Wall clock time and date at job start Tue Mar 31 2020 13:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47145 * 2 1 4 4 O 1.42905 * 109.47119 * 119.99762 * 2 1 3 5 5 C 1.42897 * 114.00036 * 150.00039 * 4 2 1 6 6 H 1.09008 * 112.90988 * 341.25220 * 5 4 2 7 7 C 1.53782 * 113.61793 * 112.50018 * 5 4 2 8 8 C 1.53785 * 87.08180 * 139.97919 * 7 5 4 9 9 H 1.08998 * 113.68412 * 89.13191 * 8 7 5 10 10 N 1.46493 * 113.61658 * 220.02106 * 8 7 5 11 11 S 1.65599 * 120.00048 * 242.50348 * 10 8 7 12 12 O 1.42102 * 106.40395 * 311.45874 * 11 10 8 13 13 O 1.42097 * 106.40322 * 178.53954 * 11 10 8 14 14 N 1.65600 * 107.22069 * 64.99840 * 11 10 8 15 15 C 1.46499 * 120.00084 * 90.00328 * 14 11 10 16 16 C 1.46499 * 119.99691 * 270.00182 * 14 11 10 17 17 H 1.08996 * 109.47508 * 359.97438 * 16 14 11 18 18 C 1.53006 * 109.46868 * 239.99718 * 16 14 11 19 19 C 1.50696 * 109.46993 * 120.00215 * 16 14 11 20 20 H 1.07996 * 120.00258 * 359.97438 * 19 16 14 21 21 C 1.37880 * 120.00074 * 179.97438 * 19 16 14 22 22 N 1.31521 * 119.99949 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 120.00158 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.46899 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47127 * 119.99920 * 23 21 19 26 26 H 1.48495 * 109.46810 * 239.99849 * 23 21 19 27 27 C 1.53778 * 113.61684 * 210.00141 * 5 4 2 28 28 H 1.09000 * 109.47323 * 299.99952 * 1 2 3 29 29 H 1.08995 * 109.47250 * 60.00014 * 1 2 3 30 30 H 1.09007 * 109.46868 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47117 * 239.99605 * 2 1 3 32 32 H 1.09002 * 109.46697 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.46515 * 299.99571 * 3 2 1 34 34 H 1.08991 * 109.47215 * 59.99798 * 3 2 1 35 35 H 1.09004 * 113.61025 * 25.43574 * 7 5 4 36 36 H 1.08996 * 113.61782 * 254.53601 * 7 5 4 37 37 H 0.97004 * 119.99978 * 62.49657 * 10 8 7 38 38 H 1.09002 * 109.47391 * 89.99859 * 15 14 11 39 39 H 1.09001 * 109.46813 * 329.99915 * 15 14 11 40 40 H 1.09004 * 109.47041 * 210.00042 * 15 14 11 41 41 H 1.09002 * 109.46830 * 180.02562 * 18 16 14 42 42 H 1.08993 * 109.47519 * 299.99954 * 18 16 14 43 43 H 1.09007 * 109.47040 * 60.00609 * 18 16 14 44 44 H 0.96995 * 120.00084 * 179.97438 * 22 21 19 45 45 H 1.08997 * 113.61819 * 105.47038 * 27 5 4 46 46 H 1.09004 * 113.61363 * 334.56703 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2659 -1.3244 0.9887 6 1 3.5141 -1.4889 -0.0599 7 6 4.4078 -0.6891 1.7995 8 6 4.8960 -2.1194 2.0842 9 1 5.5900 -2.5022 1.3359 10 7 5.3733 -2.3146 3.4554 11 16 6.9525 -2.7296 3.7312 12 8 7.2421 -3.8108 2.8558 13 8 7.1061 -2.8090 5.1416 14 7 7.8882 -1.4586 3.2298 15 6 8.2331 -0.3879 4.1683 16 6 8.3710 -1.4050 1.8477 17 1 8.0163 -2.2809 1.3046 18 6 9.9010 -1.3872 1.8424 19 6 7.8519 -0.1564 1.1824 20 1 7.2248 0.5284 1.7337 21 6 8.1777 0.1116 -0.1303 22 7 8.9419 -0.7221 -0.8016 23 14 7.5337 1.6589 -0.9552 24 1 6.7018 2.4239 0.0082 25 1 8.6772 2.4970 -1.3970 26 1 6.7096 1.2856 -2.1327 27 6 3.4432 -2.5743 1.8669 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 4.0687 -0.1584 2.6892 36 1 5.0999 -0.1037 1.1943 37 1 4.7643 -2.2006 4.2018 38 1 9.1647 -0.6364 4.6768 39 1 7.4359 -0.2785 4.9036 40 1 8.3553 0.5480 3.6229 41 1 10.2602 -1.3469 0.8140 42 1 10.2562 -0.5116 2.3855 43 1 10.2765 -2.2904 2.3236 44 1 9.1708 -0.5337 -1.7251 45 1 3.3568 -3.5109 1.3161 46 1 2.8404 -2.5590 2.7750 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416527112.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:25 Heat of formation + Delta-G solvation = -109.516583 kcal Electronic energy + Delta-G solvation = -27295.023133 eV Core-core repulsion = 23540.227885 eV Total energy + Delta-G solvation = -3754.795248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.44521 -37.05658 -36.58732 -36.12891 -35.22262 -32.94336 -32.63377 -31.45157 -29.09008 -27.29172 -25.60494 -25.40772 -25.11168 -23.67602 -21.35977 -20.76605 -19.84972 -18.87589 -17.29391 -16.88581 -16.68795 -16.42581 -15.71318 -15.23526 -14.98531 -14.60726 -14.34585 -14.21551 -13.52355 -13.27988 -12.97792 -12.79213 -12.69437 -12.52308 -12.29154 -12.20263 -12.00723 -11.80158 -11.75497 -11.71770 -11.47755 -11.40103 -11.23227 -11.00825 -10.99873 -10.91527 -10.88625 -10.56002 -10.47660 -10.40278 -10.22346 -10.10421 -9.32440 -9.23298 -8.98575 -8.53695 -7.96244 -6.14651 -4.22521 1.28144 3.16658 3.27060 3.28152 3.48101 3.81370 4.18510 4.29099 4.75016 4.78412 4.88188 5.01976 5.04467 5.13505 5.15901 5.17259 5.23188 5.49739 5.52901 5.57745 5.68946 5.72557 5.79119 5.88509 5.94369 6.02042 6.07652 6.19276 6.21782 6.28465 6.34930 6.54092 6.64274 6.69732 6.87521 6.88368 7.10755 7.27832 7.43486 7.52885 7.60327 7.74527 8.01995 8.22575 8.81506 9.43346 10.90254 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010419 B = 0.006118 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.688503 B = 4575.449722 C = 6552.133218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.079 3.921 3 C -0.176 4.176 4 O -0.368 6.368 5 C 0.061 3.939 6 H 0.090 0.910 7 C -0.164 4.164 8 C 0.142 3.858 9 H 0.123 0.877 10 N -1.115 6.115 11 S 2.781 3.219 12 O -0.983 6.983 13 O -1.001 7.001 14 N -0.990 5.990 15 C 0.109 3.891 16 C 0.267 3.733 17 H 0.058 0.942 18 C -0.145 4.145 19 C -0.521 4.521 20 H 0.066 0.934 21 C 0.066 3.934 22 N -0.885 5.885 23 Si 0.887 3.113 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.284 1.284 27 C -0.143 4.143 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.408 0.592 38 H 0.041 0.959 39 H 0.049 0.951 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.032 0.968 43 H 0.012 0.988 44 H 0.263 0.737 45 H 0.075 0.925 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.996 1.650 2.308 12.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 C -0.234 4.234 4 O -0.287 6.287 5 C 0.003 3.997 6 H 0.108 0.892 7 C -0.204 4.204 8 C 0.034 3.966 9 H 0.141 0.859 10 N -0.872 5.872 11 S 2.789 3.211 12 O -0.966 6.966 13 O -0.986 6.986 14 N -0.832 5.832 15 C -0.037 4.037 16 C 0.164 3.836 17 H 0.075 0.925 18 C -0.205 4.205 19 C -0.560 4.560 20 H 0.084 0.916 21 C -0.137 4.137 22 N -0.523 5.523 23 Si 0.715 3.285 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.182 4.182 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.240 0.760 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.110 0.890 42 H 0.051 0.949 43 H 0.031 0.969 44 H 0.073 0.927 45 H 0.093 0.907 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.560 0.754 2.530 11.858 hybrid contribution -0.506 1.443 -0.634 1.655 sum -12.066 2.197 1.896 12.410 Atomic orbital electron populations 1.21865 0.94092 1.02413 1.02228 1.22144 0.94540 0.92802 0.88365 1.22333 1.02285 0.96701 1.02083 1.87931 1.36388 1.69251 1.35164 1.23620 0.83704 0.93623 0.98757 0.89186 1.24020 0.97248 0.97890 1.01206 1.21851 0.95095 0.96526 0.83091 0.85906 1.55969 1.30204 1.88074 1.12911 1.01849 0.72789 0.74033 0.72382 1.93581 1.83787 1.51699 1.67550 1.93543 1.85946 1.87373 1.31702 1.57678 1.65198 1.39047 1.21320 1.21150 0.98913 0.92261 0.91405 1.18737 0.91956 0.98323 0.74622 0.92483 1.22054 0.98008 0.97090 1.03330 1.21413 1.31164 1.07000 0.96429 0.91606 1.24899 0.95041 0.96476 0.97264 1.69889 1.36045 1.36037 1.10375 0.86614 0.78876 0.83433 0.79552 1.19615 1.21038 1.20982 1.23653 0.96485 0.97406 1.00680 0.91989 0.91554 0.92171 0.92196 0.91895 0.92076 0.91984 0.89419 0.88811 0.75957 0.94023 0.93244 0.90259 0.88951 0.94896 0.96939 0.92708 0.90655 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.56 37.16 0.36 -1.04 16 2 C 0.08 0.91 3.33 -26.73 -0.09 0.82 16 3 C -0.18 -2.02 9.53 37.16 0.35 -1.66 16 4 O -0.37 -5.00 10.00 -35.23 -0.35 -5.35 16 5 C 0.06 0.84 4.26 -25.92 -0.11 0.73 16 6 H 0.09 1.19 7.46 -51.92 -0.39 0.80 16 7 C -0.16 -2.50 7.71 -25.92 -0.20 -2.70 16 8 C 0.14 2.23 4.45 -67.12 -0.30 1.94 16 9 H 0.12 2.19 7.77 -51.93 -0.40 1.78 16 10 N -1.12 -17.43 5.84 -4.20 -0.02 -17.46 16 11 S 2.78 53.66 6.06 -107.50 -0.65 53.01 16 12 O -0.98 -22.07 16.22 -57.17 -0.93 -23.00 16 13 O -1.00 -20.51 17.21 -57.17 -0.98 -21.49 16 14 N -0.99 -19.83 3.12 -115.85 -0.36 -20.19 16 15 C 0.11 1.91 9.28 59.85 0.56 2.47 16 16 C 0.27 6.17 2.62 -69.08 -0.18 5.98 16 17 H 0.06 1.46 6.91 -51.93 -0.36 1.10 16 18 C -0.15 -3.37 8.97 37.16 0.33 -3.03 16 19 C -0.52 -12.31 7.43 -34.44 -0.26 -12.56 16 20 H 0.07 1.52 6.99 -52.49 -0.37 1.15 16 21 C 0.07 1.63 5.30 -17.82 -0.09 1.53 16 22 N -0.89 -23.13 11.32 55.43 0.63 -22.50 16 23 Si 0.89 19.27 29.54 -169.99 -5.02 14.24 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 27 C -0.14 -1.88 7.70 -25.92 -0.20 -2.08 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.06 0.66 7.42 -51.93 -0.39 0.27 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.09 1.63 7.22 -51.93 -0.37 1.25 16 37 H 0.41 5.32 8.94 -34.47 -0.31 5.02 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.76 7.79 -51.93 -0.40 0.36 16 40 H 0.08 1.40 7.02 -51.93 -0.36 1.04 16 41 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 42 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 43 H 0.01 0.26 8.14 -51.92 -0.42 -0.16 16 44 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -29.24 379.93 -9.65 -38.89 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -7.85 Total: 7.73 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 0.17 Total: -9.61 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.24 Total: -60.15 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -2.26 Total: -49.84 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.24 kcal Atomic # 16 Polarization: 53.66 SS G_CDS: -0.65 Total: 53.01 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.24 -9.65 -38.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416527112.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.622 kcal (2) G-P(sol) polarization free energy of solvation -29.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds