Wall clock time and date at job start Tue Mar 31 2020 12:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42890 * 113.99820 * 2 1 4 4 C 1.53001 * 112.84760 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47158 * 173.80950 * 4 3 2 6 6 C 1.53002 * 109.46919 * 293.80104 * 4 3 2 7 7 N 1.46497 * 109.47332 * 53.80850 * 4 3 2 8 8 S 1.65595 * 120.00400 * 145.00258 * 7 4 3 9 9 O 1.42101 * 106.39876 * 311.45775 * 8 7 4 10 10 O 1.42096 * 106.40242 * 178.53750 * 8 7 4 11 11 N 1.65600 * 107.21978 * 64.99328 * 8 7 4 12 12 C 1.46502 * 120.00173 * 270.00411 * 11 8 7 13 13 C 1.46506 * 119.99915 * 90.00190 * 11 8 7 14 14 H 1.09005 * 109.46943 * 0.02562 * 13 11 8 15 15 C 1.53000 * 109.47074 * 240.00242 * 13 11 8 16 16 C 1.50696 * 109.46871 * 119.99703 * 13 11 8 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 13 11 18 18 C 1.37885 * 119.99717 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 13 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.53779 * 113.69447 * 311.26971 * 3 2 1 25 25 C 1.53784 * 87.08294 * 89.12934 * 24 3 2 26 26 C 1.53779 * 87.08011 * 25.43242 * 25 24 3 27 27 H 1.08998 * 109.47262 * 60.00105 * 1 2 3 28 28 H 1.08999 * 109.46857 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46649 * 299.99611 * 1 2 3 30 30 H 1.09001 * 109.46907 * 179.97438 * 6 4 3 31 31 H 1.08993 * 109.47370 * 299.99969 * 6 4 3 32 32 H 1.08996 * 109.46551 * 60.00736 * 6 4 3 33 33 H 0.96999 * 119.99336 * 324.99444 * 7 4 3 34 34 H 1.09005 * 109.46997 * 269.99464 * 12 11 8 35 35 H 1.08997 * 109.47497 * 29.99813 * 12 11 8 36 36 H 1.09004 * 109.47127 * 150.00311 * 12 11 8 37 37 H 1.08997 * 109.46749 * 299.99711 * 15 13 11 38 38 H 1.08996 * 109.47024 * 59.99854 * 15 13 11 39 39 H 1.08998 * 109.46637 * 179.97438 * 15 13 11 40 40 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 41 41 H 1.09002 * 113.61964 * 203.67604 * 24 3 2 42 42 H 1.09003 * 113.61504 * 334.57677 * 24 3 2 43 43 H 1.09001 * 113.61152 * 270.89128 * 25 24 3 44 44 H 1.08993 * 113.61744 * 139.98167 * 25 24 3 45 45 H 1.09000 * 113.61559 * 220.01993 * 26 25 24 46 46 H 1.09002 * 113.61407 * 89.12128 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5399 1.2747 -0.0006 5 1 3.9237 2.2889 -0.1114 6 6 4.0386 0.6821 1.3189 7 7 4.0114 0.4497 -1.1156 8 16 5.4031 0.8560 -1.9158 9 8 5.3015 2.2404 -2.2198 10 8 5.6038 -0.1443 -2.9050 11 7 6.6507 0.7044 -0.8375 12 6 7.0490 1.8477 -0.0127 13 6 7.3560 -0.5732 -0.7082 14 1 6.9229 -1.2987 -1.3969 15 6 7.2210 -1.0875 0.7264 16 6 8.8137 -0.3776 -1.0368 17 1 9.1783 0.6005 -1.3137 18 6 9.6819 -1.4475 -0.9838 19 7 10.9541 -1.2768 -1.2701 20 14 9.0509 -3.1394 -0.5055 21 1 9.1488 -3.3062 0.9668 22 1 7.6333 -3.2762 -0.9261 23 1 9.8693 -4.1809 -1.1771 24 6 1.4130 2.2477 -1.0584 25 6 0.3746 2.6522 0.0014 26 6 1.4130 2.2456 1.0603 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 5.1284 0.6598 1.3183 31 1 3.6879 1.2960 2.1484 32 1 3.6550 -0.3320 1.4297 33 1 3.5083 -0.3347 -1.3851 34 1 7.8122 2.4245 -0.5354 35 1 6.1813 2.4799 0.1756 36 1 7.4503 1.4896 0.9354 37 1 7.6544 -0.3619 1.4147 38 1 6.1667 -1.2288 0.9640 39 1 7.7454 -2.0382 0.8224 40 1 11.5649 -2.0294 -1.2325 41 1 2.0809 3.0593 -1.3472 42 1 0.9835 1.7269 -1.9142 43 1 -0.5168 2.0250 0.0008 44 1 0.1440 3.7174 0.0024 45 1 0.9834 1.7231 1.9150 46 1 2.0809 3.0566 1.3508 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416616608.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:11 Heat of formation + Delta-G solvation = -78.259892 kcal Electronic energy + Delta-G solvation = -27747.653763 eV Core-core repulsion = 23994.213907 eV Total energy + Delta-G solvation = -3753.439856 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.88027 -36.77209 -36.50796 -35.67888 -35.28093 -34.94651 -32.47444 -30.04560 -29.91696 -27.75946 -25.99232 -25.77671 -25.02160 -24.57089 -21.67543 -20.91927 -20.24015 -18.78023 -17.45741 -17.26933 -16.88214 -16.40254 -16.00625 -15.51159 -15.37081 -15.12617 -14.48114 -13.86059 -13.79328 -13.70109 -13.60605 -13.36892 -12.94479 -12.67333 -12.48015 -12.34592 -12.29378 -12.21986 -11.93398 -11.91264 -11.69879 -11.54189 -11.47253 -11.39997 -11.15756 -11.02755 -11.01222 -10.73393 -10.44341 -10.33135 -10.11841 -9.65609 -9.59323 -9.37481 -9.25737 -8.60807 -8.08652 -6.10031 -4.10200 1.13559 3.24341 3.29946 3.37836 3.38696 3.50986 4.02500 4.20105 4.29757 4.37428 4.40573 4.55021 4.90847 4.93232 5.05863 5.08108 5.19921 5.24430 5.27151 5.35335 5.41237 5.45250 5.47823 5.61508 5.63056 5.66576 5.75159 5.86023 5.98215 6.01725 6.14853 6.21397 6.24259 6.28879 6.44062 6.52782 6.58510 6.83731 7.00164 7.17507 7.33176 7.47197 7.66674 8.49879 8.94521 9.50187 11.03012 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.004320 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.128741 B = 6479.660870 C = 6820.210620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.352 6.352 3 C 0.095 3.905 4 C 0.178 3.822 5 H 0.099 0.901 6 C -0.177 4.177 7 N -1.123 6.123 8 S 2.780 3.220 9 O -0.992 6.992 10 O -0.975 6.975 11 N -0.984 5.984 12 C 0.107 3.893 13 C 0.241 3.759 14 H 0.057 0.943 15 C -0.164 4.164 16 C -0.521 4.521 17 H 0.082 0.918 18 C 0.074 3.926 19 N -0.895 5.895 20 Si 0.882 3.118 21 H -0.277 1.277 22 H -0.264 1.264 23 H -0.294 1.294 24 C -0.166 4.166 25 C -0.161 4.161 26 C -0.161 4.161 27 H 0.048 0.952 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.417 0.583 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.036 0.964 39 H 0.048 0.952 40 H 0.265 0.735 41 H 0.098 0.902 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.795 5.955 7.326 23.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.271 6.271 3 C 0.053 3.947 4 C 0.070 3.930 5 H 0.117 0.883 6 C -0.236 4.236 7 N -0.882 5.882 8 S 2.789 3.211 9 O -0.975 6.975 10 O -0.958 6.958 11 N -0.825 5.825 12 C -0.039 4.039 13 C 0.136 3.864 14 H 0.074 0.926 15 C -0.223 4.223 16 C -0.560 4.560 17 H 0.100 0.900 18 C -0.129 4.129 19 N -0.533 5.533 20 Si 0.712 3.288 21 H -0.204 1.204 22 H -0.189 1.189 23 H -0.222 1.222 24 C -0.203 4.203 25 C -0.198 4.198 26 C -0.199 4.199 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.251 0.749 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.116 0.884 42 H 0.093 0.907 43 H 0.109 0.891 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.327 6.150 6.426 23.107 hybrid contribution -0.604 -1.229 0.620 1.503 sum -21.931 4.921 7.046 23.554 Atomic orbital electron populations 1.23064 0.81593 1.02490 1.00283 1.87910 1.19398 1.25408 1.94338 1.22785 0.92680 0.83286 0.95926 1.20657 0.90409 0.94832 0.87088 0.88303 1.22419 1.02839 1.02341 0.95962 1.56163 1.43851 1.40316 1.47831 1.01927 0.72424 0.73282 0.73494 1.93544 1.86704 1.34164 1.83124 1.93609 1.84960 1.60618 1.56661 1.57433 1.47705 1.19476 1.57918 1.21222 0.99313 0.87180 0.96155 1.19060 0.94155 0.80003 0.93147 0.92561 1.22528 0.98856 1.00658 1.00220 1.21170 0.90099 0.97892 1.46878 0.90024 1.24904 0.94708 0.98607 0.94679 1.69878 1.03061 1.31670 1.48678 0.86953 0.79333 0.84462 0.78075 1.20441 1.18884 1.22172 1.23613 0.98874 1.00128 0.97709 1.23323 0.97727 1.02203 0.96592 1.23549 0.98905 0.99837 0.97602 0.93345 0.89848 0.93386 0.90711 0.91848 0.91289 0.74883 0.92722 0.93236 0.90841 0.92221 0.94505 0.93345 0.92500 0.88394 0.90724 0.89094 0.90981 0.90582 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.17 101.05 0.93 1.10 16 2 O -0.35 -3.82 9.97 -35.23 -0.35 -4.17 16 3 C 0.09 0.97 1.06 -89.81 -0.10 0.88 16 4 C 0.18 2.13 2.52 -67.93 -0.17 1.96 16 5 H 0.10 1.15 6.97 -51.93 -0.36 0.79 16 6 C -0.18 -1.98 9.30 37.16 0.35 -1.64 16 7 N -1.12 -16.17 5.52 -4.89 -0.03 -16.19 16 8 S 2.78 52.53 6.08 -107.50 -0.65 51.88 16 9 O -0.99 -19.74 16.55 -57.17 -0.95 -20.68 16 10 O -0.97 -22.23 16.70 -57.17 -0.95 -23.18 16 11 N -0.98 -19.31 2.79 -115.84 -0.32 -19.63 16 12 C 0.11 1.80 8.39 59.85 0.50 2.30 16 13 C 0.24 5.54 2.21 -69.08 -0.15 5.39 16 14 H 0.06 1.39 5.97 -51.93 -0.31 1.08 16 15 C -0.16 -3.28 8.36 37.16 0.31 -2.97 16 16 C -0.52 -14.34 8.95 -34.44 -0.31 -14.65 16 17 H 0.08 2.44 7.89 -52.49 -0.41 2.02 16 18 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 19 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 20 Si 0.88 21.57 24.37 -169.99 -4.14 17.42 16 21 H -0.28 -6.45 6.87 56.52 0.39 -6.07 16 22 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 C -0.17 -1.60 6.89 -25.92 -0.18 -1.78 16 25 C -0.16 -1.20 7.30 -25.92 -0.19 -1.39 16 26 C -0.16 -1.28 6.16 -25.92 -0.16 -1.44 16 27 H 0.05 0.35 5.86 -51.93 -0.30 0.04 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.32 5.85 -51.93 -0.30 0.01 16 30 H 0.07 0.92 5.56 -51.93 -0.29 0.63 16 31 H 0.06 0.57 7.61 -51.93 -0.40 0.18 16 32 H 0.07 0.82 8.01 -51.93 -0.42 0.40 16 33 H 0.42 5.68 8.34 -34.47 -0.29 5.39 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.67 7.35 -51.93 -0.38 0.29 16 36 H 0.07 1.16 6.43 -51.93 -0.33 0.83 16 37 H 0.06 1.12 6.66 -51.93 -0.35 0.78 16 38 H 0.04 0.62 7.41 -51.93 -0.38 0.24 16 39 H 0.05 1.03 3.28 -51.93 -0.17 0.86 16 40 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.10 1.00 8.03 -51.93 -0.42 0.59 16 42 H 0.07 0.73 7.48 -51.93 -0.39 0.34 16 43 H 0.09 0.59 4.83 -51.93 -0.25 0.34 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.57 7.48 -51.93 -0.39 0.18 16 46 H 0.10 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -33.80 354.04 -7.57 -41.37 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -7.01 Total: 4.39 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 0.73 Total: -10.26 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: 0.42 Total: -62.11 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -2.25 Total: -48.04 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.14 Total: 17.42 kcal Atomic # 16 Polarization: 52.53 SS G_CDS: -0.65 Total: 51.88 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.80 -7.57 -41.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416616608.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.892 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds