 4 2 1 33 33 H 0.96994 * 119.99762 * 179.97438 * 8 7 5 34 34 H 1.08992 * 109.48727 * 296.77580 * 14 13 2 35 35 H 1.09001 * 109.48780 * 56.84268 * 14 13 2 36 36 H 1.09001 * 109.48910 * 298.43766 * 15 14 13 37 37 H 1.08994 * 109.50287 * 178.37903 * 15 14 13 38 38 H 1.08000 * 119.56957 * 180.02562 * 19 18 17 39 39 H 1.08000 * 120.33438 * 180.02562 * 20 19 18 40 40 H 1.08006 * 120.74393 * 180.02562 * 21 20 19 41 41 H 1.08992 * 109.49115 * 299.35715 * 26 16 15 42 42 H 1.09006 * 109.50612 * 179.29756 * 26 16 15 43 43 H 1.08999 * 109.49115 * 303.15606 * 27 13 2 44 44 H 1.08999 * 109.48708 * 63.19924 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6069 0.0356 2.4783 6 1 1.0843 0.9755 2.3775 7 6 1.8776 -0.4717 3.7314 8 7 2.5142 -1.6159 3.8541 9 14 1.3400 0.4661 5.2549 10 1 0.6470 1.7151 4.8485 11 1 0.4136 -0.3762 6.0534 12 1 2.5315 0.8046 6.0739 13 7 2.0196 -0.6924 -1.1995 14 6 3.4886 -0.6982 -1.2415 15 6 3.9583 -1.4955 -2.4606 16 7 3.4018 -0.8935 -3.6803 17 6 3.8651 -1.5488 -4.8153 18 7 3.6149 -2.8392 -4.9761 19 6 4.0369 -3.4986 -6.0382 20 6 4.7602 -2.8610 -7.0264 21 6 5.0439 -1.5082 -6.8959 22 6 4.5831 -0.8421 -5.7743 23 7 4.8554 0.6015 -5.5946 24 8 5.4048 1.2324 -6.4798 25 8 4.5302 1.1585 -4.5614 26 6 1.9328 -0.8877 -3.6383 27 6 1.4631 -0.0905 -2.4191 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.1284 -0.7736 1.2196 32 1 1.6284 -1.7300 1.2799 33 1 2.7049 -1.9727 4.7357 34 1 3.8543 0.3259 -1.3137 35 1 3.8765 -1.1601 -0.3335 36 1 3.6154 -2.5266 -2.3749 37 1 5.0469 -1.4771 -2.5101 38 1 3.8136 -4.5507 -6.1359 39 1 5.1011 -3.4088 -7.8924 40 1 5.6076 -0.9866 -7.6552 41 1 1.5671 -1.9119 -3.5660 42 1 1.5446 -0.4260 -4.5462 43 1 0.3744 -0.1092 -2.3698 44 1 1.8056 0.9408 -2.5046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411853956.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:18 Heat of formation + Delta-G solvation = 66.740442 kcal Electronic energy + Delta-G solvation = -27534.880763 eV Core-core repulsion = 23684.577393 eV Total energy + Delta-G solvation = -3850.303370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.32679 -40.94938 -39.00867 -36.63056 -36.10464 -33.52431 -33.21216 -31.84879 -30.93236 -30.19109 -27.12091 -26.85698 -26.02212 -23.96539 -23.47375 -22.85365 -22.43244 -20.01187 -19.46835 -19.08190 -18.73606 -17.85189 -17.53858 -16.97915 -16.49683 -15.73556 -15.40924 -14.75113 -14.55590 -14.44011 -14.38669 -14.01332 -13.89828 -13.59439 -13.54038 -12.70542 -12.43770 -11.96905 -11.59277 -11.52390 -11.34827 -11.23830 -11.21585 -11.09887 -11.02755 -10.86001 -10.84489 -10.75482 -10.58663 -10.31918 -10.25389 -9.92096 -9.75287 -9.18283 -9.03446 -8.80613 -8.30608 -7.67126 -5.97266 -3.98272 -0.48680 0.29348 1.15153 1.27652 2.85102 3.04792 3.33044 3.40820 3.44570 3.73823 3.93660 4.06847 4.27164 4.36224 4.50028 4.54627 4.89739 5.02850 5.16227 5.19866 5.33630 5.38962 5.47029 5.53103 5.64978 5.68728 5.80699 5.99820 6.11667 6.16786 6.25258 6.33799 6.38506 6.39312 6.68298 6.73597 6.81755 6.96345 7.03445 7.15051 7.55608 7.61581 7.67747 7.82819 7.90571 8.10744 8.47086 9.08230 9.64813 11.14184 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023172 B = 0.002882 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.061589 B = 9714.321212 C =10022.210530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.086 3.914 3 H 0.030 0.970 4 C 0.032 3.968 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.535 5.535 14 C 0.058 3.942 15 C 0.069 3.931 16 N -0.483 5.483 17 C 0.375 3.625 18 N -0.496 5.496 19 C 0.159 3.841 20 C -0.182 4.182 21 C -0.010 4.010 22 C -0.079 4.079 23 N 0.030 4.970 24 O -0.199 6.199 25 O -0.084 6.084 26 C 0.069 3.931 27 C 0.054 3.946 28 H 0.032 0.968 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.015 0.985 32 H 0.027 0.973 33 H 0.259 0.741 34 H 0.044 0.956 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.176 0.824 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.717 -3.832 -24.225 24.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.020 4.020 3 H 0.048 0.952 4 C -0.005 4.005 5 C -0.553 4.553 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.260 5.260 14 C -0.070 4.070 15 C -0.057 4.057 16 N -0.208 5.208 17 C 0.145 3.855 18 N -0.209 5.209 19 C 0.001 3.999 20 C -0.202 4.202 21 C -0.037 4.037 22 C -0.167 4.167 23 N 0.553 4.447 24 O -0.401 6.401 25 O -0.317 6.317 26 C -0.057 4.057 27 C -0.074 4.074 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.193 0.807 39 H 0.176 0.824 40 H 0.182 0.818 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.211 -5.070 -23.635 24.385 hybrid contribution 0.401 1.161 0.183 1.241 sum 3.612 -3.910 -23.452 24.048 Atomic orbital electron populations 1.21786 0.95362 1.01543 1.00190 1.21829 0.94914 0.95382 0.89911 0.95234 1.19164 0.95969 0.96189 0.89157 1.21234 1.36792 1.06481 0.90823 0.92610 1.24982 0.95350 0.94987 0.99030 1.69975 1.41212 1.18938 1.23210 0.86580 0.78340 0.80017 0.83326 1.19761 1.21104 1.21110 1.62291 1.06806 1.54876 1.02057 1.22167 0.88795 0.99292 0.96755 1.22273 0.98595 0.97880 0.86906 1.60719 1.10554 1.49497 1.00031 1.19962 0.88047 0.86771 0.90746 1.68412 1.21213 1.07676 1.23613 1.23216 0.88773 1.00813 0.87129 1.22249 1.01857 0.93824 1.02284 1.21555 0.93192 0.94570 0.94355 1.22072 1.10424 0.83537 1.00649 1.43205 0.98826 1.02207 1.00493 1.94521 1.43844 1.64836 1.36888 1.94677 1.51394 1.70064 1.15616 1.22231 0.83465 1.00978 0.98997 1.22163 1.00011 0.96271 0.88966 0.94902 0.92730 0.91423 0.96698 0.95476 0.93143 0.93761 0.88409 0.92014 0.90968 0.80742 0.82374 0.81788 0.92178 0.91320 0.89627 0.93871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.61 37.16 0.32 -2.16 16 2 C 0.09 1.79 2.11 -67.71 -0.14 1.64 16 3 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 4 C 0.03 0.82 4.35 -27.88 -0.12 0.70 16 5 C -0.51 -14.21 8.31 -34.44 -0.29 -14.50 16 6 H 0.06 1.51 7.11 -52.48 -0.37 1.13 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.53 -9.62 4.58 -226.49 -1.04 -10.66 16 14 C 0.06 1.00 5.33 -3.76 -0.02 0.98 16 15 C 0.07 1.03 5.42 -3.76 -0.02 1.01 16 16 N -0.48 -6.75 2.60 -173.04 -0.45 -7.20 16 17 C 0.37 4.61 5.32 -155.01 -0.83 3.78 16 18 N -0.50 -5.35 9.64 -12.44 -0.12 -5.47 16 19 C 0.16 1.05 11.17 -17.57 -0.20 0.86 16 20 C -0.18 -0.92 10.10 -39.43 -0.40 -1.32 16 21 C -0.01 -0.08 9.67 -39.32 -0.38 -0.46 16 22 C -0.08 -0.91 6.89 -79.60 -0.55 -1.46 16 23 N 0.03 0.42 4.45 34.13 0.15 0.57 16 24 O -0.20 -2.79 18.53 -29.46 -0.55 -3.33 16 25 O -0.08 -1.34 17.15 -29.46 -0.51 -1.84 16 26 C 0.07 0.94 5.45 -3.76 -0.02 0.92 16 27 C 0.05 0.83 5.21 -3.77 -0.02 0.81 16 28 H 0.03 0.52 6.27 -51.93 -0.33 0.20 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.36 6.93 -51.93 -0.36 1.00 16 31 H 0.01 0.40 6.18 -51.93 -0.32 0.08 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 1.85 6.09 -51.93 -0.32 1.54 16 36 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 37 H 0.07 1.01 8.13 -51.93 -0.42 0.58 16 38 H 0.18 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.16 0.22 8.06 -52.49 -0.42 -0.20 16 40 H 0.16 0.92 7.70 -52.48 -0.40 0.52 16 41 H 0.06 0.85 7.99 -51.93 -0.42 0.44 16 42 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 43 H 0.09 1.23 6.05 -51.93 -0.31 0.91 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -32.15 358.17 -10.33 -42.48 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -6.18 Total: -2.96 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -2.76 Total: -7.66 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.72 Total: -48.63 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -1.05 Total: -5.18 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.15 -10.33 -42.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411853956.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.217 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds