Wall clock time and date at job start Tue Mar 31 2020 13:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46778 * 2 1 4 4 O 1.42903 * 109.47163 * 120.00252 * 2 1 3 5 5 C 1.42891 * 114.00062 * 150.00094 * 4 2 1 6 6 H 1.09000 * 112.91058 * 18.74736 * 5 4 2 7 7 C 1.53786 * 113.61586 * 149.99622 * 5 4 2 8 8 C 1.53781 * 87.17350 * 140.02292 * 7 5 4 9 9 H 1.09003 * 113.61462 * 89.16045 * 8 7 5 10 10 N 1.46493 * 113.61552 * 219.97837 * 8 7 5 11 11 S 1.65598 * 120.00255 * 214.99901 * 10 8 7 12 12 O 1.42101 * 106.40684 * 178.53598 * 11 10 8 13 13 O 1.42102 * 106.40360 * 311.46453 * 11 10 8 14 14 N 1.65601 * 107.21751 * 64.99964 * 11 10 8 15 15 C 1.46500 * 120.00434 * 270.00194 * 14 11 10 16 16 C 1.46502 * 120.00150 * 90.00136 * 14 11 10 17 17 H 1.09001 * 109.46865 * 0.02562 * 16 14 11 18 18 C 1.52999 * 109.47394 * 120.00087 * 16 14 11 19 19 C 1.50703 * 109.47195 * 240.00194 * 16 14 11 20 20 H 1.08002 * 120.00023 * 0.02562 * 19 16 14 21 21 C 1.37874 * 120.00001 * 179.97438 * 19 16 14 22 22 N 1.31513 * 119.99940 * 0.02562 * 21 19 16 23 23 Si 1.86803 * 119.99953 * 179.97438 * 21 19 16 24 24 H 1.48495 * 109.46891 * 60.00202 * 23 21 19 25 25 H 1.48508 * 109.46970 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46991 * 299.99907 * 23 21 19 27 27 C 1.53781 * 87.08070 * 334.52830 * 8 7 5 28 28 H 1.08996 * 109.47165 * 299.99609 * 1 2 3 29 29 H 1.08994 * 109.47080 * 60.00048 * 1 2 3 30 30 H 1.09000 * 109.46656 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47044 * 239.99699 * 2 1 3 32 32 H 1.08994 * 109.47276 * 299.99832 * 3 2 1 33 33 H 1.09000 * 109.47355 * 60.00520 * 3 2 1 34 34 H 1.09005 * 109.46778 * 180.02562 * 3 2 1 35 35 H 1.09002 * 113.61357 * 25.43209 * 7 5 4 36 36 H 1.09002 * 113.61608 * 254.61371 * 7 5 4 37 37 H 0.96999 * 120.00349 * 34.99738 * 10 8 7 38 38 H 1.09001 * 109.47073 * 89.99547 * 15 14 11 39 39 H 1.08996 * 109.47846 * 210.00011 * 15 14 11 40 40 H 1.09006 * 109.46764 * 330.00344 * 15 14 11 41 41 H 1.08995 * 109.46893 * 180.02562 * 18 16 14 42 42 H 1.09000 * 109.46862 * 300.00209 * 18 16 14 43 43 H 1.09001 * 109.47185 * 60.00110 * 18 16 14 44 44 H 0.97008 * 119.99752 * 179.97438 * 22 21 19 45 45 H 1.09005 * 113.61471 * 139.98321 * 27 8 7 46 46 H 1.08996 * 113.61178 * 270.79663 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.2660 -1.3245 0.9886 6 1 3.8183 -0.9510 0.1263 7 6 4.1075 -1.4002 2.2735 8 6 4.5003 -2.8229 1.8417 9 1 5.3903 -2.8584 1.2135 10 7 4.5473 -3.7804 2.9494 11 16 5.6776 -4.9906 2.9504 12 8 5.4872 -5.7167 4.1570 13 8 5.6225 -5.5923 1.6642 14 7 7.1650 -4.2720 3.0670 15 6 7.8917 -3.8910 1.8533 16 6 7.7544 -4.0173 4.3838 17 1 7.0735 -4.3663 5.1602 18 6 9.0850 -4.7634 4.5001 19 6 7.9914 -2.5384 4.5505 20 1 7.7289 -1.8564 3.7553 21 6 8.5424 -2.0559 5.7187 22 7 8.8615 -2.8864 6.6872 23 14 8.8369 -0.2228 5.9251 24 1 7.5457 0.5017 5.8114 25 1 9.4341 0.0353 7.2600 26 1 9.7655 0.2514 4.8677 27 6 3.1828 -2.8615 1.0495 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 3.5135 -1.3694 3.1870 36 1 4.9444 -0.7019 2.2892 37 1 3.9164 -3.7056 3.6824 38 1 7.6235 -2.8720 1.5741 39 1 8.9642 -3.9464 2.0393 40 1 7.6278 -4.5710 1.0433 41 1 9.5232 -4.5742 5.4800 42 1 8.9136 -5.8330 4.3795 43 1 9.7661 -4.4148 3.7237 44 1 9.2496 -2.5469 7.5090 45 1 3.2729 -3.3427 0.0756 46 1 2.3363 -3.2317 1.6278 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416527111.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:21 Heat of formation + Delta-G solvation = -108.252071 kcal Electronic energy + Delta-G solvation = -26586.570859 eV Core-core repulsion = 22831.830444 eV Total energy + Delta-G solvation = -3754.740415 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.65167 -37.23990 -36.60975 -36.14454 -35.23998 -33.07897 -32.60430 -31.58201 -29.07970 -27.47736 -25.67509 -25.57691 -25.14078 -23.85563 -21.48573 -20.79988 -20.01929 -18.90336 -17.41728 -17.08220 -16.73854 -16.32463 -15.82633 -15.43150 -15.06159 -14.83921 -14.45159 -14.19195 -13.62058 -13.36380 -13.20358 -12.95831 -12.80381 -12.60667 -12.46201 -12.38917 -11.99507 -11.97514 -11.82679 -11.77058 -11.51837 -11.35314 -11.31223 -11.16551 -11.05254 -10.97852 -10.84824 -10.75624 -10.61846 -10.46396 -10.27239 -10.03228 -9.48655 -9.32231 -9.06034 -8.48301 -7.96934 -6.09225 -4.17637 1.26962 3.25122 3.31100 3.31242 3.39066 3.68326 4.14209 4.35299 4.50884 4.56058 4.71558 4.77301 4.86515 4.90899 4.97872 5.01168 5.18242 5.21329 5.34266 5.40284 5.55461 5.59895 5.64824 5.73644 5.81313 5.83960 5.93727 5.98062 6.03245 6.09012 6.13899 6.28573 6.49426 6.63015 6.83841 6.86730 7.09817 7.21958 7.26550 7.53070 7.63541 7.78416 8.04362 8.26164 8.85118 9.48674 10.95858 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012290 B = 0.004329 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.679912 B = 6466.549899 C = 8106.910239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.078 3.922 3 C -0.176 4.176 4 O -0.365 6.365 5 C 0.062 3.938 6 H 0.089 0.911 7 C -0.139 4.139 8 C 0.142 3.858 9 H 0.111 0.889 10 N -1.112 6.112 11 S 2.781 3.219 12 O -0.982 6.982 13 O -0.999 6.999 14 N -0.990 5.990 15 C 0.097 3.903 16 C 0.269 3.731 17 H 0.059 0.941 18 C -0.146 4.146 19 C -0.524 4.524 20 H 0.062 0.938 21 C 0.064 3.936 22 N -0.888 5.888 23 Si 0.896 3.104 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.278 1.278 27 C -0.167 4.167 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.414 0.586 38 H 0.041 0.959 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.093 0.907 42 H 0.012 0.988 43 H 0.033 0.967 44 H 0.264 0.736 45 H 0.073 0.927 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.066 5.360 -13.220 18.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.233 4.233 4 O -0.284 6.284 5 C 0.003 3.997 6 H 0.107 0.893 7 C -0.178 4.178 8 C 0.033 3.967 9 H 0.128 0.872 10 N -0.868 5.868 11 S 2.790 3.210 12 O -0.966 6.966 13 O -0.982 6.982 14 N -0.833 5.833 15 C -0.049 4.049 16 C 0.166 3.834 17 H 0.076 0.924 18 C -0.206 4.206 19 C -0.563 4.563 20 H 0.080 0.920 21 C -0.138 4.138 22 N -0.526 5.526 23 Si 0.724 3.276 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.207 4.207 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.247 0.753 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.032 0.968 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.092 0.908 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.126 4.372 -13.059 17.705 hybrid contribution 0.235 1.629 0.326 1.677 sum -10.891 6.001 -12.733 17.798 Atomic orbital electron populations 1.21859 0.93840 1.02658 1.02338 1.22124 0.94920 0.92453 0.88453 1.22331 1.01704 0.96889 1.02407 1.87996 1.36086 1.69301 1.35043 1.23620 0.85152 0.92218 0.98714 0.89347 1.23618 0.99304 0.96648 0.98266 1.21723 0.97915 0.88962 0.88106 0.87166 1.55971 1.51086 1.48290 1.31451 1.01836 0.72886 0.73524 0.72799 1.93595 1.85783 1.69975 1.47263 1.93533 1.86873 1.75033 1.42788 1.57670 1.33738 1.77940 1.13908 1.21295 0.99162 0.98706 0.85772 1.18716 0.92252 0.95506 0.76950 0.92364 1.22071 0.99296 0.95682 1.03528 1.21332 1.41928 0.91749 1.01314 0.92009 1.24921 0.95317 0.97861 0.95743 1.69871 1.42524 1.34196 1.06019 0.86604 0.78475 0.85283 0.77253 1.20264 1.21281 1.20318 1.24081 0.99156 0.96074 1.01383 0.91848 0.91488 0.92009 0.92236 0.91911 0.91785 0.92354 0.88441 0.90060 0.75286 0.94000 0.90545 0.92037 0.88857 0.96841 0.94831 0.92602 0.90784 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.56 37.16 0.36 -0.82 16 2 C 0.08 0.71 3.22 -26.73 -0.09 0.63 16 3 C -0.18 -1.45 9.53 37.16 0.35 -1.09 16 4 O -0.37 -4.29 10.00 -35.23 -0.35 -4.64 16 5 C 0.06 0.68 4.14 -25.77 -0.11 0.58 16 6 H 0.09 0.83 7.77 -51.93 -0.40 0.43 16 7 C -0.14 -1.77 7.69 -25.92 -0.20 -1.97 16 8 C 0.14 1.92 4.38 -67.12 -0.29 1.63 16 9 H 0.11 1.44 7.17 -51.93 -0.37 1.06 16 10 N -1.11 -17.51 5.84 -4.20 -0.02 -17.53 16 11 S 2.78 53.85 6.08 -107.50 -0.65 53.19 16 12 O -0.98 -22.40 16.70 -57.17 -0.95 -23.35 16 13 O -1.00 -20.06 16.50 -57.17 -0.94 -21.01 16 14 N -0.99 -20.07 3.12 -115.85 -0.36 -20.44 16 15 C 0.10 1.67 9.48 59.85 0.57 2.23 16 16 C 0.27 6.49 2.62 -69.08 -0.18 6.31 16 17 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 18 C -0.15 -3.45 8.95 37.16 0.33 -3.12 16 19 C -0.52 -13.25 8.37 -34.44 -0.29 -13.53 16 20 H 0.06 1.51 7.65 -52.49 -0.40 1.11 16 21 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 22 N -0.89 -24.32 11.32 55.43 0.63 -23.69 16 23 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 C -0.17 -1.98 7.72 -25.78 -0.20 -2.18 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.49 7.73 -51.93 -0.40 0.09 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.41 5.96 8.94 -34.46 -0.31 5.65 16 38 H 0.04 0.64 7.71 -51.93 -0.40 0.24 16 39 H 0.08 1.32 6.43 -51.93 -0.33 0.99 16 40 H 0.06 0.96 7.02 -51.93 -0.36 0.59 16 41 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 42 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.03 0.73 6.66 -51.93 -0.35 0.39 16 44 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 379.32 15.07 5.72 5.72 Total: -1.00 -31.17 379.32 -9.60 -40.76 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.79 Total: 5.50 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 0.16 Total: -9.75 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: 0.24 Total: -61.66 kcal Atomic # 8 Polarization: -46.75 SS G_CDS: -2.25 Total: -49.00 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 53.85 SS G_CDS: -0.65 Total: 53.19 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.17 -9.60 -40.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416527111.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.489 kcal (2) G-P(sol) polarization free energy of solvation -31.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds