Wall clock time and date at job start Tue Mar 31 2020 12:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42906 * 113.99723 * 2 1 4 4 C 1.52998 * 112.84904 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47282 * 170.33567 * 4 3 2 6 6 C 1.52998 * 109.47502 * 50.32956 * 4 3 2 7 7 N 1.46499 * 109.46902 * 290.32936 * 4 3 2 8 8 S 1.65606 * 120.00304 * 214.99983 * 7 4 3 9 9 O 1.42102 * 106.39648 * 311.46114 * 8 7 4 10 10 O 1.42102 * 106.40380 * 178.54356 * 8 7 4 11 11 N 1.65596 * 107.21344 * 65.00153 * 8 7 4 12 12 C 1.46506 * 119.99952 * 269.99940 * 11 8 7 13 13 C 1.46500 * 120.00275 * 90.00534 * 11 8 7 14 14 H 1.09000 * 109.46738 * 359.97438 * 13 11 8 15 15 C 1.52994 * 109.47343 * 119.99285 * 13 11 8 16 16 C 1.50696 * 109.47099 * 240.00029 * 13 11 8 17 17 H 1.07992 * 120.00088 * 354.25881 * 16 13 11 18 18 C 1.37876 * 119.99760 * 174.26527 * 16 13 11 19 19 N 1.31516 * 119.99873 * 153.79385 * 18 16 13 20 20 Si 1.86802 * 120.00368 * 334.06645 * 18 16 13 21 21 H 1.48493 * 109.47424 * 179.72639 * 20 18 16 22 22 H 1.48502 * 109.46872 * 299.72592 * 20 18 16 23 23 H 1.48501 * 109.47039 * 59.72359 * 20 18 16 24 24 C 1.53776 * 113.61312 * 311.19269 * 3 2 1 25 25 C 1.53957 * 87.02165 * 89.22987 * 24 3 2 26 26 C 1.53781 * 87.10958 * 25.36078 * 25 24 3 27 27 H 1.09007 * 109.46587 * 60.00570 * 1 2 3 28 28 H 1.09003 * 109.46579 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47354 * 300.00398 * 1 2 3 30 30 H 1.09006 * 109.46843 * 59.99804 * 6 4 3 31 31 H 1.08996 * 109.47453 * 180.02562 * 6 4 3 32 32 H 1.09005 * 109.46814 * 300.00360 * 6 4 3 33 33 H 0.97001 * 120.00305 * 35.00625 * 7 4 3 34 34 H 1.08998 * 109.46842 * 270.00325 * 12 11 8 35 35 H 1.08997 * 109.47144 * 30.00564 * 12 11 8 36 36 H 1.09002 * 109.47068 * 150.00412 * 12 11 8 37 37 H 1.09002 * 109.47377 * 52.81918 * 15 13 11 38 38 H 1.09002 * 109.47489 * 172.81798 * 15 13 11 39 39 H 1.09003 * 109.47530 * 292.81449 * 15 13 11 40 40 H 0.96999 * 119.99923 * 355.20856 * 19 18 16 41 41 H 1.09000 * 113.61646 * 203.74959 * 24 3 2 42 42 H 1.09004 * 113.61788 * 334.65259 * 24 3 2 43 43 H 1.08999 * 113.53610 * 270.80862 * 25 24 3 44 44 H 1.09001 * 113.74363 * 139.93903 * 25 24 3 45 45 H 1.08995 * 113.61740 * 220.09031 * 26 25 24 46 46 H 1.09003 * 113.69019 * 89.20059 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5399 1.2749 0.0006 5 1 3.9236 2.2804 -0.1719 6 6 4.0319 0.3438 -1.1093 7 7 4.0180 0.7856 1.2961 8 16 5.4138 1.3940 1.9473 9 8 6.3892 1.3530 0.9148 10 8 5.5840 0.7514 3.2033 11 7 5.1451 2.9951 2.2737 12 6 5.4350 4.0087 1.2564 13 6 4.6175 3.3980 3.5797 14 1 4.4651 2.5136 4.1984 15 6 5.6138 4.3350 4.2652 16 6 3.3036 4.1117 3.3922 17 1 2.9467 4.3334 2.3974 18 6 2.5573 4.4818 4.4908 19 7 1.7305 5.5014 4.4109 20 14 2.7260 3.5398 6.0951 21 1 1.8275 4.1358 7.1161 22 1 2.3531 2.1191 5.8764 23 1 4.1317 3.6154 6.5680 24 6 1.4130 2.2457 -1.0603 25 6 0.3745 2.6522 0.0011 26 6 1.4128 2.2457 1.0602 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.6762 0.7079 -2.0732 31 1 5.1216 0.3216 -1.1085 32 1 3.6482 -0.6618 -0.9366 33 1 3.5170 0.1051 1.7725 34 1 6.4654 4.3474 1.3645 35 1 5.2961 3.5784 0.2647 36 1 4.7593 4.8545 1.3834 37 1 5.8635 5.1552 3.5921 38 1 5.1686 4.7353 5.1761 39 1 6.5192 3.7823 4.5159 40 1 1.6963 6.0359 3.6022 41 1 2.0809 3.0566 -1.3507 42 1 0.9835 1.7231 -1.9150 43 1 -0.5170 2.0250 0.0005 44 1 0.1428 3.7172 0.0031 45 1 0.9833 1.7232 1.9149 46 1 2.0813 3.0559 1.3517 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416616621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:17 Heat of formation + Delta-G solvation = -88.100423 kcal Electronic energy + Delta-G solvation = -28426.553126 eV Core-core repulsion = 24672.686552 eV Total energy + Delta-G solvation = -3753.866574 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.51827 -36.80627 -36.37979 -35.53694 -35.32425 -34.58192 -32.64816 -29.83335 -29.80429 -27.42785 -25.72398 -25.53849 -24.68604 -24.40438 -21.37491 -20.70406 -19.91213 -18.75492 -17.59868 -17.32442 -16.90807 -16.53882 -15.97127 -15.29142 -15.02159 -14.79109 -14.00615 -13.77577 -13.57781 -13.41219 -13.38751 -13.30553 -12.96756 -12.53262 -12.24856 -12.20816 -12.04340 -12.00891 -11.86315 -11.66571 -11.56682 -11.48810 -11.41507 -11.33550 -11.19450 -10.78856 -10.60207 -10.51935 -10.31832 -10.13790 -10.01689 -9.81927 -9.34383 -9.25052 -9.09592 -8.43284 -8.03529 -6.56300 -4.16539 1.17614 3.37605 3.38238 3.44772 3.58621 3.67934 4.08696 4.42706 4.58337 4.65463 4.71557 4.91366 5.02907 5.07034 5.12175 5.29835 5.35789 5.46830 5.48974 5.53070 5.63563 5.68267 5.79620 5.93271 5.99609 6.02050 6.07570 6.09518 6.13505 6.28896 6.35456 6.39783 6.46578 6.48325 6.54940 6.65861 6.71374 6.98569 7.26861 7.31512 7.33402 7.54163 7.96497 8.27448 8.80848 9.46227 10.78063 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.007222 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.745957 B = 3876.239116 C = 5149.657013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.357 6.357 3 C 0.089 3.911 4 C 0.186 3.814 5 H 0.091 0.909 6 C -0.167 4.167 7 N -1.117 6.117 8 S 2.781 3.219 9 O -0.994 6.994 10 O -0.985 6.985 11 N -0.986 5.986 12 C 0.105 3.895 13 C 0.248 3.752 14 H 0.046 0.954 15 C -0.151 4.151 16 C -0.617 4.617 17 H 0.070 0.930 18 C 0.049 3.951 19 N -0.887 5.887 20 Si 1.018 2.982 21 H -0.284 1.284 22 H -0.280 1.280 23 H -0.275 1.275 24 C -0.159 4.159 25 C -0.162 4.162 26 C -0.156 4.156 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.416 0.584 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.025 0.975 40 H 0.270 0.730 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.046 -6.364 -10.574 12.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.276 6.276 3 C 0.048 3.952 4 C 0.078 3.922 5 H 0.109 0.891 6 C -0.226 4.226 7 N -0.875 5.875 8 S 2.789 3.211 9 O -0.978 6.978 10 O -0.969 6.969 11 N -0.828 5.828 12 C -0.042 4.042 13 C 0.143 3.857 14 H 0.063 0.937 15 C -0.211 4.211 16 C -0.655 4.655 17 H 0.088 0.912 18 C -0.159 4.159 19 N -0.519 5.519 20 Si 0.845 3.155 21 H -0.210 1.210 22 H -0.206 1.206 23 H -0.201 1.201 24 C -0.198 4.198 25 C -0.199 4.199 26 C -0.194 4.194 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.250 0.750 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.611 -6.980 -8.981 11.391 hybrid contribution -0.355 0.336 -1.385 1.469 sum -0.966 -6.644 -10.366 12.351 Atomic orbital electron populations 1.23036 0.81712 1.02040 1.00541 1.87860 1.19352 1.25866 1.94487 1.22867 0.92323 0.83174 0.96867 1.20526 0.90697 0.97720 0.83212 0.89088 1.22234 1.02021 1.00795 0.97531 1.55976 1.46451 1.54974 1.30094 1.01860 0.73393 0.73105 0.72710 1.93552 1.57999 1.86881 1.59335 1.93579 1.85519 1.75096 1.42719 1.57536 1.80000 1.22427 1.22819 1.21262 1.00648 0.93527 0.88716 1.18936 0.93212 0.94978 0.78539 0.93653 1.22351 0.98115 0.99929 1.00655 1.22073 1.05227 1.42881 0.95330 0.91172 1.25486 0.93517 0.95055 1.01889 1.70875 1.38403 1.13165 1.29491 0.84396 0.77096 0.76945 0.77042 1.20967 1.20555 1.20112 1.23550 0.99292 0.99633 0.97308 1.23325 0.97611 1.02169 0.96767 1.23692 0.98674 1.00404 0.96609 0.93581 0.90214 0.93037 0.92030 0.91419 0.91414 0.75003 0.93705 0.93168 0.90030 0.93244 0.92264 0.95580 0.91978 0.89053 0.91078 0.89589 0.91121 0.90884 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.17 101.05 0.93 1.18 16 2 O -0.36 -4.86 9.94 -35.23 -0.35 -5.21 16 3 C 0.09 1.22 1.04 -89.81 -0.09 1.13 16 4 C 0.19 2.68 2.43 -67.93 -0.16 2.51 16 5 H 0.09 1.28 5.95 -51.93 -0.31 0.97 16 6 C -0.17 -2.18 9.28 37.16 0.34 -1.83 16 7 N -1.12 -18.06 5.32 -4.89 -0.03 -18.09 16 8 S 2.78 52.74 6.00 -107.50 -0.65 52.10 16 9 O -0.99 -19.59 16.47 -57.17 -0.94 -20.53 16 10 O -0.98 -21.64 16.70 -57.17 -0.95 -22.59 16 11 N -0.99 -19.08 3.12 -115.85 -0.36 -19.44 16 12 C 0.10 1.75 8.93 59.85 0.53 2.28 16 13 C 0.25 5.52 2.23 -69.09 -0.15 5.37 16 14 H 0.05 1.08 5.46 -51.93 -0.28 0.80 16 15 C -0.15 -3.21 9.06 37.15 0.34 -2.87 16 16 C -0.62 -14.85 7.84 -34.44 -0.27 -15.12 16 17 H 0.07 1.73 5.60 -52.49 -0.29 1.43 16 18 C 0.05 1.27 5.14 -17.82 -0.09 1.18 16 19 N -0.89 -24.50 13.70 55.43 0.76 -23.74 16 20 Si 1.02 23.80 26.55 -169.99 -4.51 19.29 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.14 6.37 56.52 0.36 -5.78 16 24 C -0.16 -1.90 6.88 -25.83 -0.18 -2.08 16 25 C -0.16 -2.10 7.30 -25.83 -0.19 -2.29 16 26 C -0.16 -2.46 6.68 -25.92 -0.17 -2.63 16 27 H 0.05 0.45 5.86 -51.93 -0.30 0.15 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.59 5.85 -51.93 -0.30 0.29 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.94 7.64 -51.93 -0.40 0.55 16 32 H 0.07 0.89 7.64 -51.93 -0.40 0.49 16 33 H 0.42 6.45 8.84 -34.47 -0.30 6.15 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.72 6.17 -51.93 -0.32 0.40 16 36 H 0.08 1.41 6.91 -51.93 -0.36 1.05 16 37 H 0.05 0.99 7.44 -51.93 -0.39 0.60 16 38 H 0.06 1.30 5.79 -51.93 -0.30 1.00 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.27 7.39 8.73 -40.82 -0.36 7.03 16 41 H 0.09 1.03 7.99 -51.93 -0.41 0.62 16 42 H 0.07 0.76 7.48 -51.93 -0.39 0.37 16 43 H 0.09 0.99 4.83 -51.93 -0.25 0.74 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.07 1.24 7.47 -51.93 -0.39 0.85 16 46 H 0.12 2.16 5.79 -51.93 -0.30 1.86 16 LS Contribution 356.49 15.07 5.37 5.37 Total: -1.00 -29.46 356.49 -7.84 -37.29 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -7.01 Total: 8.73 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 0.83 Total: -13.18 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: 0.37 Total: -61.27 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: -2.25 Total: -48.33 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -4.51 Total: 19.29 kcal Atomic # 16 Polarization: 52.74 SS G_CDS: -0.65 Total: 52.10 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.46 -7.84 -37.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416616621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.806 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds