Wall clock time and date at job start Tue Mar 31 2020 12:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46997 * 2 1 4 4 C 1.53001 * 109.47016 * 119.99845 * 2 1 3 5 5 C 1.53000 * 117.50223 * 299.99980 * 4 2 1 6 6 C 1.52997 * 117.49889 * 231.37242 * 4 2 1 7 7 N 1.46499 * 109.46736 * 239.99854 * 2 1 3 8 8 C 1.35231 * 125.99699 * 324.71213 * 7 2 1 9 9 C 1.35850 * 107.63898 * 179.90251 * 8 7 2 10 10 N 1.40484 * 126.10990 * 180.16026 * 9 8 7 11 11 C 1.34778 * 120.00230 * 180.26920 * 10 9 8 12 12 O 1.21399 * 119.99613 * 359.97438 * 11 10 9 13 13 C 1.49321 * 120.00157 * 179.97438 * 11 10 9 14 14 O 1.21363 * 120.00264 * 359.97438 * 13 11 10 15 15 N 1.34786 * 119.99760 * 179.97438 * 13 11 10 16 16 C 1.46502 * 119.99575 * 179.97438 * 15 13 11 17 17 C 1.53001 * 109.46605 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.46883 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00224 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99752 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00138 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99807 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47095 * 90.00048 * 22 20 18 24 24 H 1.48496 * 109.47210 * 210.00151 * 22 20 18 25 25 H 1.48503 * 109.46926 * 330.00019 * 22 20 18 26 26 C 1.40334 * 107.77474 * 0.36274 * 9 8 7 27 27 N 1.30826 * 108.20818 * 359.77690 * 26 9 8 28 28 H 1.09007 * 109.47169 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47267 * 300.00032 * 1 2 3 30 30 H 1.08997 * 109.47409 * 59.99734 * 1 2 3 31 31 H 1.09002 * 115.55911 * 85.68670 * 4 2 1 32 32 H 1.08990 * 117.49990 * 145.01974 * 5 4 2 33 33 H 1.09004 * 117.49237 * 359.97438 * 5 4 2 34 34 H 1.08999 * 117.49685 * 0.02562 * 6 4 2 35 35 H 1.08997 * 117.50044 * 214.98097 * 6 4 2 36 36 H 1.07998 * 126.17555 * 0.03861 * 8 7 2 37 37 H 0.97006 * 120.00072 * 0.26627 * 10 9 8 38 38 H 0.96997 * 119.99836 * 0.02562 * 15 13 11 39 39 H 1.08997 * 109.47335 * 300.00215 * 16 15 13 40 40 H 1.08996 * 109.46770 * 60.00614 * 16 15 13 41 41 H 1.09007 * 109.47071 * 299.99925 * 17 16 15 42 42 H 1.08991 * 109.47464 * 60.00187 * 17 16 15 43 43 H 0.97001 * 120.00209 * 179.97438 * 21 20 18 44 44 H 1.08003 * 125.89398 * 179.75184 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6357 -0.1495 2.6097 6 6 3.0742 0.0051 2.1116 7 7 2.0182 -0.6906 -1.1962 8 6 1.4411 -1.7615 -1.7869 9 6 2.1989 -2.0958 -2.8637 10 7 1.9495 -3.1518 -3.7559 11 6 2.7898 -3.3772 -4.7852 12 8 3.7621 -2.6673 -4.9415 13 6 2.5250 -4.5001 -5.7332 14 8 1.5532 -5.2101 -5.5767 15 7 3.3652 -4.7251 -6.7628 16 6 3.1056 -5.8271 -7.6926 17 6 4.2014 -5.8628 -8.7597 18 6 3.9341 -6.9960 -9.7166 19 1 3.0694 -7.6278 -9.5772 20 6 4.7936 -7.2261 -10.7699 21 7 5.8463 -6.4564 -10.9399 22 14 4.4626 -8.6312 -11.9555 23 1 3.6173 -8.1451 -13.0754 24 1 5.7505 -9.1398 -12.4921 25 1 3.7571 -9.7255 -11.2415 26 6 3.2779 -1.2005 -2.9227 27 7 3.1680 -0.3614 -1.9250 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 2.1270 -1.8044 1.1644 32 1 1.4569 -0.8565 3.4196 33 1 1.0068 0.7408 2.6145 34 1 3.3909 0.9970 1.7892 35 1 3.8416 -0.6002 2.5941 36 1 0.5394 -2.2595 -1.4625 37 1 1.1723 -3.7189 -3.6312 38 1 4.1420 -4.1579 -6.8877 39 1 3.1004 -6.7701 -7.1460 40 1 2.1373 -5.6788 -8.1705 41 1 4.2070 -4.9197 -9.3065 42 1 5.1696 -6.0113 -8.2816 43 1 6.4511 -6.6185 -11.6807 44 1 4.0637 -1.2038 -3.6637 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426963725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:31 Heat of formation + Delta-G solvation = 30.727868 kcal Electronic energy + Delta-G solvation = -25366.508384 eV Core-core repulsion = 21514.643391 eV Total energy + Delta-G solvation = -3851.864993 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.73174 -40.31914 -38.59109 -38.09828 -35.53612 -34.68533 -33.67377 -32.85234 -30.03466 -29.87274 -29.17293 -25.95086 -24.93771 -23.74011 -22.82544 -22.28076 -21.50304 -20.90944 -20.43888 -19.79587 -18.26972 -17.87090 -16.69875 -16.25478 -16.08390 -15.87711 -15.63478 -15.40346 -14.84680 -14.62593 -14.47614 -14.34626 -14.04158 -13.68562 -13.52453 -13.14550 -12.99949 -12.87865 -12.57660 -12.32592 -11.98896 -11.76694 -11.43872 -11.22982 -11.10531 -11.06371 -11.02747 -10.89615 -10.66794 -10.60993 -10.40585 -9.80127 -9.61915 -9.46202 -9.21925 -8.72548 -8.42146 -7.95459 -6.10081 -4.13839 1.27035 1.76961 1.99110 2.56888 2.68540 3.20255 3.29227 3.35606 3.39109 3.46013 3.83607 3.98244 4.19210 4.34163 4.40095 4.47148 4.47814 4.56745 4.69190 4.74353 4.86570 4.99927 5.10732 5.23292 5.26843 5.32314 5.37098 5.39864 5.50606 5.57896 5.63161 5.91333 6.16784 6.22803 6.56617 6.61403 6.67517 6.72612 7.01964 7.42176 7.49968 7.57580 7.65970 7.86854 7.89156 8.18952 8.31091 8.91721 9.51103 11.01323 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.041949 B = 0.001783 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.322371 B =15698.339277 C =15994.258015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.196 3.804 3 H 0.103 0.897 4 C -0.173 4.173 5 C -0.168 4.168 6 C -0.171 4.171 7 N -0.360 5.360 8 C 0.025 3.975 9 C -0.002 4.002 10 N -0.617 5.617 11 C 0.509 3.491 12 O -0.509 6.509 13 C 0.503 3.497 14 O -0.533 6.533 15 N -0.683 5.683 16 C 0.119 3.881 17 C 0.010 3.990 18 C -0.524 4.524 19 H 0.060 0.940 20 C 0.060 3.940 21 N -0.892 5.892 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.054 3.946 27 N -0.283 5.283 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.176 0.824 37 H 0.421 0.579 38 H 0.412 0.588 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.263 0.737 44 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.844 14.152 26.642 32.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.094 3.906 3 H 0.121 0.879 4 C -0.192 4.192 5 C -0.206 4.206 6 C -0.208 4.208 7 N -0.144 5.144 8 C -0.123 4.123 9 C -0.107 4.107 10 N -0.264 5.264 11 C 0.291 3.709 12 O -0.383 6.383 13 C 0.282 3.718 14 O -0.411 6.411 15 N -0.334 5.334 16 C -0.003 4.003 17 C -0.027 4.027 18 C -0.563 4.563 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.133 4.133 27 N -0.104 5.104 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.193 0.807 37 H 0.258 0.742 38 H 0.247 0.753 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -10.201 15.201 27.142 32.738 hybrid contribution -0.472 -1.588 -1.096 1.986 sum -10.673 13.613 26.046 31.267 Atomic orbital electron populations 1.22169 0.92490 1.03701 1.03691 1.20745 0.94403 0.95934 0.79474 0.87887 1.22680 1.05510 1.00014 0.91025 1.22987 0.98424 1.03188 0.95973 1.23052 0.92557 1.02146 1.03014 1.48321 1.19750 1.23804 1.22573 1.21702 1.00975 0.93836 0.95803 1.17741 1.00247 0.96566 0.96108 1.42423 1.28305 1.30159 1.25493 1.20468 0.82928 0.85623 0.81868 1.90647 1.27812 1.47447 1.72441 1.19709 0.84373 0.84891 0.82859 1.90743 1.28456 1.48308 1.73569 1.46225 1.27196 1.33590 1.26391 1.21959 1.01460 0.86711 0.90162 1.19366 0.92822 0.98351 0.92183 1.21009 1.10296 1.14236 1.10722 0.92156 1.25002 0.94940 0.96580 0.97738 1.69957 1.13680 1.38527 1.30835 0.86496 0.77630 0.82257 0.81063 1.20555 1.21162 1.19738 1.24574 0.99057 0.92177 0.97501 1.77430 1.02367 1.23584 1.07047 0.91259 0.89868 0.91237 0.87207 0.88291 0.88346 0.88326 0.88513 0.80682 0.74155 0.75260 0.91776 0.91766 0.95606 0.95599 0.92766 0.77600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 8.68 37.16 0.32 -0.34 16 2 C 0.20 1.27 3.55 -67.93 -0.24 1.02 16 3 H 0.10 0.67 7.90 -51.93 -0.41 0.26 16 4 C -0.17 -1.02 5.45 -90.62 -0.49 -1.52 16 5 C -0.17 -0.69 9.74 -26.73 -0.26 -0.95 16 6 C -0.17 -0.97 10.18 -26.73 -0.27 -1.24 16 7 N -0.36 -3.48 3.53 -54.66 -0.19 -3.67 16 8 C 0.02 0.23 10.63 -16.91 -0.18 0.05 16 9 C 0.00 -0.02 6.90 -83.96 -0.58 -0.60 16 10 N -0.62 -7.39 5.46 -10.49 -0.06 -7.45 16 11 C 0.51 7.48 7.86 -11.65 -0.09 7.39 16 12 O -0.51 -8.18 13.63 5.45 0.07 -8.10 16 13 C 0.50 8.37 7.88 -11.64 -0.09 8.27 16 14 O -0.53 -9.71 16.48 5.49 0.09 -9.62 16 15 N -0.68 -12.10 5.55 -60.77 -0.34 -12.44 16 16 C 0.12 2.43 5.61 -4.04 -0.02 2.41 16 17 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 18 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 22 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 C 0.05 0.72 10.84 -17.19 -0.19 0.54 16 27 N -0.28 -3.62 12.56 30.72 0.39 -3.24 16 28 H 0.07 0.25 7.16 -51.92 -0.37 -0.13 16 29 H 0.08 0.21 7.29 -51.93 -0.38 -0.17 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.10 0.29 7.61 -51.93 -0.40 -0.11 16 34 H 0.10 0.55 8.05 -51.93 -0.42 0.13 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.18 0.98 7.27 -52.49 -0.38 0.60 16 37 H 0.42 4.20 8.29 -40.82 -0.34 3.86 16 38 H 0.41 6.91 7.94 -40.82 -0.32 6.59 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 44 H 0.21 2.91 5.92 -52.48 -0.31 2.60 16 LS Contribution 376.93 15.07 5.68 5.68 Total: -1.00 -32.28 376.93 -7.54 -39.82 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.25 Total: 6.00 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -2.65 Total: 2.09 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.53 Total: -52.02 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: 0.16 Total: -17.73 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.28 -7.54 -39.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426963725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.549 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds