Wall clock time and date at job start Tue Mar 31 2020 12:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99892 * 2 1 4 4 C 1.53002 * 112.85036 * 180.02562 * 3 2 1 5 5 H 1.08991 * 109.47090 * 180.74202 * 4 3 2 6 6 C 1.52997 * 109.46824 * 60.74455 * 4 3 2 7 7 N 1.46500 * 109.46752 * 300.74569 * 4 3 2 8 8 S 1.65603 * 119.99465 * 214.47203 * 7 4 3 9 9 O 1.42101 * 106.40212 * 313.26049 * 8 7 4 10 10 O 1.42102 * 106.39948 * 180.34582 * 8 7 4 11 11 N 1.65598 * 107.22008 * 66.80391 * 8 7 4 12 12 C 1.46497 * 119.99778 * 270.23682 * 11 8 7 13 13 C 1.46501 * 119.99836 * 90.23524 * 11 8 7 14 14 H 1.09001 * 109.47415 * 359.97438 * 13 11 8 15 15 C 1.53004 * 109.46865 * 239.97579 * 13 11 8 16 16 C 1.50706 * 109.46885 * 119.97940 * 13 11 8 17 17 H 1.07998 * 119.99699 * 359.97438 * 16 13 11 18 18 C 1.37871 * 119.99889 * 180.02562 * 16 13 11 19 19 N 1.31514 * 120.00340 * 179.97438 * 18 16 13 20 20 Si 1.86805 * 119.99945 * 359.97438 * 18 16 13 21 21 H 1.48496 * 109.47123 * 269.99749 * 20 18 16 22 22 H 1.48495 * 109.47123 * 30.00430 * 20 18 16 23 23 H 1.48505 * 109.46974 * 150.00116 * 20 18 16 24 24 C 1.53783 * 113.61269 * 311.19657 * 3 2 1 25 25 C 1.53953 * 87.01852 * 89.23144 * 24 3 2 26 26 C 1.53777 * 87.11432 * 25.35978 * 25 24 3 27 27 H 1.08996 * 109.47068 * 299.99830 * 1 2 3 28 28 H 1.08997 * 109.47243 * 60.00121 * 1 2 3 29 29 H 1.09006 * 109.46951 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47404 * 60.00556 * 6 4 3 31 31 H 1.09004 * 109.47071 * 179.97438 * 6 4 3 32 32 H 1.09006 * 109.47473 * 299.99792 * 6 4 3 33 33 H 0.96993 * 120.00404 * 34.47454 * 7 4 3 34 34 H 1.08996 * 109.47103 * 270.00075 * 12 11 8 35 35 H 1.09002 * 109.47113 * 30.00064 * 12 11 8 36 36 H 1.09003 * 109.46910 * 149.99617 * 12 11 8 37 37 H 1.08996 * 109.47126 * 302.24991 * 15 13 11 38 38 H 1.09000 * 109.47050 * 62.25148 * 15 13 11 39 39 H 1.09001 * 109.46760 * 182.24726 * 15 13 11 40 40 H 0.96997 * 120.00328 * 179.97438 * 19 18 16 41 41 H 1.09005 * 113.61412 * 203.74926 * 24 3 2 42 42 H 1.09002 * 113.61739 * 334.65374 * 24 3 2 43 43 H 1.09005 * 113.53708 * 270.80825 * 25 24 3 44 44 H 1.09002 * 113.74432 * 139.94754 * 25 24 3 45 45 H 1.08995 * 113.61918 * 220.09302 * 26 25 24 46 46 H 1.09002 * 113.68954 * 89.19437 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5400 1.2748 -0.0006 5 1 3.9238 2.2948 0.0127 6 6 4.0351 0.5600 -1.2595 7 7 4.0144 0.5588 1.1861 8 16 5.4152 1.0308 1.9328 9 8 6.3786 1.2080 0.9034 10 8 5.6030 0.1465 3.0292 11 7 5.1435 2.5297 2.5822 12 6 5.4121 3.7314 1.7885 13 6 4.6346 2.6540 3.9504 14 1 4.4965 1.6611 4.3783 15 6 3.2944 3.3918 3.9308 16 6 5.6221 3.4280 4.7852 17 1 6.5373 3.7906 4.3412 18 6 5.3575 3.6722 6.1161 19 7 6.2194 4.3472 6.8449 20 14 3.7747 3.0443 6.8842 21 1 2.7130 4.0726 6.7409 22 1 3.3520 1.7973 6.1977 23 1 4.0009 2.7639 8.3249 24 6 1.4129 2.2457 -1.0603 25 6 0.3746 2.6521 0.0013 26 6 1.4129 2.2457 1.0602 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.6821 1.0927 -2.1425 31 1 5.1249 0.5385 -1.2602 32 1 3.6513 -0.4602 -1.2729 33 1 3.5082 -0.1916 1.5345 34 1 6.4423 4.0496 1.9483 35 1 5.2597 3.5107 0.7321 36 1 4.7341 4.5281 2.0947 37 1 3.4245 4.3693 3.4665 38 1 2.5688 2.8122 3.3602 39 1 2.9351 3.5195 4.9520 40 1 6.0330 4.5194 7.7811 41 1 2.0808 3.0567 -1.3507 42 1 0.9833 1.7231 -1.9150 43 1 -0.5170 2.0250 0.0007 44 1 0.1428 3.7172 0.0032 45 1 0.9834 1.7231 1.9149 46 1 2.0815 3.0558 1.3516 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416616619.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:13 Heat of formation + Delta-G solvation = -105.208168 kcal Electronic energy + Delta-G solvation = -28093.321703 eV Core-core repulsion = 24338.713282 eV Total energy + Delta-G solvation = -3754.608421 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.56096 -38.40129 -38.09352 -36.91080 -36.69634 -35.65629 -34.53030 -31.79776 -30.98304 -28.36942 -27.41576 -26.94630 -26.53421 -25.35186 -22.71670 -22.49505 -20.98005 -20.18757 -18.97537 -18.83822 -18.27880 -17.76296 -17.23886 -16.91771 -16.35426 -16.00211 -15.85002 -15.27923 -15.07390 -14.62513 -14.57796 -14.54142 -14.36633 -14.15322 -13.86283 -13.75037 -13.47497 -13.25096 -13.13719 -13.05659 -13.04357 -12.91019 -12.83510 -12.77086 -12.67123 -12.35391 -12.19435 -11.99074 -11.65428 -11.46512 -11.38830 -11.28567 -11.06133 -10.74635 -10.36204 -10.26432 -9.75188 -8.29245 -6.33865 -0.37817 1.28937 1.39072 1.46743 1.98913 2.31861 2.54471 2.80229 3.05687 3.38579 3.54036 3.56265 3.69667 3.88653 3.96315 4.14378 4.39005 4.43770 4.46950 4.52887 4.57075 4.61872 4.63932 4.72432 4.77435 4.84970 4.85266 4.87041 4.92954 4.98310 5.05550 5.11709 5.12970 5.15691 5.21569 5.26383 5.39928 5.45230 5.50581 5.62003 5.83087 6.13336 6.34827 6.36751 6.70867 7.30686 8.87508 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.005465 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.371393 B = 5122.304809 C = 5987.615931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.373 6.373 3 C 0.090 3.910 4 C 0.171 3.829 5 H 0.102 0.898 6 C -0.166 4.166 7 N -1.107 6.107 8 S 2.794 3.206 9 O -1.003 7.003 10 O -1.019 7.019 11 N -0.990 5.990 12 C 0.100 3.900 13 C 0.244 3.756 14 H 0.040 0.960 15 C -0.158 4.158 16 C -0.525 4.525 17 H 0.040 0.960 18 C 0.015 3.985 19 N -0.945 5.945 20 Si 0.939 3.061 21 H -0.251 1.251 22 H -0.250 1.250 23 H -0.301 1.301 24 C -0.153 4.153 25 C -0.152 4.152 26 C -0.176 4.176 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.422 0.578 34 H 0.033 0.967 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.266 0.734 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.047 -4.117 -18.767 25.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.292 6.292 3 C 0.048 3.952 4 C 0.064 3.936 5 H 0.120 0.880 6 C -0.225 4.225 7 N -0.869 5.869 8 S 2.803 3.197 9 O -0.986 6.986 10 O -1.003 7.003 11 N -0.831 5.831 12 C -0.045 4.045 13 C 0.138 3.862 14 H 0.058 0.942 15 C -0.217 4.217 16 C -0.564 4.564 17 H 0.059 0.941 18 C -0.183 4.183 19 N -0.585 5.585 20 Si 0.766 3.234 21 H -0.176 1.176 22 H -0.174 1.174 23 H -0.229 1.229 24 C -0.191 4.191 25 C -0.189 4.189 26 C -0.213 4.213 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.258 0.742 34 H 0.052 0.948 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.123 0.877 42 H 0.103 0.897 43 H 0.118 0.882 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.951 -4.563 -18.654 24.965 hybrid contribution -0.587 -0.020 1.283 1.411 sum -16.539 -4.584 -17.371 24.419 Atomic orbital electron populations 1.23224 0.80185 1.03347 1.01157 1.87864 1.20973 1.25757 1.94573 1.22827 0.91239 0.83668 0.97467 1.20955 0.91889 0.96052 0.84711 0.88010 1.22235 1.01308 1.01931 0.97034 1.55788 1.45292 1.45321 1.40537 1.01330 0.73911 0.72509 0.71987 1.93531 1.59414 1.86542 1.59112 1.93543 1.85855 1.65817 1.55080 1.57370 1.81131 1.21937 1.22623 1.21449 1.01291 0.88052 0.93713 1.18808 0.92196 0.96502 0.78665 0.94202 1.22426 0.96728 1.02076 1.00436 1.21470 1.05405 1.34522 0.95008 0.94129 1.25766 1.00232 0.94765 0.97498 1.70030 1.38125 1.41997 1.08324 0.86016 0.80224 0.80469 0.76722 1.17650 1.17367 1.22887 1.23580 0.98875 0.99327 0.97321 1.23323 0.97512 1.02966 0.95091 1.23729 0.99715 1.00003 0.97890 0.93068 0.91916 0.89085 0.89371 0.92834 0.91715 0.74217 0.94819 0.89591 0.89528 0.90972 0.90899 0.94314 0.92466 0.87680 0.89655 0.88156 0.90159 0.91443 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.17 113.37 1.04 1.25 16 2 O -0.37 -7.07 9.97 -148.98 -1.49 -8.56 16 3 C 0.09 1.58 1.01 -10.27 -0.01 1.57 16 4 C 0.17 3.65 2.29 44.99 0.10 3.76 16 5 H 0.10 1.99 6.18 -2.39 -0.01 1.97 16 6 C -0.17 -3.36 9.31 71.98 0.67 -2.69 16 7 N -1.11 -30.04 5.51 -169.40 -0.93 -30.97 16 8 S 2.79 104.28 6.02 -56.49 -0.34 103.94 16 9 O -1.00 -39.67 16.39 -128.00 -2.10 -41.77 16 10 O -1.02 -47.02 16.70 -128.00 -2.14 -49.16 16 11 N -0.99 -37.84 3.12 -520.43 -1.62 -39.46 16 12 C 0.10 3.21 9.39 127.77 1.20 4.41 16 13 C 0.24 10.94 2.22 44.25 0.10 11.04 16 14 H 0.04 1.94 5.96 -2.39 -0.01 1.92 16 15 C -0.16 -5.76 8.71 71.98 0.63 -5.13 16 16 C -0.52 -29.36 8.95 25.60 0.23 -29.13 16 17 H 0.04 2.53 7.89 -2.91 -0.02 2.51 16 18 C 0.02 0.89 5.45 84.65 0.46 1.35 16 19 N -0.94 -58.61 13.96 21.44 0.30 -58.31 16 20 Si 0.94 43.68 24.39 68.60 1.67 45.35 16 21 H -0.25 -10.56 6.85 99.48 0.68 -9.88 16 22 H -0.25 -10.92 6.53 99.48 0.65 -10.28 16 23 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 24 C -0.15 -1.90 6.42 31.18 0.20 -1.70 16 25 C -0.15 -1.89 7.30 31.18 0.23 -1.66 16 26 C -0.18 -3.09 6.12 31.12 0.19 -2.90 16 27 H 0.05 0.65 5.86 -2.39 -0.01 0.64 16 28 H 0.06 0.62 5.86 -2.39 -0.01 0.61 16 29 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.09 1.32 7.79 -2.39 -0.02 1.30 16 31 H 0.05 1.28 7.59 -2.38 -0.02 1.26 16 32 H 0.06 1.33 7.87 -2.38 -0.02 1.32 16 33 H 0.42 10.81 8.52 -96.75 -0.82 9.99 16 34 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.09 2.09 6.16 -2.39 -0.01 2.07 16 36 H 0.09 2.52 6.38 -2.39 -0.02 2.50 16 37 H 0.07 2.42 6.57 -2.39 -0.02 2.41 16 38 H 0.07 2.11 6.38 -2.39 -0.02 2.10 16 39 H 0.04 1.50 3.24 -2.39 -0.01 1.49 16 40 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 41 H 0.10 1.11 8.10 -2.38 -0.02 1.09 16 42 H 0.08 0.92 7.48 -2.39 -0.02 0.90 16 43 H 0.10 1.04 4.83 -2.38 -0.01 1.03 16 44 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.07 1.30 7.47 -2.39 -0.02 1.28 16 46 H 0.10 1.78 7.20 -2.39 -0.02 1.76 16 Total: -1.00 -74.98 352.93 -1.51 -76.49 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.10 Total: 22.28 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 5.04 Total: -19.83 kcal Atomic # 7 Polarization: -126.49 SS G_CDS: -2.26 Total: -128.74 kcal Atomic # 8 Polarization: -93.76 SS G_CDS: -5.72 Total: -99.48 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.67 Total: 45.35 kcal Atomic # 16 Polarization: 104.28 SS G_CDS: -0.34 Total: 103.94 kcal Total: -74.98 -1.51 -76.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416616619.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.716 kcal (2) G-P(sol) polarization free energy of solvation -74.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds