Wall clock time and date at job start Tue Mar 31 2020 12:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99596 * 2 1 4 4 C 1.53012 * 112.84694 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.46904 * 173.80170 * 4 3 2 6 6 C 1.53001 * 109.46683 * 293.80156 * 4 3 2 7 7 N 1.46496 * 109.47109 * 53.80049 * 4 3 2 8 8 S 1.65600 * 119.99787 * 145.00020 * 7 4 3 9 9 O 1.42096 * 106.40271 * 311.46100 * 8 7 4 10 10 O 1.42096 * 106.40141 * 178.54128 * 8 7 4 11 11 N 1.65601 * 107.21655 * 65.00202 * 8 7 4 12 12 C 1.46502 * 119.99959 * 269.99721 * 11 8 7 13 13 C 1.46500 * 120.00005 * 90.00279 * 11 8 7 14 14 H 1.09000 * 109.46875 * 359.97438 * 13 11 8 15 15 C 1.52994 * 109.47287 * 120.00089 * 13 11 8 16 16 C 1.50704 * 109.46877 * 239.99715 * 13 11 8 17 17 H 1.08007 * 119.99693 * 354.47151 * 16 13 11 18 18 C 1.37876 * 119.99996 * 174.47068 * 16 13 11 19 19 N 1.31511 * 119.99706 * 164.54186 * 18 16 13 20 20 Si 1.86798 * 120.00008 * 344.81432 * 18 16 13 21 21 H 1.48497 * 109.47233 * 269.72657 * 20 18 16 22 22 H 1.48498 * 109.47042 * 29.72561 * 20 18 16 23 23 H 1.48504 * 109.47038 * 149.72314 * 20 18 16 24 24 C 1.53776 * 113.69333 * 311.26333 * 3 2 1 25 25 C 1.53777 * 87.08199 * 89.13178 * 24 3 2 26 26 C 1.53776 * 87.08055 * 25.43350 * 25 24 3 27 27 H 1.09001 * 109.46892 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47451 * 300.00333 * 1 2 3 29 29 H 1.08999 * 109.46842 * 60.00483 * 1 2 3 30 30 H 1.09001 * 109.47125 * 60.00210 * 6 4 3 31 31 H 1.09002 * 109.46684 * 179.97438 * 6 4 3 32 32 H 1.08996 * 109.47286 * 299.99979 * 6 4 3 33 33 H 0.97004 * 120.00084 * 325.00235 * 7 4 3 34 34 H 1.09000 * 109.47237 * 270.00592 * 12 11 8 35 35 H 1.09005 * 109.47030 * 29.99886 * 12 11 8 36 36 H 1.08997 * 109.47222 * 149.99972 * 12 11 8 37 37 H 1.09002 * 109.47509 * 173.77642 * 15 13 11 38 38 H 1.09007 * 109.46856 * 293.77034 * 15 13 11 39 39 H 1.08997 * 109.47564 * 53.76801 * 15 13 11 40 40 H 0.96998 * 120.00113 * 355.18356 * 19 18 16 41 41 H 1.09000 * 113.62071 * 203.68062 * 24 3 2 42 42 H 1.09001 * 113.61462 * 334.58014 * 24 3 2 43 43 H 1.09009 * 113.61512 * 270.88665 * 25 24 3 44 44 H 1.09001 * 113.61859 * 139.98487 * 25 24 3 45 45 H 1.09005 * 113.61747 * 220.01910 * 26 25 24 46 46 H 1.09001 * 113.61765 * 89.11648 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5400 1.2748 0.0006 5 1 3.9237 2.2889 -0.1103 6 6 4.0375 0.6828 1.3208 7 7 4.0123 0.4493 -1.1136 8 16 5.4046 0.8554 -1.9128 9 8 5.3033 2.2396 -2.2175 10 8 5.6062 -0.1452 -2.9014 11 7 6.6513 0.7041 -0.8334 12 6 7.0491 1.8479 -0.0087 13 6 7.3566 -0.5733 -0.7031 14 1 6.9235 -1.2992 -1.3913 15 6 8.8368 -0.3749 -1.0354 16 6 7.2225 -1.0793 0.7101 17 1 6.7451 -0.4661 1.4602 18 6 7.7093 -2.3249 1.0454 19 7 7.8732 -2.6483 2.3096 20 14 8.1430 -3.5504 -0.2960 21 1 6.9531 -4.3807 -0.6116 22 1 8.5733 -2.8187 -1.5145 23 1 9.2477 -4.4258 0.1717 24 6 1.4130 2.2477 -1.0585 25 6 0.3746 2.6522 0.0011 26 6 1.4129 2.2458 1.0601 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.6537 -0.3314 1.4317 31 1 5.1273 0.6605 1.3211 32 1 3.6861 1.2970 2.1498 33 1 3.5094 -0.3352 -1.3832 34 1 7.8125 2.4244 -0.5311 35 1 6.1810 2.4801 0.1785 36 1 7.4494 1.4901 0.9398 37 1 9.3816 -1.2969 -0.8325 38 1 8.9410 -0.1157 -2.0891 39 1 9.2424 0.4294 -0.4217 40 1 7.7185 -1.9880 3.0031 41 1 2.0809 3.0592 -1.3474 42 1 0.9835 1.7268 -1.9142 43 1 -0.5170 2.0250 0.0005 44 1 0.1438 3.7175 0.0021 45 1 0.9833 1.7233 1.9149 46 1 2.0808 3.0567 1.3506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416616625.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:20 Heat of formation + Delta-G solvation = -86.928031 kcal Electronic energy + Delta-G solvation = -27939.461349 eV Core-core repulsion = 24185.645614 eV Total energy + Delta-G solvation = -3753.815735 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.74691 -36.79411 -36.42151 -35.53601 -35.33106 -34.80870 -32.56618 -29.90228 -29.68180 -27.57124 -25.88415 -25.67403 -24.69036 -24.38099 -21.51684 -20.68221 -20.10216 -18.73899 -17.59625 -17.30490 -17.06908 -16.51564 -16.09354 -15.35777 -15.21926 -14.85784 -14.10533 -13.75601 -13.65570 -13.61392 -13.49200 -13.26468 -12.91757 -12.60789 -12.34343 -12.22027 -12.13825 -11.99399 -11.77120 -11.70095 -11.65700 -11.53053 -11.51515 -11.28323 -11.20531 -10.90544 -10.72786 -10.58655 -10.48163 -10.18125 -10.05649 -9.60306 -9.51361 -9.12954 -9.08134 -8.41397 -8.05553 -6.46459 -4.12530 1.19298 3.35373 3.43102 3.47624 3.59041 3.62131 4.06264 4.31432 4.39261 4.47643 4.54051 4.65618 4.94008 5.05217 5.18697 5.20022 5.22453 5.37735 5.45750 5.47368 5.54103 5.57133 5.59922 5.73093 5.77047 5.77553 5.86343 6.04678 6.09645 6.13906 6.24644 6.36241 6.43614 6.49932 6.59139 6.70215 6.80290 6.99453 7.15710 7.30926 7.37156 7.57361 7.97090 8.35055 8.86947 9.55057 10.89805 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016150 B = 0.005133 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.308984 B = 5453.383683 C = 6087.933540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.350 6.350 3 C 0.096 3.904 4 C 0.182 3.818 5 H 0.094 0.906 6 C -0.175 4.175 7 N -1.116 6.116 8 S 2.782 3.218 9 O -0.998 6.998 10 O -0.985 6.985 11 N -0.985 5.985 12 C 0.105 3.895 13 C 0.245 3.755 14 H 0.049 0.951 15 C -0.151 4.151 16 C -0.605 4.605 17 H 0.070 0.930 18 C 0.038 3.962 19 N -0.902 5.902 20 Si 1.029 2.971 21 H -0.284 1.284 22 H -0.267 1.267 23 H -0.285 1.285 24 C -0.166 4.166 25 C -0.161 4.161 26 C -0.161 4.161 27 H 0.083 0.917 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.418 0.582 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.026 0.974 39 H 0.049 0.951 40 H 0.268 0.732 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.022 9.937 -2.687 16.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.268 6.268 3 C 0.054 3.946 4 C 0.074 3.926 5 H 0.112 0.888 6 C -0.233 4.233 7 N -0.874 5.874 8 S 2.791 3.209 9 O -0.981 6.981 10 O -0.969 6.969 11 N -0.827 5.827 12 C -0.041 4.041 13 C 0.140 3.860 14 H 0.067 0.933 15 C -0.211 4.211 16 C -0.644 4.644 17 H 0.088 0.912 18 C -0.168 4.168 19 N -0.536 5.536 20 Si 0.857 3.143 21 H -0.211 1.211 22 H -0.193 1.193 23 H -0.211 1.211 24 C -0.203 4.203 25 C -0.198 4.198 26 C -0.199 4.199 27 H 0.102 0.898 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.252 0.748 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.206 8.660 -3.811 15.444 hybrid contribution -1.044 1.271 0.712 1.792 sum -13.251 9.931 -3.099 16.847 Atomic orbital electron populations 1.23059 0.81767 1.02489 1.00127 1.87951 1.19239 1.25290 1.94284 1.22790 0.92865 0.83274 0.95677 1.20632 0.90173 0.94345 0.87474 0.88782 1.22400 1.03781 1.02184 0.94980 1.55898 1.43564 1.40262 1.47702 1.01773 0.72681 0.72979 0.73492 1.93539 1.86766 1.34309 1.83515 1.93577 1.85244 1.60694 1.57384 1.57495 1.48631 1.19574 1.56954 1.21239 0.99247 0.86895 0.96744 1.19029 0.88829 0.79493 0.98654 0.93321 1.22406 0.99148 1.01428 0.98101 1.22243 1.43301 1.04693 0.94171 0.91242 1.25591 0.93374 0.97804 1.00011 1.70817 1.44206 1.38387 1.00187 0.84325 0.77517 0.76428 0.76071 1.21051 1.19272 1.21098 1.23611 0.98872 1.00131 0.97733 1.23322 0.97752 1.02057 0.96664 1.23545 0.98822 0.99857 0.97690 0.89833 0.93444 0.93475 0.91130 0.89836 0.92564 0.74788 0.93788 0.93151 0.90010 0.92322 0.95493 0.93231 0.92169 0.88559 0.90792 0.89082 0.91087 0.90531 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.17 101.05 0.93 1.14 16 2 O -0.35 -4.60 9.97 -35.23 -0.35 -4.95 16 3 C 0.10 1.18 1.06 -89.81 -0.10 1.08 16 4 C 0.18 2.61 2.52 -67.93 -0.17 2.43 16 5 H 0.09 1.28 6.97 -51.93 -0.36 0.92 16 6 C -0.17 -2.68 9.30 37.16 0.35 -2.34 16 7 N -1.12 -18.28 5.52 -4.89 -0.03 -18.31 16 8 S 2.78 53.29 6.07 -107.50 -0.65 52.64 16 9 O -1.00 -19.63 16.55 -57.18 -0.95 -20.58 16 10 O -0.98 -21.81 16.70 -57.18 -0.95 -22.76 16 11 N -0.98 -19.51 2.79 -115.85 -0.32 -19.83 16 12 C 0.11 1.79 8.02 59.85 0.48 2.27 16 13 C 0.24 5.60 2.17 -69.08 -0.15 5.45 16 14 H 0.05 1.19 5.54 -51.93 -0.29 0.90 16 15 C -0.15 -3.25 8.57 37.15 0.32 -2.94 16 16 C -0.61 -15.32 8.36 -34.44 -0.29 -15.60 16 17 H 0.07 1.82 5.79 -52.48 -0.30 1.51 16 18 C 0.04 1.04 5.33 -17.82 -0.09 0.94 16 19 N -0.90 -26.13 13.70 55.43 0.76 -25.37 16 20 Si 1.03 24.46 26.17 -169.99 -4.45 20.01 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -5.94 5.53 56.52 0.31 -5.63 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 24 C -0.17 -1.82 6.89 -25.92 -0.18 -2.00 16 25 C -0.16 -1.42 7.30 -25.92 -0.19 -1.61 16 26 C -0.16 -1.60 6.15 -25.92 -0.16 -1.76 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.40 5.85 -51.93 -0.30 0.09 16 29 H 0.05 0.40 5.86 -51.93 -0.30 0.10 16 30 H 0.07 1.21 8.01 -51.93 -0.42 0.79 16 31 H 0.08 1.46 4.99 -51.93 -0.26 1.20 16 32 H 0.06 0.73 7.60 -51.93 -0.39 0.33 16 33 H 0.42 6.64 8.34 -34.47 -0.29 6.36 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.74 7.35 -51.93 -0.38 0.36 16 36 H 0.08 1.45 6.92 -51.93 -0.36 1.10 16 37 H 0.06 1.28 5.06 -51.93 -0.26 1.02 16 38 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 39 H 0.05 1.00 7.47 -51.93 -0.39 0.61 16 40 H 0.27 7.70 8.73 -40.82 -0.36 7.34 16 41 H 0.10 1.09 8.04 -51.93 -0.42 0.67 16 42 H 0.07 0.81 7.48 -51.93 -0.39 0.42 16 43 H 0.09 0.71 4.83 -51.92 -0.25 0.46 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.74 7.48 -51.93 -0.39 0.35 16 46 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 LS Contribution 355.05 15.07 5.35 5.35 Total: -1.00 -31.27 355.05 -7.96 -39.23 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -7.11 Total: 7.50 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 0.74 Total: -12.92 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: 0.41 Total: -63.51 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -2.25 Total: -48.29 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -4.45 Total: 20.01 kcal Atomic # 16 Polarization: 53.29 SS G_CDS: -0.65 Total: 52.64 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.27 -7.96 -39.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416616625.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.699 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds