Wall clock time and date at job start Tue Mar 31 2020 13:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.46804 * 2 1 4 4 C 1.46496 * 120.00057 * 274.99831 * 3 2 1 5 5 C 1.50699 * 109.47003 * 292.84390 * 4 3 2 6 6 H 1.08001 * 120.00153 * 4.81412 * 5 4 3 7 7 C 1.37884 * 119.99846 * 184.81248 * 5 4 3 8 8 N 1.31506 * 120.00140 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99759 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47030 * 90.00088 * 9 7 5 11 11 H 1.48502 * 109.46909 * 209.99772 * 9 7 5 12 12 H 1.48498 * 109.46954 * 330.00065 * 9 7 5 13 13 S 1.65604 * 120.00110 * 95.00048 * 3 2 1 14 14 O 1.42102 * 106.40012 * 148.42234 * 13 3 2 15 15 O 1.42100 * 106.40111 * 15.49728 * 13 3 2 16 16 N 1.65603 * 107.21547 * 261.95946 * 13 3 2 17 17 C 1.46504 * 120.00052 * 68.07294 * 16 13 3 18 18 H 1.09001 * 109.46773 * 4.18828 * 17 16 13 19 19 C 1.52994 * 109.47307 * 244.18833 * 17 16 13 20 20 C 1.52995 * 109.46916 * 124.18458 * 17 16 13 21 21 O 1.42899 * 112.85063 * 53.80728 * 20 17 16 22 22 C 1.42904 * 114.00363 * 179.97438 * 21 20 17 23 23 C 1.53790 * 113.61693 * 282.49962 * 20 17 16 24 24 C 1.53783 * 87.08031 * 220.02040 * 23 20 17 25 25 C 1.53784 * 87.08380 * 25.43156 * 24 23 20 26 26 H 1.09008 * 109.46683 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47449 * 299.99735 * 1 2 3 28 28 H 1.09004 * 109.47057 * 60.00621 * 1 2 3 29 29 H 1.08998 * 109.47008 * 239.99655 * 2 1 3 30 30 H 1.08999 * 109.46770 * 119.99759 * 2 1 3 31 31 H 1.09003 * 109.46991 * 52.84237 * 4 3 2 32 32 H 1.08996 * 109.47813 * 172.84350 * 4 3 2 33 33 H 0.97002 * 119.99905 * 179.97438 * 8 7 5 34 34 H 0.96998 * 119.99965 * 247.80089 * 16 13 3 35 35 H 1.08995 * 109.47474 * 63.21217 * 19 17 16 36 36 H 1.08997 * 109.46830 * 183.21399 * 19 17 16 37 37 H 1.09002 * 109.46809 * 303.21238 * 19 17 16 38 38 H 1.08996 * 109.47186 * 179.97438 * 22 21 20 39 39 H 1.08991 * 109.47161 * 300.00558 * 22 21 20 40 40 H 1.09006 * 109.46736 * 60.00274 * 22 21 20 41 41 H 1.08998 * 113.61258 * 334.56711 * 23 20 17 42 42 H 1.08993 * 113.61179 * 105.47234 * 23 20 17 43 43 H 1.09010 * 113.61401 * 270.88356 * 24 23 20 44 44 H 1.08995 * 113.61636 * 139.98170 * 24 23 20 45 45 H 1.09000 * 113.61353 * 220.02229 * 25 24 23 46 46 H 1.08999 * 113.61234 * 89.11316 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.2541 1.4810 -2.0860 6 1 3.7396 0.5801 -1.7410 7 6 3.6371 2.0569 -3.2789 8 7 3.0456 3.1536 -3.6993 9 14 4.9961 1.2792 -4.2977 10 1 4.4057 0.3006 -5.2458 11 1 5.7109 2.3357 -5.0580 12 1 5.9518 0.5833 -3.3991 13 16 2.4121 2.1203 1.4287 14 8 3.4655 3.0274 1.1341 15 8 2.5245 1.0867 2.3974 16 7 1.1123 3.0429 1.8779 17 6 -0.1389 2.3976 2.2833 18 1 -0.0019 1.3163 2.2978 19 6 -1.2443 2.7584 1.2890 20 6 -0.5323 2.8806 3.6807 21 8 -0.5932 4.3049 3.7788 22 6 -0.9593 4.7833 5.0747 23 6 0.2723 2.2172 4.8110 24 6 -1.0425 2.1593 5.6064 25 6 -1.7708 2.1703 4.2520 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.2190 2.0632 -1.8151 32 1 2.4088 3.1493 -1.0584 33 1 3.3153 3.5590 -4.5383 34 1 1.1807 4.0105 1.8763 35 1 -0.9906 2.3644 0.3049 36 1 -2.1876 2.3253 1.6216 37 1 -1.3422 3.8425 1.2322 38 1 -0.9826 5.8729 5.0665 39 1 -1.9451 4.4003 5.3382 40 1 -0.2287 4.4413 5.8079 41 1 0.6671 1.2359 4.5481 42 1 1.0227 2.8715 5.2549 43 1 -1.2279 3.0486 6.2091 44 1 -1.1742 1.2330 6.1655 45 1 -2.6698 2.7867 4.2447 46 1 -1.9345 1.1761 3.8363 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416623707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:43 Heat of formation + Delta-G solvation = -91.166621 kcal Electronic energy + Delta-G solvation = -27674.685847 eV Core-core repulsion = 23920.686313 eV Total energy + Delta-G solvation = -3753.999534 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.76393 -36.72306 -36.11077 -35.57088 -35.15273 -34.82536 -32.62949 -30.19019 -29.63867 -27.64653 -26.59925 -25.84442 -24.52972 -23.20094 -21.67631 -21.57488 -20.11657 -18.67358 -17.38524 -17.01215 -16.58491 -16.34122 -15.99313 -15.45222 -15.23251 -15.06204 -14.32869 -14.16158 -13.71788 -13.63123 -13.57799 -13.12961 -12.88542 -12.66725 -12.40582 -12.23272 -12.09760 -12.01434 -11.84120 -11.66224 -11.46588 -11.41232 -11.32087 -11.25810 -10.99223 -10.91614 -10.80757 -10.70950 -10.53044 -10.38486 -10.24517 -9.98043 -9.66004 -9.51667 -9.12709 -8.46089 -8.00406 -6.05345 -4.09090 1.28059 3.31434 3.38326 3.42184 3.44880 3.63894 4.12585 4.32355 4.40254 4.44816 4.54428 4.67065 4.97751 5.03491 5.13295 5.17186 5.29654 5.32201 5.37611 5.44040 5.46890 5.53348 5.59345 5.64926 5.72233 5.75827 5.77733 5.78262 5.90124 5.95381 6.00849 6.11913 6.23305 6.35988 6.41958 6.66108 6.73136 7.13068 7.24990 7.35522 7.47019 7.68873 7.92802 8.24532 8.93738 9.55823 11.03575 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024015 B = 0.003953 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.646448 B = 7082.097518 C = 7162.536770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.116 3.884 3 N -0.990 5.990 4 C 0.256 3.744 5 C -0.528 4.528 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 S 2.777 3.223 14 O -0.972 6.972 15 O -0.999 6.999 16 N -1.120 6.120 17 C 0.179 3.821 18 H 0.103 0.897 19 C -0.168 4.168 20 C 0.090 3.910 21 O -0.352 6.352 22 C 0.022 3.978 23 C -0.166 4.166 24 C -0.162 4.162 25 C -0.162 4.162 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.026 0.974 32 H 0.044 0.956 33 H 0.263 0.737 34 H 0.417 0.583 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.790 -1.512 15.957 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.010 4.010 3 N -0.832 5.832 4 C 0.134 3.866 5 C -0.568 4.568 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 S 2.785 3.215 14 O -0.956 6.956 15 O -0.982 6.982 16 N -0.878 5.878 17 C 0.071 3.929 18 H 0.121 0.879 19 C -0.227 4.227 20 C 0.049 3.951 21 O -0.270 6.270 22 C -0.075 4.075 23 C -0.204 4.204 24 C -0.199 4.199 25 C -0.200 4.200 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.251 0.749 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.120 0.880 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.914 -1.531 16.117 20.101 hybrid contribution 0.303 0.050 -0.619 0.691 sum -11.612 -1.480 15.498 19.422 Atomic orbital electron populations 1.22504 0.97567 1.01600 1.02197 1.21139 0.93005 0.83339 1.03550 1.57708 1.81011 1.21422 1.23076 1.19031 0.96969 0.91709 0.78886 1.21433 1.19389 1.11161 1.04774 0.91987 1.24949 0.96666 0.94854 0.97620 1.69919 1.42042 1.19365 1.21955 0.86518 0.82042 0.78901 0.80084 1.20652 1.21108 1.19774 1.02018 0.73287 0.73104 0.73071 1.93629 1.52089 1.65088 1.84768 1.93505 1.86363 1.58044 1.60326 1.56121 1.28086 1.20143 1.83435 1.20696 0.84804 0.96729 0.90695 0.87940 1.22285 0.97476 1.03236 0.99725 1.22945 0.95472 0.81654 0.95079 1.87910 1.89452 1.18972 1.30636 1.23054 0.98976 0.99641 0.85795 1.23630 0.96974 1.02825 0.96922 1.23327 0.96889 1.02923 0.96739 1.23552 0.97864 1.01859 0.96713 0.92232 0.92924 0.91685 0.89405 0.90728 0.95599 0.93786 0.92697 0.74930 0.90921 0.91947 0.91378 0.89932 0.93480 0.93403 0.88008 0.90883 0.89177 0.91067 0.90673 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 9.40 37.16 0.35 -2.13 16 2 C 0.12 2.01 6.25 -4.04 -0.03 1.98 16 3 N -0.99 -20.24 2.92 -115.67 -0.34 -20.57 16 4 C 0.26 6.35 5.46 -5.20 -0.03 6.32 16 5 C -0.53 -14.59 8.74 -34.44 -0.30 -14.89 16 6 H 0.06 1.69 7.59 -52.49 -0.40 1.29 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 9 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 S 2.78 54.97 6.01 -107.50 -0.65 54.32 16 14 O -0.97 -23.58 17.08 -57.17 -0.98 -24.56 16 15 O -1.00 -19.94 15.94 -57.17 -0.91 -20.85 16 16 N -1.12 -17.54 5.38 -4.89 -0.03 -17.57 16 17 C 0.18 2.33 2.05 -67.93 -0.14 2.19 16 18 H 0.10 1.31 5.32 -51.93 -0.28 1.04 16 19 C -0.17 -2.00 8.50 37.15 0.32 -1.68 16 20 C 0.09 1.05 1.08 -89.80 -0.10 0.95 16 21 O -0.35 -4.22 10.25 -35.23 -0.36 -4.58 16 22 C 0.02 0.19 9.17 101.05 0.93 1.12 16 23 C -0.17 -1.90 6.89 -25.91 -0.18 -2.08 16 24 C -0.16 -1.41 7.30 -25.92 -0.19 -1.59 16 25 C -0.16 -1.46 6.10 -25.91 -0.16 -1.62 16 26 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.05 0.65 3.58 -51.93 -0.19 0.46 16 28 H 0.06 0.95 7.98 -51.93 -0.41 0.54 16 29 H 0.09 1.59 7.43 -51.93 -0.39 1.21 16 30 H 0.07 1.22 6.87 -51.93 -0.36 0.86 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.04 1.19 7.30 -51.93 -0.38 0.81 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.42 6.28 8.70 -34.47 -0.30 5.98 16 35 H 0.07 0.94 6.63 -51.93 -0.34 0.59 16 36 H 0.06 0.60 7.51 -51.93 -0.39 0.21 16 37 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.35 5.85 -51.93 -0.30 0.05 16 40 H 0.05 0.40 5.86 -51.93 -0.30 0.10 16 41 H 0.10 1.27 8.03 -51.93 -0.42 0.85 16 42 H 0.07 0.87 7.48 -51.93 -0.39 0.48 16 43 H 0.09 0.68 4.83 -51.92 -0.25 0.43 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.62 7.47 -51.93 -0.39 0.24 16 46 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 363.63 15.07 5.48 5.48 Total: -1.00 -33.11 363.63 -8.84 -41.95 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.15 Total: 4.90 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 0.38 Total: -9.80 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: 0.37 Total: -63.47 kcal Atomic # 8 Polarization: -47.74 SS G_CDS: -2.25 Total: -49.99 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 54.97 SS G_CDS: -0.65 Total: 54.32 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.11 -8.84 -41.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416623707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.220 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds