Wall clock time and date at job start Tue Mar 31 2020 12:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42890 * 113.99820 * 2 1 4 4 C 1.53001 * 112.84760 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47158 * 173.80950 * 4 3 2 6 6 C 1.53002 * 109.46919 * 293.80104 * 4 3 2 7 7 N 1.46497 * 109.47332 * 53.80850 * 4 3 2 8 8 S 1.65595 * 120.00400 * 145.00258 * 7 4 3 9 9 O 1.42101 * 106.39876 * 311.45775 * 8 7 4 10 10 O 1.42096 * 106.40242 * 178.53750 * 8 7 4 11 11 N 1.65600 * 107.21978 * 64.99328 * 8 7 4 12 12 C 1.46502 * 120.00173 * 270.00411 * 11 8 7 13 13 C 1.46506 * 119.99915 * 90.00190 * 11 8 7 14 14 H 1.09005 * 109.46943 * 0.02562 * 13 11 8 15 15 C 1.53000 * 109.47074 * 240.00242 * 13 11 8 16 16 C 1.50696 * 109.46871 * 119.99703 * 13 11 8 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 13 11 18 18 C 1.37885 * 119.99717 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 13 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.53779 * 113.69447 * 311.26971 * 3 2 1 25 25 C 1.53784 * 87.08294 * 89.12934 * 24 3 2 26 26 C 1.53779 * 87.08011 * 25.43242 * 25 24 3 27 27 H 1.08998 * 109.47262 * 60.00105 * 1 2 3 28 28 H 1.08999 * 109.46857 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46649 * 299.99611 * 1 2 3 30 30 H 1.09001 * 109.46907 * 179.97438 * 6 4 3 31 31 H 1.08993 * 109.47370 * 299.99969 * 6 4 3 32 32 H 1.08996 * 109.46551 * 60.00736 * 6 4 3 33 33 H 0.96999 * 119.99336 * 324.99444 * 7 4 3 34 34 H 1.09005 * 109.46997 * 269.99464 * 12 11 8 35 35 H 1.08997 * 109.47497 * 29.99813 * 12 11 8 36 36 H 1.09004 * 109.47127 * 150.00311 * 12 11 8 37 37 H 1.08997 * 109.46749 * 299.99711 * 15 13 11 38 38 H 1.08996 * 109.47024 * 59.99854 * 15 13 11 39 39 H 1.08998 * 109.46637 * 179.97438 * 15 13 11 40 40 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 41 41 H 1.09002 * 113.61964 * 203.67604 * 24 3 2 42 42 H 1.09003 * 113.61504 * 334.57677 * 24 3 2 43 43 H 1.09001 * 113.61152 * 270.89128 * 25 24 3 44 44 H 1.08993 * 113.61744 * 139.98167 * 25 24 3 45 45 H 1.09000 * 113.61559 * 220.01993 * 26 25 24 46 46 H 1.09002 * 113.61407 * 89.12128 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5399 1.2747 -0.0006 5 1 3.9237 2.2889 -0.1114 6 6 4.0386 0.6821 1.3189 7 7 4.0114 0.4497 -1.1156 8 16 5.4031 0.8560 -1.9158 9 8 5.3015 2.2404 -2.2198 10 8 5.6038 -0.1443 -2.9050 11 7 6.6507 0.7044 -0.8375 12 6 7.0490 1.8477 -0.0127 13 6 7.3560 -0.5732 -0.7082 14 1 6.9229 -1.2987 -1.3969 15 6 7.2210 -1.0875 0.7264 16 6 8.8137 -0.3776 -1.0368 17 1 9.1783 0.6005 -1.3137 18 6 9.6819 -1.4475 -0.9838 19 7 10.9541 -1.2768 -1.2701 20 14 9.0509 -3.1394 -0.5055 21 1 9.1488 -3.3062 0.9668 22 1 7.6333 -3.2762 -0.9261 23 1 9.8693 -4.1809 -1.1771 24 6 1.4130 2.2477 -1.0584 25 6 0.3746 2.6522 0.0014 26 6 1.4130 2.2456 1.0603 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 5.1284 0.6598 1.3183 31 1 3.6879 1.2960 2.1484 32 1 3.6550 -0.3320 1.4297 33 1 3.5083 -0.3347 -1.3851 34 1 7.8122 2.4245 -0.5354 35 1 6.1813 2.4799 0.1756 36 1 7.4503 1.4896 0.9354 37 1 7.6544 -0.3619 1.4147 38 1 6.1667 -1.2288 0.9640 39 1 7.7454 -2.0382 0.8224 40 1 11.5649 -2.0294 -1.2325 41 1 2.0809 3.0593 -1.3472 42 1 0.9835 1.7269 -1.9142 43 1 -0.5168 2.0250 0.0008 44 1 0.1440 3.7174 0.0024 45 1 0.9834 1.7231 1.9150 46 1 2.0809 3.0566 1.3508 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416616608.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:10 Heat of formation + Delta-G solvation = -105.402432 kcal Electronic energy + Delta-G solvation = -27748.830752 eV Core-core repulsion = 23994.213907 eV Total energy + Delta-G solvation = -3754.616845 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.58624 -38.38973 -38.13608 -36.91467 -36.69219 -35.70304 -34.51784 -31.77536 -30.95265 -28.42056 -27.31832 -26.93768 -26.63034 -25.31492 -22.69796 -22.49166 -21.02870 -20.15957 -18.97556 -18.84646 -18.37170 -17.60734 -17.17409 -17.01542 -16.39786 -16.01423 -15.82498 -15.32953 -15.03438 -14.69534 -14.61032 -14.54375 -14.37498 -14.13603 -13.84753 -13.69665 -13.45841 -13.22806 -13.14851 -13.07333 -13.06032 -12.92900 -12.88487 -12.77725 -12.61163 -12.36155 -12.10696 -11.96692 -11.67115 -11.47080 -11.42103 -11.29363 -11.08976 -10.74635 -10.39449 -10.26553 -9.72999 -8.28499 -6.32994 -0.37186 1.30887 1.40359 1.48197 1.98140 2.33118 2.57331 2.76037 3.06596 3.37018 3.52701 3.54355 3.69694 3.90678 3.95483 4.15042 4.39921 4.43719 4.47413 4.53666 4.55727 4.61943 4.65314 4.72673 4.80538 4.81074 4.82868 4.85208 4.91001 5.01518 5.02150 5.07435 5.11579 5.14249 5.19497 5.28402 5.38304 5.49553 5.52197 5.63536 5.84327 6.13738 6.34389 6.37197 6.71579 7.31611 8.88277 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.004320 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.128741 B = 6479.660870 C = 6820.210620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.373 6.373 3 C 0.090 3.910 4 C 0.167 3.833 5 H 0.102 0.898 6 C -0.174 4.174 7 N -1.107 6.107 8 S 2.795 3.205 9 O -1.005 7.005 10 O -1.019 7.019 11 N -0.989 5.989 12 C 0.102 3.898 13 C 0.244 3.756 14 H 0.041 0.959 15 C -0.157 4.157 16 C -0.525 4.525 17 H 0.041 0.959 18 C 0.016 3.984 19 N -0.945 5.945 20 Si 0.940 3.060 21 H -0.252 1.252 22 H -0.250 1.250 23 H -0.301 1.301 24 C -0.176 4.176 25 C -0.151 4.151 26 C -0.153 4.153 27 H 0.052 0.948 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.423 0.577 34 H 0.032 0.968 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.039 0.961 40 H 0.266 0.734 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.103 0.897 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.782 5.745 9.738 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.292 6.292 3 C 0.048 3.952 4 C 0.060 3.940 5 H 0.120 0.880 6 C -0.233 4.233 7 N -0.869 5.869 8 S 2.804 3.196 9 O -0.989 6.989 10 O -1.003 7.003 11 N -0.830 5.830 12 C -0.044 4.044 13 C 0.138 3.862 14 H 0.058 0.942 15 C -0.215 4.215 16 C -0.564 4.564 17 H 0.059 0.941 18 C -0.182 4.182 19 N -0.585 5.585 20 Si 0.767 3.233 21 H -0.177 1.177 22 H -0.174 1.174 23 H -0.229 1.229 24 C -0.214 4.214 25 C -0.188 4.188 26 C -0.191 4.191 27 H 0.070 0.930 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.258 0.742 34 H 0.051 0.949 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.121 0.879 44 H 0.100 0.900 45 H 0.105 0.895 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -24.335 5.965 8.852 26.573 hybrid contribution 0.266 -1.031 -0.192 1.082 sum -24.069 4.935 8.660 26.051 Atomic orbital electron populations 1.23241 0.80138 1.03426 1.01192 1.87869 1.21046 1.25679 1.94556 1.22807 0.91340 0.83668 0.97365 1.21002 0.92050 0.94522 0.86412 0.88005 1.22394 1.02134 1.02585 0.96145 1.55740 1.41888 1.40883 1.48426 1.01259 0.72932 0.72382 0.73034 1.93520 1.87095 1.34803 1.83444 1.93542 1.85942 1.61860 1.58950 1.57342 1.48174 1.19138 1.58325 1.21411 1.00479 0.86627 0.95841 1.18811 0.91192 0.81319 0.94869 0.94151 1.22390 1.01251 1.00136 0.97771 1.21470 0.92825 0.96160 1.45942 0.94102 1.25760 0.94719 1.02885 0.94837 1.70034 1.04653 1.32998 1.50834 0.86004 0.79163 0.79021 0.79158 1.17704 1.17429 1.22851 1.23667 0.99732 0.99885 0.98090 1.23307 0.97503 1.03053 0.94970 1.23551 0.98826 0.99335 0.97389 0.92971 0.89049 0.91857 0.91663 0.89281 0.91728 0.74172 0.94878 0.89611 0.89627 0.91093 0.90941 0.94293 0.92464 0.89358 0.91434 0.87913 0.90037 0.89547 0.87719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.17 113.37 1.04 1.24 16 2 O -0.37 -7.11 9.97 -148.98 -1.48 -8.60 16 3 C 0.09 1.61 1.06 -10.27 -0.01 1.60 16 4 C 0.17 3.57 2.52 44.99 0.11 3.69 16 5 H 0.10 2.11 6.97 -2.38 -0.02 2.10 16 6 C -0.17 -3.30 9.30 71.98 0.67 -2.63 16 7 N -1.11 -30.26 5.52 -169.38 -0.94 -31.20 16 8 S 2.79 104.85 6.08 -56.49 -0.34 104.50 16 9 O -1.01 -39.72 16.55 -128.00 -2.12 -41.84 16 10 O -1.02 -47.18 16.70 -128.00 -2.14 -49.32 16 11 N -0.99 -38.34 2.79 -520.42 -1.45 -39.79 16 12 C 0.10 3.32 8.39 127.77 1.07 4.40 16 13 C 0.24 11.09 2.21 44.24 0.10 11.19 16 14 H 0.04 1.98 5.97 -2.38 -0.01 1.97 16 15 C -0.16 -5.88 8.36 71.98 0.60 -5.28 16 16 C -0.52 -29.58 8.95 25.60 0.23 -29.35 16 17 H 0.04 2.56 7.89 -2.91 -0.02 2.54 16 18 C 0.02 0.93 5.45 84.66 0.46 1.39 16 19 N -0.95 -58.93 13.96 21.45 0.30 -58.63 16 20 Si 0.94 44.14 24.37 68.60 1.67 45.81 16 21 H -0.25 -10.73 6.87 99.48 0.68 -10.05 16 22 H -0.25 -11.09 6.53 99.48 0.65 -10.44 16 23 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 24 C -0.18 -3.07 6.89 31.12 0.21 -2.86 16 25 C -0.15 -1.78 7.30 31.12 0.23 -1.56 16 26 C -0.15 -1.89 6.16 31.12 0.19 -1.70 16 27 H 0.05 0.62 5.86 -2.39 -0.01 0.60 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 0.61 5.85 -2.39 -0.01 0.59 16 30 H 0.06 1.37 5.56 -2.39 -0.01 1.36 16 31 H 0.09 1.24 7.61 -2.39 -0.02 1.22 16 32 H 0.06 1.30 8.01 -2.39 -0.02 1.28 16 33 H 0.42 10.97 8.34 -96.75 -0.81 10.16 16 34 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.09 2.14 7.35 -2.39 -0.02 2.13 16 36 H 0.09 2.57 6.43 -2.38 -0.02 2.55 16 37 H 0.07 2.48 6.66 -2.39 -0.02 2.46 16 38 H 0.07 2.19 7.41 -2.39 -0.02 2.17 16 39 H 0.04 1.54 3.28 -2.39 -0.01 1.53 16 40 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.09 1.69 8.03 -2.39 -0.02 1.67 16 42 H 0.07 1.24 7.48 -2.39 -0.02 1.23 16 43 H 0.10 0.97 4.83 -2.39 -0.01 0.96 16 44 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.09 0.92 7.48 -2.39 -0.02 0.91 16 46 H 0.10 1.11 8.10 -2.39 -0.02 1.09 16 Total: -1.00 -75.26 354.04 -1.48 -76.75 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.11 Total: 22.19 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 4.91 Total: -19.88 kcal Atomic # 7 Polarization: -127.53 SS G_CDS: -2.09 Total: -129.62 kcal Atomic # 8 Polarization: -94.01 SS G_CDS: -5.74 Total: -99.75 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.67 Total: 45.81 kcal Atomic # 16 Polarization: 104.85 SS G_CDS: -0.34 Total: 104.50 kcal Total: -75.26 -1.48 -76.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416616608.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.657 kcal (2) G-P(sol) polarization free energy of solvation -75.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds