Wall clock time and date at job start Tue Mar 31 2020 13:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46855 * 2 1 4 4 C 1.46501 * 120.00034 * 283.15146 * 3 2 1 5 5 C 1.50700 * 109.47293 * 275.00065 * 4 3 2 6 6 H 1.08000 * 119.99884 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00420 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99972 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00345 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46936 * 89.99916 * 9 7 5 11 11 H 1.48496 * 109.47141 * 210.00218 * 9 7 5 12 12 H 1.48503 * 109.46702 * 329.99943 * 9 7 5 13 13 S 1.65602 * 120.00366 * 103.15082 * 3 2 1 14 14 O 1.42094 * 106.39887 * 327.10876 * 13 3 2 15 15 O 1.42101 * 106.40310 * 194.18612 * 13 3 2 16 16 N 1.65604 * 107.21619 * 80.64452 * 13 3 2 17 17 C 1.46503 * 119.99598 * 66.37475 * 16 13 3 18 18 H 1.08997 * 109.47577 * 334.42035 * 17 16 13 19 19 C 1.53003 * 109.47173 * 94.41783 * 17 16 13 20 20 C 1.52997 * 109.47132 * 214.41563 * 17 16 13 21 21 O 1.42896 * 112.85368 * 290.33766 * 20 17 16 22 22 C 1.42901 * 114.00545 * 179.97438 * 21 20 17 23 23 C 1.53782 * 113.61691 * 159.13782 * 20 17 16 24 24 C 1.53952 * 87.02115 * 220.05110 * 23 20 17 25 25 C 1.53778 * 87.11111 * 25.36117 * 24 23 20 26 26 H 1.09003 * 109.46839 * 65.02416 * 1 2 3 27 27 H 1.08999 * 109.46729 * 185.01497 * 1 2 3 28 28 H 1.08992 * 109.47258 * 305.02123 * 1 2 3 29 29 H 1.09005 * 109.47300 * 240.00058 * 2 1 3 30 30 H 1.08998 * 109.47040 * 119.99836 * 2 1 3 31 31 H 1.09000 * 109.47450 * 34.99765 * 4 3 2 32 32 H 1.08994 * 109.47512 * 155.00056 * 4 3 2 33 33 H 0.97002 * 120.00347 * 179.97438 * 8 7 5 34 34 H 0.96994 * 120.00272 * 246.37843 * 16 13 3 35 35 H 1.08997 * 109.46982 * 300.00255 * 19 17 16 36 36 H 1.09005 * 109.46947 * 59.99544 * 19 17 16 37 37 H 1.08998 * 109.47638 * 179.97438 * 19 17 16 38 38 H 1.08991 * 109.47375 * 179.97438 * 22 21 20 39 39 H 1.08994 * 109.47052 * 300.00325 * 22 21 20 40 40 H 1.09007 * 109.46468 * 60.00222 * 22 21 20 41 41 H 1.09000 * 113.61418 * 334.56926 * 23 20 17 42 42 H 1.09003 * 113.61410 * 105.46910 * 23 20 17 43 43 H 1.08996 * 113.53849 * 270.81075 * 24 23 20 44 44 H 1.09004 * 113.74075 * 139.94360 * 24 23 20 45 45 H 1.09003 * 113.61637 * 220.08457 * 25 24 23 46 46 H 1.09006 * 113.61605 * 89.18766 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9903 2.1681 -1.2355 5 6 3.2311 1.8821 -2.0414 6 1 3.9668 1.1837 -1.6707 7 6 3.4267 2.5112 -3.2526 8 7 2.5301 3.3604 -3.7049 9 14 4.9644 2.1561 -4.2520 10 1 4.7073 1.0156 -5.1676 11 1 5.3265 3.3571 -5.0468 12 1 6.0819 1.8134 -3.3360 13 16 2.6019 2.0532 1.3965 14 8 1.8561 1.4783 2.4606 15 8 2.6763 3.4537 1.1674 16 7 4.1610 1.5259 1.5799 17 6 5.1928 1.9451 0.6281 18 1 4.7282 2.1897 -0.3271 19 6 5.9185 3.1772 1.1725 20 6 6.1968 0.8077 0.4305 21 8 7.0063 0.5752 1.5849 22 6 7.9532 -0.4834 1.4274 23 6 7.0024 0.9169 -0.8748 24 6 6.8426 -0.6086 -1.0068 25 6 5.5721 -0.4713 -0.1514 26 1 -0.3633 0.4339 -0.9316 27 1 -0.3633 -1.0237 0.0898 28 1 -0.3633 0.5897 0.8415 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.1089 1.8991 -1.8177 32 1 1.9533 3.2293 -0.9896 33 1 2.6679 3.8033 -4.5568 34 1 4.3910 0.9394 2.3175 35 1 5.2032 3.9875 1.3133 36 1 6.3831 2.9326 2.1277 37 1 6.6865 3.4889 0.4646 38 1 8.5282 -0.5963 2.3464 39 1 7.4264 -1.4128 1.2114 40 1 8.6275 -0.2480 0.6039 41 1 6.4921 1.4786 -1.6572 42 1 8.0335 1.2376 -0.7261 43 1 7.6377 -1.1733 -0.5200 44 1 6.6488 -0.9430 -2.0260 45 1 5.4500 -1.2698 0.5805 46 1 4.6698 -0.2898 -0.7356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416623713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:46 Heat of formation + Delta-G solvation = -93.738482 kcal Electronic energy + Delta-G solvation = -28565.885273 eV Core-core repulsion = 24811.774215 eV Total energy + Delta-G solvation = -3754.111058 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.45394 -36.60208 -36.08171 -35.34205 -35.11375 -34.49785 -32.76121 -29.91313 -29.62028 -27.34380 -26.69426 -25.50443 -24.28181 -23.24238 -21.64544 -21.17718 -19.88720 -18.67554 -17.21239 -16.83143 -16.65388 -16.22175 -15.83359 -15.38792 -15.02683 -14.80858 -14.37640 -13.81205 -13.48512 -13.40350 -13.29261 -13.10657 -12.86958 -12.40182 -12.24261 -12.14394 -12.04500 -11.83639 -11.76608 -11.68491 -11.39183 -11.23735 -11.22023 -11.11394 -11.01049 -10.78329 -10.61240 -10.60288 -10.49733 -10.21141 -10.03558 -9.79669 -9.59514 -9.25361 -8.91413 -8.54472 -8.06157 -6.17158 -4.24207 1.36874 3.16827 3.21627 3.27667 3.57990 3.78976 4.25057 4.28581 4.67505 4.73757 4.91757 5.01422 5.14087 5.17558 5.31328 5.35121 5.41161 5.52726 5.60662 5.73014 5.79477 5.80958 5.83161 5.90977 6.00789 6.03323 6.08174 6.12037 6.15377 6.22817 6.31809 6.35532 6.50205 6.61873 6.69290 6.74847 6.76597 7.34210 7.37260 7.42177 7.52609 7.69729 7.81871 8.10382 8.79633 9.40906 10.90481 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009706 B = 0.008631 C = 0.005821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.996217 B = 3243.430276 C = 4809.175088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.132 3.868 3 N -0.993 5.993 4 C 0.243 3.757 5 C -0.546 4.546 6 H 0.069 0.931 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.880 3.120 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.258 1.258 13 S 2.782 3.218 14 O -1.003 7.003 15 O -0.976 6.976 16 N -1.121 6.121 17 C 0.164 3.836 18 H 0.137 0.863 19 C -0.164 4.164 20 C 0.095 3.905 21 O -0.358 6.358 22 C 0.023 3.977 23 C -0.171 4.171 24 C -0.162 4.162 25 C -0.161 4.161 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.052 0.948 33 H 0.265 0.735 34 H 0.408 0.592 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.110 0.890 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.428 -8.420 6.367 12.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.005 3.995 3 N -0.835 5.835 4 C 0.121 3.879 5 C -0.585 4.585 6 H 0.087 0.913 7 C -0.135 4.135 8 N -0.521 5.521 9 Si 0.708 3.292 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.183 1.183 13 S 2.790 3.210 14 O -0.987 6.987 15 O -0.959 6.959 16 N -0.878 5.878 17 C 0.057 3.943 18 H 0.154 0.846 19 C -0.223 4.223 20 C 0.054 3.946 21 O -0.276 6.276 22 C -0.073 4.073 23 C -0.209 4.209 24 C -0.199 4.199 25 C -0.199 4.199 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.240 0.760 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.128 0.872 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.823 -7.444 6.812 12.180 hybrid contribution 1.301 -0.960 -0.957 1.879 sum 8.123 -8.404 5.855 13.073 Atomic orbital electron populations 1.22151 0.96820 1.01117 1.02510 1.20943 0.93994 0.82919 1.01631 1.57753 1.76096 1.22135 1.27536 1.19204 0.97811 0.91282 0.79638 1.21616 1.06166 1.26164 1.04550 0.91280 1.24938 0.96469 0.94740 0.97388 1.69924 1.34498 1.27303 1.20366 0.86859 0.83707 0.77966 0.80666 1.20708 1.21182 1.18344 1.01853 0.72630 0.73798 0.72681 1.93545 1.69911 1.79954 1.55315 1.93581 1.86399 1.30288 1.85631 1.56005 1.26727 1.66092 1.38955 1.21136 0.87071 0.91464 0.94605 0.84596 1.22177 1.00797 0.97918 1.01405 1.22836 0.91148 0.95414 0.85233 1.87892 1.50176 1.53462 1.36099 1.23002 0.92191 0.90565 1.01574 1.23851 1.01037 0.97187 0.98791 1.23311 0.98604 0.96856 1.01096 1.23611 0.99148 0.97703 0.99431 0.92015 0.92594 0.92649 0.90676 0.92024 0.94344 0.92983 0.92531 0.75986 0.91265 0.92251 0.92150 0.90385 0.93505 0.93550 0.87159 0.91265 0.89637 0.91187 0.91396 0.87322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.09 37.16 0.38 -2.22 16 2 C 0.13 2.19 6.20 -4.04 -0.03 2.16 16 3 N -0.99 -19.53 2.85 -115.66 -0.33 -19.86 16 4 C 0.24 5.69 5.34 -5.19 -0.03 5.66 16 5 C -0.55 -12.99 7.61 -34.44 -0.26 -13.25 16 6 H 0.07 1.51 4.68 -52.49 -0.25 1.27 16 7 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.88 -24.11 13.29 55.43 0.74 -23.37 16 9 Si 0.88 18.96 29.52 -169.99 -5.02 13.95 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.26 -5.04 4.71 56.52 0.27 -4.78 16 13 S 2.78 54.98 5.97 -107.50 -0.64 54.34 16 14 O -1.00 -20.80 17.31 -57.17 -0.99 -21.79 16 15 O -0.98 -22.58 15.73 -57.17 -0.90 -23.47 16 16 N -1.12 -18.71 5.32 -4.89 -0.03 -18.73 16 17 C 0.16 2.81 2.38 -67.93 -0.16 2.65 16 18 H 0.14 2.68 4.45 -51.93 -0.23 2.45 16 19 C -0.16 -2.72 9.28 37.16 0.34 -2.37 16 20 C 0.09 1.41 1.03 -89.81 -0.09 1.32 16 21 O -0.36 -5.01 9.94 -35.23 -0.35 -5.36 16 22 C 0.02 0.25 9.17 101.05 0.93 1.17 16 23 C -0.17 -2.51 6.88 -25.83 -0.18 -2.69 16 24 C -0.16 -2.09 7.30 -25.83 -0.19 -2.28 16 25 C -0.16 -2.27 6.68 -25.92 -0.17 -2.45 16 26 H 0.06 1.00 7.63 -51.93 -0.40 0.60 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 0.92 7.61 -51.93 -0.39 0.52 16 31 H 0.04 0.94 7.54 -51.93 -0.39 0.55 16 32 H 0.05 1.37 6.87 -51.93 -0.36 1.01 16 33 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.41 6.00 8.83 -34.47 -0.30 5.69 16 35 H 0.07 1.24 7.58 -51.93 -0.39 0.85 16 36 H 0.06 0.91 7.64 -51.93 -0.40 0.52 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.47 5.86 -51.93 -0.30 0.16 16 40 H 0.05 0.47 5.86 -51.92 -0.30 0.17 16 41 H 0.11 1.87 5.56 -51.93 -0.29 1.59 16 42 H 0.07 0.93 7.48 -51.93 -0.39 0.54 16 43 H 0.09 0.93 4.83 -51.93 -0.25 0.67 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.07 0.86 7.47 -51.93 -0.39 0.48 16 46 H 0.11 1.72 6.15 -51.93 -0.32 1.40 16 LS Contribution 359.46 15.07 5.42 5.42 Total: -1.00 -29.31 359.46 -8.82 -38.13 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -7.16 Total: 11.42 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 0.44 Total: -10.67 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: 0.38 Total: -61.97 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -2.24 Total: -50.62 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.95 kcal Atomic # 16 Polarization: 54.98 SS G_CDS: -0.64 Total: 54.34 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.31 -8.82 -38.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416623713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.606 kcal (2) G-P(sol) polarization free energy of solvation -29.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds