Wall clock time and date at job start Tue Mar 31 2020 13:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46855 * 2 1 4 4 C 1.46501 * 120.00034 * 283.15146 * 3 2 1 5 5 C 1.50700 * 109.47293 * 275.00065 * 4 3 2 6 6 H 1.08000 * 119.99884 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00420 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99972 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00345 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46936 * 89.99916 * 9 7 5 11 11 H 1.48496 * 109.47141 * 210.00218 * 9 7 5 12 12 H 1.48503 * 109.46702 * 329.99943 * 9 7 5 13 13 S 1.65602 * 120.00366 * 103.15082 * 3 2 1 14 14 O 1.42094 * 106.39887 * 327.10876 * 13 3 2 15 15 O 1.42101 * 106.40310 * 194.18612 * 13 3 2 16 16 N 1.65604 * 107.21619 * 80.64452 * 13 3 2 17 17 C 1.46503 * 119.99598 * 66.37475 * 16 13 3 18 18 H 1.08997 * 109.47577 * 334.42035 * 17 16 13 19 19 C 1.53003 * 109.47173 * 94.41783 * 17 16 13 20 20 C 1.52997 * 109.47132 * 214.41563 * 17 16 13 21 21 O 1.42896 * 112.85368 * 290.33766 * 20 17 16 22 22 C 1.42901 * 114.00545 * 179.97438 * 21 20 17 23 23 C 1.53782 * 113.61691 * 159.13782 * 20 17 16 24 24 C 1.53952 * 87.02115 * 220.05110 * 23 20 17 25 25 C 1.53778 * 87.11111 * 25.36117 * 24 23 20 26 26 H 1.09003 * 109.46839 * 65.02416 * 1 2 3 27 27 H 1.08999 * 109.46729 * 185.01497 * 1 2 3 28 28 H 1.08992 * 109.47258 * 305.02123 * 1 2 3 29 29 H 1.09005 * 109.47300 * 240.00058 * 2 1 3 30 30 H 1.08998 * 109.47040 * 119.99836 * 2 1 3 31 31 H 1.09000 * 109.47450 * 34.99765 * 4 3 2 32 32 H 1.08994 * 109.47512 * 155.00056 * 4 3 2 33 33 H 0.97002 * 120.00347 * 179.97438 * 8 7 5 34 34 H 0.96994 * 120.00272 * 246.37843 * 16 13 3 35 35 H 1.08997 * 109.46982 * 300.00255 * 19 17 16 36 36 H 1.09005 * 109.46947 * 59.99544 * 19 17 16 37 37 H 1.08998 * 109.47638 * 179.97438 * 19 17 16 38 38 H 1.08991 * 109.47375 * 179.97438 * 22 21 20 39 39 H 1.08994 * 109.47052 * 300.00325 * 22 21 20 40 40 H 1.09007 * 109.46468 * 60.00222 * 22 21 20 41 41 H 1.09000 * 113.61418 * 334.56926 * 23 20 17 42 42 H 1.09003 * 113.61410 * 105.46910 * 23 20 17 43 43 H 1.08996 * 113.53849 * 270.81075 * 24 23 20 44 44 H 1.09004 * 113.74075 * 139.94360 * 24 23 20 45 45 H 1.09003 * 113.61637 * 220.08457 * 25 24 23 46 46 H 1.09006 * 113.61605 * 89.18766 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9903 2.1681 -1.2355 5 6 3.2311 1.8821 -2.0414 6 1 3.9668 1.1837 -1.6707 7 6 3.4267 2.5112 -3.2526 8 7 2.5301 3.3604 -3.7049 9 14 4.9644 2.1561 -4.2520 10 1 4.7073 1.0156 -5.1676 11 1 5.3265 3.3571 -5.0468 12 1 6.0819 1.8134 -3.3360 13 16 2.6019 2.0532 1.3965 14 8 1.8561 1.4783 2.4606 15 8 2.6763 3.4537 1.1674 16 7 4.1610 1.5259 1.5799 17 6 5.1928 1.9451 0.6281 18 1 4.7282 2.1897 -0.3271 19 6 5.9185 3.1772 1.1725 20 6 6.1968 0.8077 0.4305 21 8 7.0063 0.5752 1.5849 22 6 7.9532 -0.4834 1.4274 23 6 7.0024 0.9169 -0.8748 24 6 6.8426 -0.6086 -1.0068 25 6 5.5721 -0.4713 -0.1514 26 1 -0.3633 0.4339 -0.9316 27 1 -0.3633 -1.0237 0.0898 28 1 -0.3633 0.5897 0.8415 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.1089 1.8991 -1.8177 32 1 1.9533 3.2293 -0.9896 33 1 2.6679 3.8033 -4.5568 34 1 4.3910 0.9394 2.3175 35 1 5.2032 3.9875 1.3133 36 1 6.3831 2.9326 2.1277 37 1 6.6865 3.4889 0.4646 38 1 8.5282 -0.5963 2.3464 39 1 7.4264 -1.4128 1.2114 40 1 8.6275 -0.2480 0.6039 41 1 6.4921 1.4786 -1.6572 42 1 8.0335 1.2376 -0.7261 43 1 7.6377 -1.1733 -0.5200 44 1 6.6488 -0.9430 -2.0260 45 1 5.4500 -1.2698 0.5805 46 1 4.6698 -0.2898 -0.7356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416623713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:45 Heat of formation + Delta-G solvation = -115.020047 kcal Electronic energy + Delta-G solvation = -28566.808111 eV Core-core repulsion = 24811.774215 eV Total energy + Delta-G solvation = -3755.033896 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.54588 -38.28390 -37.67518 -36.83454 -36.62148 -35.60759 -34.62612 -31.46217 -30.95727 -28.48843 -28.30654 -26.61231 -25.37581 -24.97097 -23.17828 -22.42500 -21.04943 -20.19467 -18.75297 -18.51936 -18.27785 -17.61403 -17.07019 -16.93475 -16.29154 -16.04232 -15.76972 -15.33667 -14.84606 -14.72315 -14.55434 -14.47052 -14.31084 -13.73699 -13.72135 -13.62382 -13.37858 -13.24191 -13.18582 -13.03883 -12.94921 -12.87867 -12.69095 -12.63814 -12.44560 -12.25206 -12.22798 -12.04079 -11.67787 -11.62815 -11.50911 -11.12756 -11.00347 -10.51001 -10.29867 -10.23959 -9.73665 -8.10842 -6.23333 -0.24222 1.46297 1.46629 1.56282 2.04425 2.46484 2.62131 2.82941 3.21383 3.50620 3.58696 3.60736 3.78272 3.93412 4.02070 4.30428 4.40758 4.48130 4.49964 4.57053 4.58304 4.60554 4.66854 4.75884 4.83903 4.86675 4.89947 4.98938 5.02449 5.07135 5.09385 5.13567 5.19377 5.30591 5.32686 5.37837 5.44208 5.50061 5.61715 5.84330 5.96885 6.17290 6.28507 6.39129 6.89042 7.45896 8.97244 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009706 B = 0.008631 C = 0.005821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.996217 B = 3243.430276 C = 4809.175088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.123 3.877 3 N -0.994 5.994 4 C 0.257 3.743 5 C -0.536 4.536 6 H 0.090 0.910 7 C 0.014 3.986 8 N -0.929 5.929 9 Si 0.935 3.065 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.225 1.225 13 S 2.795 3.205 14 O -1.011 7.011 15 O -1.014 7.014 16 N -1.104 6.104 17 C 0.159 3.841 18 H 0.109 0.891 19 C -0.162 4.162 20 C 0.101 3.899 21 O -0.369 6.369 22 C 0.014 3.986 23 C -0.177 4.177 24 C -0.150 4.150 25 C -0.163 4.163 26 H 0.047 0.953 27 H 0.089 0.911 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.021 0.979 32 H 0.015 0.985 33 H 0.262 0.738 34 H 0.420 0.580 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.113 0.887 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.832 -11.172 7.234 16.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.003 4.003 3 N -0.835 5.835 4 C 0.133 3.867 5 C -0.575 4.575 6 H 0.108 0.892 7 C -0.185 4.185 8 N -0.569 5.569 9 Si 0.761 3.239 10 H -0.205 1.205 11 H -0.225 1.225 12 H -0.149 1.149 13 S 2.803 3.197 14 O -0.995 6.995 15 O -0.997 6.997 16 N -0.865 5.865 17 C 0.052 3.948 18 H 0.127 0.873 19 C -0.221 4.221 20 C 0.059 3.941 21 O -0.288 6.288 22 C -0.082 4.082 23 C -0.215 4.215 24 C -0.187 4.187 25 C -0.201 4.201 26 H 0.066 0.934 27 H 0.108 0.892 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.039 0.961 32 H 0.033 0.967 33 H 0.071 0.929 34 H 0.255 0.745 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.131 0.869 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.232 -10.239 7.719 15.800 hybrid contribution 0.547 -0.129 -1.121 1.254 sum 9.779 -10.367 6.598 15.705 Atomic orbital electron populations 1.22146 0.96099 1.02933 1.01271 1.21240 0.94728 0.81210 1.03088 1.57609 1.76694 1.23232 1.25976 1.18768 0.97332 0.89805 0.80745 1.21951 1.06168 1.25429 1.03961 0.89249 1.25765 0.99299 0.94661 0.98797 1.70079 1.36820 1.29153 1.20873 0.85965 0.81386 0.77128 0.79441 1.20529 1.22511 1.14881 1.01284 0.73126 0.72933 0.72319 1.93524 1.70683 1.79838 1.55482 1.93535 1.87091 1.33024 1.86091 1.55619 1.25423 1.66072 1.39391 1.21082 0.87474 0.93022 0.93228 0.87323 1.22152 1.00493 0.97055 1.02401 1.22622 0.90990 0.94732 0.85760 1.87870 1.50710 1.54832 1.35383 1.23251 0.91870 0.89963 1.03083 1.23829 1.01457 0.98436 0.97795 1.23338 0.98579 0.95633 1.01175 1.23568 0.98910 0.97776 0.99798 0.93395 0.89222 0.93772 0.90005 0.89655 0.96071 0.96675 0.92936 0.74455 0.93508 0.90912 0.91140 0.88510 0.92422 0.92714 0.89645 0.89831 0.86901 0.91234 0.89687 0.89362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.00 10.09 71.98 0.73 -4.28 16 2 C 0.12 3.93 6.20 86.38 0.54 4.46 16 3 N -0.99 -39.38 2.85 -519.85 -1.48 -40.86 16 4 C 0.26 12.50 5.34 85.63 0.46 12.96 16 5 C -0.54 -25.86 7.61 25.60 0.19 -25.67 16 6 H 0.09 3.87 4.68 -2.91 -0.01 3.86 16 7 C 0.01 0.73 5.46 84.65 0.46 1.20 16 8 N -0.93 -52.67 13.29 21.45 0.28 -52.39 16 9 Si 0.94 38.90 29.52 68.60 2.03 40.93 16 10 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.30 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.23 -8.11 4.71 99.48 0.47 -7.64 16 13 S 2.79 110.91 5.97 -56.49 -0.34 110.57 16 14 O -1.01 -41.21 17.31 -128.00 -2.22 -43.42 16 15 O -1.01 -48.60 15.73 -128.00 -2.01 -50.61 16 16 N -1.10 -35.67 5.32 -169.39 -0.90 -36.57 16 17 C 0.16 5.27 2.38 44.99 0.11 5.37 16 18 H 0.11 4.27 4.45 -2.39 -0.01 4.26 16 19 C -0.16 -5.25 9.28 71.98 0.67 -4.58 16 20 C 0.10 2.72 1.03 -10.27 -0.01 2.71 16 21 O -0.37 -9.00 9.94 -148.98 -1.48 -10.48 16 22 C 0.01 0.23 9.17 113.37 1.04 1.27 16 23 C -0.18 -4.67 6.88 31.18 0.21 -4.46 16 24 C -0.15 -3.30 7.30 31.18 0.23 -3.07 16 25 C -0.16 -4.07 6.68 31.12 0.21 -3.86 16 26 H 0.05 1.56 7.63 -2.39 -0.02 1.54 16 27 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 30 H 0.09 2.34 7.61 -2.39 -0.02 2.32 16 31 H 0.02 1.09 7.54 -2.39 -0.02 1.07 16 32 H 0.02 0.85 6.87 -2.39 -0.02 0.83 16 33 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 34 H 0.42 11.49 8.83 -96.75 -0.85 10.64 16 35 H 0.05 1.70 7.58 -2.39 -0.02 1.68 16 36 H 0.07 2.12 7.64 -2.38 -0.02 2.10 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.06 0.86 5.86 -2.39 -0.01 0.85 16 40 H 0.05 0.85 5.86 -2.38 -0.01 0.83 16 41 H 0.09 2.70 5.56 -2.39 -0.01 2.69 16 42 H 0.08 1.94 7.48 -2.39 -0.02 1.92 16 43 H 0.11 1.87 4.83 -2.39 -0.01 1.86 16 44 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.08 1.82 7.47 -2.39 -0.02 1.80 16 46 H 0.09 2.59 6.15 -2.38 -0.01 2.58 16 Total: -1.00 -64.96 359.46 -1.38 -66.34 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: -0.09 Total: 34.44 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 4.83 Total: -17.94 kcal Atomic # 7 Polarization: -127.72 SS G_CDS: -2.10 Total: -129.82 kcal Atomic # 8 Polarization: -98.80 SS G_CDS: -5.71 Total: -104.51 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Atomic # 16 Polarization: 110.91 SS G_CDS: -0.34 Total: 110.57 kcal Total: -64.96 -1.38 -66.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416623713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.679 kcal (2) G-P(sol) polarization free energy of solvation -64.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds