Wall clock time and date at job start Tue Mar 31 2020 12:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42906 * 113.99723 * 2 1 4 4 C 1.52998 * 112.84904 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47282 * 170.33567 * 4 3 2 6 6 C 1.52998 * 109.47502 * 50.32956 * 4 3 2 7 7 N 1.46499 * 109.46902 * 290.32936 * 4 3 2 8 8 S 1.65606 * 120.00304 * 214.99983 * 7 4 3 9 9 O 1.42102 * 106.39648 * 311.46114 * 8 7 4 10 10 O 1.42102 * 106.40380 * 178.54356 * 8 7 4 11 11 N 1.65596 * 107.21344 * 65.00153 * 8 7 4 12 12 C 1.46506 * 119.99952 * 269.99940 * 11 8 7 13 13 C 1.46500 * 120.00275 * 90.00534 * 11 8 7 14 14 H 1.09000 * 109.46738 * 359.97438 * 13 11 8 15 15 C 1.52994 * 109.47343 * 119.99285 * 13 11 8 16 16 C 1.50696 * 109.47099 * 240.00029 * 13 11 8 17 17 H 1.07992 * 120.00088 * 354.25881 * 16 13 11 18 18 C 1.37876 * 119.99760 * 174.26527 * 16 13 11 19 19 N 1.31516 * 119.99873 * 153.79385 * 18 16 13 20 20 Si 1.86802 * 120.00368 * 334.06645 * 18 16 13 21 21 H 1.48493 * 109.47424 * 179.72639 * 20 18 16 22 22 H 1.48502 * 109.46872 * 299.72592 * 20 18 16 23 23 H 1.48501 * 109.47039 * 59.72359 * 20 18 16 24 24 C 1.53776 * 113.61312 * 311.19269 * 3 2 1 25 25 C 1.53957 * 87.02165 * 89.22987 * 24 3 2 26 26 C 1.53781 * 87.10958 * 25.36078 * 25 24 3 27 27 H 1.09007 * 109.46587 * 60.00570 * 1 2 3 28 28 H 1.09003 * 109.46579 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47354 * 300.00398 * 1 2 3 30 30 H 1.09006 * 109.46843 * 59.99804 * 6 4 3 31 31 H 1.08996 * 109.47453 * 180.02562 * 6 4 3 32 32 H 1.09005 * 109.46814 * 300.00360 * 6 4 3 33 33 H 0.97001 * 120.00305 * 35.00625 * 7 4 3 34 34 H 1.08998 * 109.46842 * 270.00325 * 12 11 8 35 35 H 1.08997 * 109.47144 * 30.00564 * 12 11 8 36 36 H 1.09002 * 109.47068 * 150.00412 * 12 11 8 37 37 H 1.09002 * 109.47377 * 52.81918 * 15 13 11 38 38 H 1.09002 * 109.47489 * 172.81798 * 15 13 11 39 39 H 1.09003 * 109.47530 * 292.81449 * 15 13 11 40 40 H 0.96999 * 119.99923 * 355.20856 * 19 18 16 41 41 H 1.09000 * 113.61646 * 203.74959 * 24 3 2 42 42 H 1.09004 * 113.61788 * 334.65259 * 24 3 2 43 43 H 1.08999 * 113.53610 * 270.80862 * 25 24 3 44 44 H 1.09001 * 113.74363 * 139.93903 * 25 24 3 45 45 H 1.08995 * 113.61740 * 220.09031 * 26 25 24 46 46 H 1.09003 * 113.69019 * 89.20059 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5399 1.2749 0.0006 5 1 3.9236 2.2804 -0.1719 6 6 4.0319 0.3438 -1.1093 7 7 4.0180 0.7856 1.2961 8 16 5.4138 1.3940 1.9473 9 8 6.3892 1.3530 0.9148 10 8 5.5840 0.7514 3.2033 11 7 5.1451 2.9951 2.2737 12 6 5.4350 4.0087 1.2564 13 6 4.6175 3.3980 3.5797 14 1 4.4651 2.5136 4.1984 15 6 5.6138 4.3350 4.2652 16 6 3.3036 4.1117 3.3922 17 1 2.9467 4.3334 2.3974 18 6 2.5573 4.4818 4.4908 19 7 1.7305 5.5014 4.4109 20 14 2.7260 3.5398 6.0951 21 1 1.8275 4.1358 7.1161 22 1 2.3531 2.1191 5.8764 23 1 4.1317 3.6154 6.5680 24 6 1.4130 2.2457 -1.0603 25 6 0.3745 2.6522 0.0011 26 6 1.4128 2.2457 1.0602 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.6762 0.7079 -2.0732 31 1 5.1216 0.3216 -1.1085 32 1 3.6482 -0.6618 -0.9366 33 1 3.5170 0.1051 1.7725 34 1 6.4654 4.3474 1.3645 35 1 5.2961 3.5784 0.2647 36 1 4.7593 4.8545 1.3834 37 1 5.8635 5.1552 3.5921 38 1 5.1686 4.7353 5.1761 39 1 6.5192 3.7823 4.5159 40 1 1.6963 6.0359 3.6022 41 1 2.0809 3.0566 -1.3507 42 1 0.9835 1.7231 -1.9150 43 1 -0.5170 2.0250 0.0005 44 1 0.1428 3.7172 0.0031 45 1 0.9833 1.7232 1.9149 46 1 2.0813 3.0559 1.3517 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416616621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:16 Heat of formation + Delta-G solvation = -110.069473 kcal Electronic energy + Delta-G solvation = -28427.505775 eV Core-core repulsion = 24672.686552 eV Total energy + Delta-G solvation = -3754.819223 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.58807 -38.39812 -38.02581 -36.93185 -36.71761 -35.66459 -34.55993 -31.52951 -31.01959 -28.37405 -27.23207 -26.76398 -26.42944 -25.43098 -22.53351 -22.41524 -21.05896 -20.21352 -19.45739 -18.78483 -18.46942 -17.83992 -17.09075 -16.71749 -16.10058 -16.00228 -15.66266 -15.40516 -15.06682 -14.72788 -14.60200 -14.50757 -14.38034 -13.91369 -13.79010 -13.52710 -13.45319 -13.28723 -13.18980 -13.14981 -13.03899 -12.99046 -12.86126 -12.67943 -12.45946 -12.32725 -12.23343 -11.92709 -11.69639 -11.66597 -11.48082 -11.13964 -11.09461 -10.39817 -10.34721 -10.25484 -9.76191 -8.59189 -6.18124 -0.33508 1.49879 1.53249 1.69664 1.93906 2.50276 2.53051 2.74690 3.07735 3.37622 3.53018 3.55033 3.63224 3.90431 3.94213 4.12721 4.35149 4.41333 4.49122 4.51782 4.55268 4.60343 4.66765 4.77936 4.78887 4.80950 4.85382 4.87231 4.93646 4.97467 5.03075 5.06781 5.11373 5.14035 5.21667 5.33182 5.39450 5.45554 5.56957 5.77105 6.07164 6.12057 6.22319 6.30640 6.80759 7.47801 8.73952 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.007222 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.745957 B = 3876.239116 C = 5149.657013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.368 6.368 3 C 0.096 3.904 4 C 0.176 3.824 5 H 0.094 0.906 6 C -0.161 4.161 7 N -1.112 6.112 8 S 2.794 3.206 9 O -0.999 6.999 10 O -1.016 7.016 11 N -0.990 5.990 12 C 0.099 3.901 13 C 0.247 3.753 14 H 0.032 0.968 15 C -0.150 4.150 16 C -0.594 4.594 17 H 0.061 0.939 18 C 0.011 3.989 19 N -0.921 5.921 20 Si 1.038 2.962 21 H -0.289 1.289 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.146 4.146 25 C -0.157 4.157 26 C -0.168 4.168 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.419 0.581 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.040 0.960 40 H 0.261 0.739 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.827 -7.241 -12.350 14.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.287 6.287 3 C 0.055 3.945 4 C 0.069 3.931 5 H 0.112 0.888 6 C -0.220 4.220 7 N -0.872 5.872 8 S 2.803 3.197 9 O -0.982 6.982 10 O -1.001 7.001 11 N -0.831 5.831 12 C -0.046 4.046 13 C 0.142 3.858 14 H 0.050 0.950 15 C -0.210 4.210 16 C -0.633 4.633 17 H 0.079 0.921 18 C -0.192 4.192 19 N -0.556 5.556 20 Si 0.863 3.137 21 H -0.215 1.215 22 H -0.200 1.200 23 H -0.182 1.182 24 C -0.184 4.184 25 C -0.194 4.194 26 C -0.206 4.206 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.254 0.746 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.121 0.879 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.372 -7.860 -10.771 13.339 hybrid contribution -0.443 0.563 -0.911 1.159 sum -0.815 -7.297 -11.682 13.798 Atomic orbital electron populations 1.23213 0.80362 1.03482 1.00862 1.87845 1.20831 1.25496 1.94520 1.22751 0.91832 0.83379 0.96587 1.20800 0.91364 0.98291 0.82606 0.88786 1.22186 1.01340 1.00471 0.97978 1.55780 1.45812 1.54754 1.30855 1.01325 0.73680 0.72660 0.72010 1.93542 1.58675 1.86892 1.59138 1.93531 1.86282 1.75749 1.44499 1.57453 1.79978 1.23247 1.22440 1.21436 1.01152 0.92873 0.89141 1.18761 0.92759 0.94411 0.79919 0.94984 1.22295 0.98265 1.00102 1.00321 1.22169 1.05568 1.40961 0.94558 0.92086 1.26206 0.93647 0.95267 1.04098 1.70954 1.40536 1.14700 1.29369 0.84115 0.77977 0.76439 0.75189 1.21475 1.20003 1.18237 1.23507 0.98535 0.99240 0.97158 1.23345 0.97983 1.02062 0.95976 1.23614 0.99626 1.00233 0.97095 0.91854 0.88358 0.94031 0.89642 0.92355 0.91466 0.74639 0.92409 0.90818 0.90918 0.92261 0.93258 0.94119 0.92953 0.88267 0.88826 0.87927 0.91854 0.93119 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.17 113.37 1.04 1.36 16 2 O -0.37 -9.25 9.94 -148.98 -1.48 -10.73 16 3 C 0.10 2.47 1.04 -10.27 -0.01 2.46 16 4 C 0.18 4.76 2.43 44.99 0.11 4.87 16 5 H 0.09 2.46 5.95 -2.39 -0.01 2.44 16 6 C -0.16 -3.78 9.28 71.98 0.67 -3.11 16 7 N -1.11 -34.97 5.32 -169.40 -0.90 -35.87 16 8 S 2.79 103.33 6.00 -56.49 -0.34 102.99 16 9 O -1.00 -37.70 16.47 -128.00 -2.11 -39.81 16 10 O -1.02 -44.19 16.70 -128.00 -2.14 -46.33 16 11 N -0.99 -37.37 3.12 -520.45 -1.62 -38.99 16 12 C 0.10 3.16 8.93 127.77 1.14 4.30 16 13 C 0.25 10.88 2.23 44.24 0.10 10.98 16 14 H 0.03 1.52 5.46 -2.39 -0.01 1.51 16 15 C -0.15 -6.21 9.06 71.98 0.65 -5.56 16 16 C -0.59 -28.79 7.84 25.60 0.20 -28.59 16 17 H 0.06 3.06 5.60 -2.91 -0.02 3.04 16 18 C 0.01 0.57 5.14 84.65 0.44 1.01 16 19 N -0.92 -51.90 13.70 21.45 0.29 -51.61 16 20 Si 1.04 48.06 26.55 68.60 1.82 49.88 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 22 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.26 -11.12 6.37 99.48 0.63 -10.48 16 24 C -0.15 -3.08 6.88 31.18 0.21 -2.86 16 25 C -0.16 -3.86 7.30 31.18 0.23 -3.63 16 26 C -0.17 -5.27 6.68 31.12 0.21 -5.06 16 27 H 0.06 1.03 5.86 -2.38 -0.01 1.02 16 28 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.04 0.90 5.85 -2.39 -0.01 0.89 16 30 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.06 1.49 7.64 -2.39 -0.02 1.47 16 32 H 0.07 1.59 7.64 -2.38 -0.02 1.57 16 33 H 0.42 12.80 8.84 -96.74 -0.85 11.95 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 1.97 6.17 -2.39 -0.01 1.96 16 36 H 0.07 2.44 6.91 -2.39 -0.02 2.43 16 37 H 0.06 2.29 7.44 -2.39 -0.02 2.27 16 38 H 0.05 2.11 5.79 -2.39 -0.01 2.10 16 39 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.26 14.69 8.73 -92.71 -0.81 13.88 16 41 H 0.10 1.95 7.99 -2.39 -0.02 1.93 16 42 H 0.09 1.60 7.48 -2.38 -0.02 1.58 16 43 H 0.10 2.17 4.83 -2.39 -0.01 2.16 16 44 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.05 1.77 7.47 -2.39 -0.02 1.75 16 46 H 0.09 3.32 5.79 -2.39 -0.01 3.31 16 Total: -1.00 -62.61 356.49 -1.46 -64.07 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: 0.04 Total: 30.23 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: 4.98 Total: -23.84 kcal Atomic # 7 Polarization: -124.24 SS G_CDS: -2.23 Total: -126.47 kcal Atomic # 8 Polarization: -91.14 SS G_CDS: -5.73 Total: -96.87 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 1.82 Total: 49.88 kcal Atomic # 16 Polarization: 103.33 SS G_CDS: -0.34 Total: 102.99 kcal Total: -62.61 -1.46 -64.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416616621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.003 kcal (2) G-P(sol) polarization free energy of solvation -62.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds