Wall clock time and date at job start Tue Mar 31 2020 13:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46494 * 120.00080 * 275.00347 * 3 2 1 5 5 C 1.50697 * 109.47607 * 84.99862 * 4 3 2 6 6 H 1.08003 * 119.99367 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00325 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99491 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00078 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46985 * 60.00320 * 9 7 5 11 11 H 1.48501 * 109.46923 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47269 * 299.99702 * 9 7 5 13 13 S 1.65596 * 119.99655 * 94.99926 * 3 2 1 14 14 O 1.42103 * 106.40201 * 203.53703 * 13 3 2 15 15 O 1.42095 * 106.40562 * 336.46073 * 13 3 2 16 16 N 1.65601 * 107.21751 * 90.00120 * 13 3 2 17 17 C 1.46500 * 119.99962 * 64.99870 * 16 13 3 18 18 H 1.08998 * 112.84899 * 344.66409 * 17 16 13 19 19 C 1.53777 * 113.61435 * 115.86556 * 17 16 13 20 20 C 1.53949 * 87.02098 * 139.94955 * 19 17 16 21 21 H 1.09001 * 113.54054 * 89.18549 * 20 19 17 22 22 O 1.42898 * 113.74469 * 220.05348 * 20 19 17 23 23 C 1.42905 * 114.00137 * 247.59894 * 22 20 19 24 24 C 1.52999 * 109.47120 * 149.99946 * 23 22 20 25 25 C 1.53005 * 109.46844 * 270.00028 * 23 22 20 26 26 C 1.53781 * 87.11320 * 334.63459 * 20 19 17 27 27 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 29 29 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 30 30 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 31 31 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 32 32 H 1.08998 * 109.46996 * 205.00499 * 4 3 2 33 33 H 1.09004 * 109.47165 * 324.99422 * 4 3 2 34 34 H 0.97007 * 119.99732 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00110 * 244.99789 * 16 13 3 36 36 H 1.09005 * 113.61377 * 254.52858 * 19 17 16 37 37 H 1.09000 * 113.62126 * 25.42948 * 19 17 16 38 38 H 1.08994 * 109.47025 * 29.99624 * 23 22 20 39 39 H 1.09005 * 109.47225 * 60.00333 * 24 23 22 40 40 H 1.08997 * 109.46998 * 179.97438 * 24 23 22 41 41 H 1.08993 * 109.47278 * 299.99649 * 24 23 22 42 42 H 1.08995 * 109.47443 * 59.99837 * 25 23 22 43 43 H 1.09007 * 109.46821 * 180.02562 * 25 23 22 44 44 H 1.09004 * 109.46907 * 299.99511 * 25 23 22 45 45 H 1.08991 * 113.61335 * 270.81643 * 26 20 19 46 46 H 1.09004 * 113.69031 * 139.91512 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2638 5 6 0.8360 2.7289 -1.6356 6 1 -0.0225 2.5949 -0.9942 7 6 0.7224 3.4673 -2.7943 8 7 1.7681 3.6309 -3.5750 9 14 -0.9167 4.2355 -3.2554 10 1 -1.3403 5.1764 -2.1875 11 1 -0.7748 4.9730 -4.5365 12 1 -1.9379 3.1683 -3.4086 13 16 2.4122 2.1201 1.4287 14 8 2.3058 3.5186 1.1999 15 8 1.6868 1.4415 2.4448 16 7 4.0144 1.8136 1.7137 17 6 5.0351 2.3523 0.8114 18 1 4.6218 2.7011 -0.1350 19 6 5.9780 3.3650 1.4825 20 6 7.1194 2.7098 0.6838 21 1 7.2770 3.1575 -0.2974 22 8 8.3308 2.5622 1.4273 23 6 9.4037 3.3819 0.9592 24 6 10.3193 3.7417 2.1310 25 6 10.2044 2.6193 -0.0983 26 6 6.2591 1.4357 0.6487 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.9080 2.8918 -1.1512 33 1 2.4690 1.4183 -2.0480 34 1 1.6882 4.1507 -4.3901 35 1 4.2771 1.2773 2.4781 36 1 5.7822 4.3989 1.1980 37 1 6.0666 3.2312 2.5606 38 1 8.9993 4.2942 0.5207 39 1 10.7239 2.8294 2.5694 40 1 11.1379 4.3666 1.7738 41 1 9.7490 4.2850 2.8842 42 1 9.5521 2.3629 -0.9331 43 1 11.0230 3.2444 -0.4550 44 1 10.6089 1.7070 0.3403 45 1 6.4247 0.7735 1.4983 46 1 6.2892 0.9132 -0.3075 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416528989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:02 Heat of formation + Delta-G solvation = -112.438704 kcal Electronic energy + Delta-G solvation = -26399.944424 eV Core-core repulsion = 22645.022463 eV Total energy + Delta-G solvation = -3754.921961 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.64400 -37.22503 -36.54083 -36.03853 -35.10776 -33.09619 -32.59743 -31.59788 -29.81575 -27.45430 -26.74469 -25.68512 -23.88469 -22.77533 -21.86088 -21.45658 -20.06002 -18.98144 -17.37186 -17.08418 -16.72528 -16.30633 -15.84113 -15.42933 -15.05221 -14.79194 -14.39327 -14.20554 -13.78693 -13.37239 -13.11456 -12.97846 -12.86390 -12.59086 -12.45922 -12.39146 -12.21598 -11.97857 -11.89029 -11.78601 -11.48626 -11.36371 -11.26279 -11.20922 -11.03262 -10.98268 -10.96740 -10.75262 -10.61975 -10.43910 -10.36987 -9.90593 -9.62522 -9.47864 -9.18018 -8.43435 -8.09252 -6.07147 -4.09693 1.25488 3.33417 3.36955 3.40874 3.43061 3.71317 4.15653 4.44394 4.53001 4.56576 4.74482 4.81816 4.88929 4.94350 5.01971 5.08159 5.23078 5.30604 5.36618 5.40530 5.49043 5.57202 5.62664 5.71814 5.78619 5.79611 5.87326 5.94086 5.99255 6.00148 6.03309 6.08541 6.17863 6.41446 6.47893 6.70960 6.99607 7.13087 7.23285 7.25893 7.41216 7.63962 7.91210 8.20732 8.92028 9.55041 11.01527 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.003744 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.769460 B = 7476.653022 C = 8562.127112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.137 3.863 3 N -0.994 5.994 4 C 0.257 3.743 5 C -0.525 4.525 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.276 1.276 13 S 2.777 3.223 14 O -0.963 6.963 15 O -0.998 6.998 16 N -1.120 6.120 17 C 0.135 3.865 18 H 0.121 0.879 19 C -0.168 4.168 20 C 0.063 3.937 21 H 0.092 0.908 22 O -0.367 6.367 23 C 0.077 3.923 24 C -0.149 4.149 25 C -0.175 4.175 26 C -0.140 4.140 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.263 0.737 35 H 0.409 0.591 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.094 0.906 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.602 -4.657 7.392 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.010 3.990 3 N -0.836 5.836 4 C 0.135 3.865 5 C -0.564 4.564 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.202 1.202 13 S 2.785 3.215 14 O -0.946 6.946 15 O -0.982 6.982 16 N -0.876 5.876 17 C 0.026 3.974 18 H 0.139 0.861 19 C -0.207 4.207 20 C 0.004 3.996 21 H 0.110 0.890 22 O -0.286 6.286 23 C 0.020 3.980 24 C -0.206 4.206 25 C -0.233 4.233 26 C -0.180 4.180 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.241 0.759 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.112 0.888 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 14.034 -4.063 7.761 16.544 hybrid contribution -0.523 0.192 -0.541 0.777 sum 13.511 -3.871 7.220 15.801 Atomic orbital electron populations 1.22261 0.96431 1.00825 1.03652 1.20933 0.94776 0.82206 1.01064 1.57770 1.78514 1.23032 1.24289 1.19068 0.97490 0.90788 0.79119 1.21488 0.96367 1.31844 1.06718 0.91941 1.24913 0.96832 0.95996 0.96222 1.69899 1.29303 1.40727 1.13699 0.86612 0.83925 0.79565 0.77700 1.20035 1.21238 1.20201 1.02099 0.72610 0.73989 0.72791 1.93632 1.85260 1.30433 1.85285 1.93543 1.70177 1.76303 1.58185 1.56203 1.25564 1.67973 1.37845 1.21932 0.87214 0.94506 0.93705 0.86104 1.24042 0.95140 1.00105 1.01452 1.23582 0.83279 0.97654 0.95071 0.89025 1.87963 1.19866 1.64567 1.56247 1.22137 0.88010 0.93115 0.94774 1.21856 0.98869 1.01889 0.98030 1.22327 1.00501 1.01294 0.99152 1.23619 0.93898 0.96979 1.03473 0.93112 0.92854 0.90296 0.91121 0.92163 0.94717 0.94734 0.92711 0.75878 0.90356 0.88883 0.92026 0.91954 0.91454 0.92000 0.92276 0.91858 0.91927 0.88787 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 9.83 37.16 0.37 -2.69 16 2 C 0.14 2.35 6.09 -4.04 -0.02 2.33 16 3 N -0.99 -19.98 2.86 -115.67 -0.33 -20.31 16 4 C 0.26 6.14 5.03 -5.20 -0.03 6.12 16 5 C -0.52 -14.25 8.41 -34.44 -0.29 -14.54 16 6 H 0.06 1.70 6.89 -52.48 -0.36 1.34 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -25.41 13.29 55.43 0.74 -24.67 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 S 2.78 54.53 5.99 -107.50 -0.64 53.89 16 14 O -0.96 -22.88 16.87 -57.17 -0.96 -23.85 16 15 O -1.00 -20.75 17.11 -57.17 -0.98 -21.72 16 16 N -1.12 -16.53 5.85 -4.20 -0.02 -16.55 16 17 C 0.13 1.90 4.36 -67.12 -0.29 1.60 16 18 H 0.12 1.91 6.49 -51.93 -0.34 1.58 16 19 C -0.17 -2.16 7.73 -25.83 -0.20 -2.36 16 20 C 0.06 0.72 4.13 -25.83 -0.11 0.62 16 21 H 0.09 0.98 7.77 -51.93 -0.40 0.57 16 22 O -0.37 -4.27 10.00 -35.23 -0.35 -4.62 16 23 C 0.08 0.73 3.22 -26.73 -0.09 0.64 16 24 C -0.15 -1.19 9.56 37.16 0.36 -0.83 16 25 C -0.18 -1.45 9.53 37.16 0.35 -1.09 16 26 C -0.14 -1.62 7.69 -25.92 -0.20 -1.82 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.08 1.56 6.59 -51.93 -0.34 1.22 16 30 H 0.07 1.12 8.00 -51.93 -0.42 0.70 16 31 H 0.06 0.90 7.61 -51.93 -0.40 0.51 16 32 H 0.04 0.87 6.15 -51.93 -0.32 0.55 16 33 H 0.03 0.84 8.00 -51.93 -0.42 0.42 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.41 4.97 8.93 -34.47 -0.31 4.66 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.06 0.56 7.72 -51.93 -0.40 0.16 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 384.05 15.07 5.79 5.79 Total: -1.00 -32.63 384.05 -9.95 -42.57 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.91 Total: 3.34 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -0.25 Total: -10.39 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: 0.38 Total: -61.53 kcal Atomic # 8 Polarization: -47.90 SS G_CDS: -2.30 Total: -50.20 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 54.53 SS G_CDS: -0.64 Total: 53.89 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.63 -9.95 -42.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416528989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.865 kcal (2) G-P(sol) polarization free energy of solvation -32.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds