Wall clock time and date at job start Tue Mar 31 2020 12:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99892 * 2 1 4 4 C 1.53002 * 112.85036 * 180.02562 * 3 2 1 5 5 H 1.08991 * 109.47090 * 180.74202 * 4 3 2 6 6 C 1.52997 * 109.46824 * 60.74455 * 4 3 2 7 7 N 1.46500 * 109.46752 * 300.74569 * 4 3 2 8 8 S 1.65603 * 119.99465 * 214.47203 * 7 4 3 9 9 O 1.42101 * 106.40212 * 313.26049 * 8 7 4 10 10 O 1.42102 * 106.39948 * 180.34582 * 8 7 4 11 11 N 1.65598 * 107.22008 * 66.80391 * 8 7 4 12 12 C 1.46497 * 119.99778 * 270.23682 * 11 8 7 13 13 C 1.46501 * 119.99836 * 90.23524 * 11 8 7 14 14 H 1.09001 * 109.47415 * 359.97438 * 13 11 8 15 15 C 1.53004 * 109.46865 * 239.97579 * 13 11 8 16 16 C 1.50706 * 109.46885 * 119.97940 * 13 11 8 17 17 H 1.07998 * 119.99699 * 359.97438 * 16 13 11 18 18 C 1.37871 * 119.99889 * 180.02562 * 16 13 11 19 19 N 1.31514 * 120.00340 * 179.97438 * 18 16 13 20 20 Si 1.86805 * 119.99945 * 359.97438 * 18 16 13 21 21 H 1.48496 * 109.47123 * 269.99749 * 20 18 16 22 22 H 1.48495 * 109.47123 * 30.00430 * 20 18 16 23 23 H 1.48505 * 109.46974 * 150.00116 * 20 18 16 24 24 C 1.53783 * 113.61269 * 311.19657 * 3 2 1 25 25 C 1.53953 * 87.01852 * 89.23144 * 24 3 2 26 26 C 1.53777 * 87.11432 * 25.35978 * 25 24 3 27 27 H 1.08996 * 109.47068 * 299.99830 * 1 2 3 28 28 H 1.08997 * 109.47243 * 60.00121 * 1 2 3 29 29 H 1.09006 * 109.46951 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47404 * 60.00556 * 6 4 3 31 31 H 1.09004 * 109.47071 * 179.97438 * 6 4 3 32 32 H 1.09006 * 109.47473 * 299.99792 * 6 4 3 33 33 H 0.96993 * 120.00404 * 34.47454 * 7 4 3 34 34 H 1.08996 * 109.47103 * 270.00075 * 12 11 8 35 35 H 1.09002 * 109.47113 * 30.00064 * 12 11 8 36 36 H 1.09003 * 109.46910 * 149.99617 * 12 11 8 37 37 H 1.08996 * 109.47126 * 302.24991 * 15 13 11 38 38 H 1.09000 * 109.47050 * 62.25148 * 15 13 11 39 39 H 1.09001 * 109.46760 * 182.24726 * 15 13 11 40 40 H 0.96997 * 120.00328 * 179.97438 * 19 18 16 41 41 H 1.09005 * 113.61412 * 203.74926 * 24 3 2 42 42 H 1.09002 * 113.61739 * 334.65374 * 24 3 2 43 43 H 1.09005 * 113.53708 * 270.80825 * 25 24 3 44 44 H 1.09002 * 113.74432 * 139.94754 * 25 24 3 45 45 H 1.08995 * 113.61918 * 220.09302 * 26 25 24 46 46 H 1.09002 * 113.68954 * 89.19437 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5400 1.2748 -0.0006 5 1 3.9238 2.2948 0.0127 6 6 4.0351 0.5600 -1.2595 7 7 4.0144 0.5588 1.1861 8 16 5.4152 1.0308 1.9328 9 8 6.3786 1.2080 0.9034 10 8 5.6030 0.1465 3.0292 11 7 5.1435 2.5297 2.5822 12 6 5.4121 3.7314 1.7885 13 6 4.6346 2.6540 3.9504 14 1 4.4965 1.6611 4.3783 15 6 3.2944 3.3918 3.9308 16 6 5.6221 3.4280 4.7852 17 1 6.5373 3.7906 4.3412 18 6 5.3575 3.6722 6.1161 19 7 6.2194 4.3472 6.8449 20 14 3.7747 3.0443 6.8842 21 1 2.7130 4.0726 6.7409 22 1 3.3520 1.7973 6.1977 23 1 4.0009 2.7639 8.3249 24 6 1.4129 2.2457 -1.0603 25 6 0.3746 2.6521 0.0013 26 6 1.4129 2.2457 1.0602 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.6821 1.0927 -2.1425 31 1 5.1249 0.5385 -1.2602 32 1 3.6513 -0.4602 -1.2729 33 1 3.5082 -0.1916 1.5345 34 1 6.4423 4.0496 1.9483 35 1 5.2597 3.5107 0.7321 36 1 4.7341 4.5281 2.0947 37 1 3.4245 4.3693 3.4665 38 1 2.5688 2.8122 3.3602 39 1 2.9351 3.5195 4.9520 40 1 6.0330 4.5194 7.7811 41 1 2.0808 3.0567 -1.3507 42 1 0.9833 1.7231 -1.9150 43 1 -0.5170 2.0250 0.0007 44 1 0.1428 3.7172 0.0032 45 1 0.9834 1.7231 1.9149 46 1 2.0815 3.0558 1.3516 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416616619.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:14 Heat of formation + Delta-G solvation = -78.064100 kcal Electronic energy + Delta-G solvation = -28092.144648 eV Core-core repulsion = 24338.713282 eV Total energy + Delta-G solvation = -3753.431366 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.83624 -36.79211 -36.46227 -35.69815 -35.27474 -34.89085 -32.50207 -30.09659 -29.93082 -27.69937 -26.07789 -25.69983 -24.99636 -24.61745 -21.64063 -20.99438 -20.16322 -18.80925 -17.45443 -17.19081 -16.91909 -16.37935 -16.15259 -15.50254 -15.31800 -15.07384 -14.47589 -13.84873 -13.74473 -13.65466 -13.60551 -13.33944 -12.97506 -12.66131 -12.45420 -12.41524 -12.28856 -12.14536 -12.07249 -11.96918 -11.56535 -11.52584 -11.50429 -11.42295 -11.20425 -11.10093 -10.95326 -10.65014 -10.51481 -10.25918 -10.14326 -9.66222 -9.55665 -9.39183 -9.27788 -8.63457 -8.11935 -6.12376 -4.12678 1.12361 3.20726 3.33348 3.35691 3.36365 3.45363 4.05780 4.25570 4.33143 4.34473 4.45471 4.61676 4.88382 4.89972 5.06118 5.11535 5.17387 5.25267 5.31136 5.38765 5.41108 5.48390 5.52121 5.61588 5.69290 5.71822 5.84671 5.87975 5.96216 6.04036 6.13734 6.18572 6.25448 6.29417 6.33949 6.48180 6.55281 6.79506 7.02986 7.15210 7.29606 7.44761 7.63816 8.47393 8.92289 9.47637 11.00662 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.005465 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.371393 B = 5122.304809 C = 5987.615931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.354 6.354 3 C 0.092 3.908 4 C 0.182 3.818 5 H 0.094 0.906 6 C -0.169 4.169 7 N -1.124 6.124 8 S 2.779 3.221 9 O -0.989 6.989 10 O -0.975 6.975 11 N -0.985 5.985 12 C 0.107 3.893 13 C 0.241 3.759 14 H 0.057 0.943 15 C -0.166 4.166 16 C -0.521 4.521 17 H 0.082 0.918 18 C 0.074 3.926 19 N -0.894 5.894 20 Si 0.881 3.119 21 H -0.278 1.278 22 H -0.264 1.264 23 H -0.294 1.294 24 C -0.161 4.161 25 C -0.161 4.161 26 C -0.165 4.165 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.417 0.583 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.036 0.964 39 H 0.049 0.951 40 H 0.265 0.735 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.746 -4.086 -16.748 22.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.272 6.272 3 C 0.051 3.949 4 C 0.075 3.925 5 H 0.111 0.889 6 C -0.228 4.228 7 N -0.882 5.882 8 S 2.788 3.212 9 O -0.972 6.972 10 O -0.958 6.958 11 N -0.827 5.827 12 C -0.039 4.039 13 C 0.136 3.864 14 H 0.074 0.926 15 C -0.224 4.224 16 C -0.561 4.561 17 H 0.100 0.900 18 C -0.129 4.129 19 N -0.532 5.532 20 Si 0.711 3.289 21 H -0.205 1.205 22 H -0.189 1.189 23 H -0.221 1.221 24 C -0.199 4.199 25 C -0.198 4.198 26 C -0.203 4.203 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.250 0.750 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.643 -4.537 -16.599 21.353 hybrid contribution -1.698 0.001 0.773 1.866 sum -14.341 -4.536 -15.826 21.833 Atomic orbital electron populations 1.23060 0.81568 1.02406 1.00380 1.87895 1.19425 1.25479 1.94377 1.22834 0.92663 0.83315 0.96116 1.20594 0.90226 0.95908 0.85817 0.88851 1.22263 1.02552 1.01652 0.96327 1.56214 1.46556 1.45225 1.40188 1.01991 0.73350 0.73177 0.72712 1.93554 1.58111 1.86457 1.59069 1.93611 1.84725 1.64489 1.53018 1.57467 1.80921 1.20807 1.23455 1.21246 1.02193 0.88532 0.91972 1.19053 0.91564 0.97902 0.77836 0.92568 1.22568 0.98282 1.01254 1.00316 1.21167 1.05728 1.34928 0.94230 0.90005 1.24904 0.96626 0.94492 0.96881 1.69872 1.35640 1.39811 1.07885 0.86963 0.83809 0.79836 0.78274 1.20483 1.18893 1.22128 1.23576 0.99016 0.99774 0.97535 1.23343 0.97692 1.02272 0.96490 1.23670 0.98857 1.00140 0.97609 0.93219 0.93427 0.89933 0.91928 0.90998 0.91486 0.74963 0.92607 0.93266 0.90885 0.92268 0.94535 0.93268 0.92478 0.88714 0.90676 0.89182 0.90928 0.90541 0.88082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.17 101.05 0.93 1.10 16 2 O -0.35 -3.86 9.97 -35.23 -0.35 -4.21 16 3 C 0.09 0.96 1.01 -89.81 -0.09 0.87 16 4 C 0.18 2.19 2.29 -67.93 -0.16 2.03 16 5 H 0.09 1.06 6.18 -51.93 -0.32 0.74 16 6 C -0.17 -1.91 9.31 37.16 0.35 -1.56 16 7 N -1.12 -16.09 5.51 -4.89 -0.03 -16.11 16 8 S 2.78 52.29 6.02 -107.50 -0.65 51.64 16 9 O -0.99 -19.70 16.39 -57.17 -0.94 -20.63 16 10 O -0.97 -22.15 16.70 -57.17 -0.95 -23.11 16 11 N -0.98 -19.09 3.12 -115.85 -0.36 -19.45 16 12 C 0.11 1.76 9.39 59.85 0.56 2.32 16 13 C 0.24 5.47 2.22 -69.08 -0.15 5.31 16 14 H 0.06 1.37 5.96 -51.93 -0.31 1.06 16 15 C -0.17 -3.23 8.71 37.16 0.32 -2.90 16 16 C -0.52 -14.23 8.95 -34.44 -0.31 -14.54 16 17 H 0.08 2.43 7.89 -52.49 -0.41 2.01 16 18 C 0.07 2.08 5.45 -17.82 -0.10 1.99 16 19 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 20 Si 0.88 21.35 24.39 -169.99 -4.15 17.20 16 21 H -0.28 -6.39 6.85 56.52 0.39 -6.00 16 22 H -0.26 -6.16 6.53 56.52 0.37 -5.79 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 24 C -0.16 -1.33 6.42 -25.83 -0.17 -1.50 16 25 C -0.16 -1.32 7.30 -25.83 -0.19 -1.51 16 26 C -0.17 -1.73 6.12 -25.92 -0.16 -1.89 16 27 H 0.05 0.39 5.86 -51.93 -0.30 0.09 16 28 H 0.05 0.33 5.86 -51.93 -0.30 0.02 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.57 7.79 -51.93 -0.40 0.17 16 31 H 0.07 0.92 7.59 -51.93 -0.39 0.52 16 32 H 0.07 0.76 7.87 -51.93 -0.41 0.35 16 33 H 0.42 5.61 8.52 -34.47 -0.29 5.32 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.65 6.16 -51.93 -0.32 0.33 16 36 H 0.07 1.13 6.38 -51.93 -0.33 0.79 16 37 H 0.06 1.08 6.57 -51.93 -0.34 0.73 16 38 H 0.04 0.59 6.38 -51.93 -0.33 0.26 16 39 H 0.05 1.03 3.24 -51.93 -0.17 0.86 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 42 H 0.07 0.57 7.48 -51.93 -0.39 0.19 16 43 H 0.09 0.65 4.83 -51.93 -0.25 0.40 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.86 7.47 -51.93 -0.39 0.47 16 46 H 0.10 1.12 7.20 -51.93 -0.37 0.75 16 LS Contribution 352.93 15.07 5.32 5.32 Total: -1.00 -33.54 352.93 -7.41 -40.95 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.92 Total: 4.77 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 0.84 Total: -10.27 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 0.39 Total: -61.66 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -2.24 Total: -47.95 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.15 Total: 17.20 kcal Atomic # 16 Polarization: 52.29 SS G_CDS: -0.65 Total: 51.64 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.54 -7.41 -40.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416616619.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.110 kcal (2) G-P(sol) polarization free energy of solvation -33.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds