Wall clock time and date at job start Tue Mar 31 2020 12:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09007 * 109.47201 * 2 1 4 4 C 1.53007 * 109.47111 * 240.00734 * 2 1 3 5 5 C 1.52996 * 117.50217 * 128.62116 * 4 2 1 6 6 C 1.52996 * 117.49828 * 59.99563 * 4 2 1 7 7 N 1.46496 * 109.47769 * 120.00506 * 2 1 3 8 8 C 1.35224 * 125.99215 * 34.99787 * 7 2 1 9 9 C 1.35850 * 107.64407 * 180.02562 * 8 7 2 10 10 N 1.40487 * 126.11575 * 179.97438 * 9 8 7 11 11 C 1.34777 * 119.99751 * 179.97438 * 10 9 8 12 12 O 1.21403 * 120.00386 * 0.02562 * 11 10 9 13 13 C 1.49328 * 119.99582 * 179.72617 * 11 10 9 14 14 O 1.21363 * 120.00419 * 0.28188 * 13 11 10 15 15 N 1.34777 * 119.99982 * 180.27489 * 13 11 10 16 16 C 1.46499 * 120.00065 * 180.02562 * 15 13 11 17 17 C 1.53011 * 109.46911 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.46921 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99770 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00083 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99711 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00121 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47213 * 60.00232 * 22 20 18 24 24 H 1.48502 * 109.47317 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47081 * 299.99860 * 22 20 18 26 26 C 1.40334 * 107.77201 * 0.23112 * 9 8 7 27 27 N 1.30834 * 108.20908 * 359.61095 * 26 9 8 28 28 H 1.09007 * 109.47201 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47055 * 299.98994 * 1 2 3 30 30 H 1.08997 * 109.47652 * 59.99684 * 1 2 3 31 31 H 1.08998 * 115.54703 * 274.32941 * 4 2 1 32 32 H 1.09006 * 117.49978 * 359.97438 * 5 4 2 33 33 H 1.08998 * 117.50158 * 145.02299 * 5 4 2 34 34 H 1.09004 * 117.49509 * 214.97988 * 6 4 2 35 35 H 1.09002 * 117.50008 * 359.97438 * 6 4 2 36 36 H 1.08000 * 126.18047 * 0.04151 * 8 7 2 37 37 H 0.97001 * 119.99764 * 0.02562 * 10 9 8 38 38 H 0.97000 * 119.99555 * 0.02562 * 15 13 11 39 39 H 1.08995 * 109.47424 * 300.00018 * 16 15 13 40 40 H 1.08992 * 109.46844 * 60.00609 * 16 15 13 41 41 H 1.08995 * 109.46784 * 300.00034 * 17 16 15 42 42 H 1.08993 * 109.46738 * 60.00130 * 17 16 15 43 43 H 0.96999 * 119.99800 * 179.97438 * 21 20 18 44 44 H 1.07997 * 125.90145 * 179.77534 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.0740 0.0053 -2.1118 6 6 1.6355 -0.1493 -2.6096 7 7 2.0184 -0.6907 1.1960 8 6 1.4384 -1.7582 1.7898 9 6 2.1983 -2.0949 2.8644 10 7 1.9485 -3.1506 3.7571 11 6 2.7886 -3.3754 4.7867 12 8 3.7610 -2.6655 4.9430 13 6 2.5197 -4.4937 5.7391 14 8 1.5476 -5.2032 5.5831 15 7 3.3568 -4.7152 6.7719 16 6 3.0933 -5.8126 7.7060 17 6 4.1856 -5.8441 8.7770 18 6 3.9150 -6.9733 9.7375 19 1 3.0502 -7.6051 9.5982 20 6 4.7713 -7.2000 10.7940 21 7 5.8246 -6.4309 10.9632 22 14 4.4354 -8.5993 11.9849 23 1 4.4287 -9.8874 11.2460 24 1 5.4955 -8.6300 13.0244 25 1 3.1147 -8.3927 12.6316 26 6 3.2742 -1.1961 2.9267 27 7 3.1676 -0.3608 1.9254 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 2.1266 -1.8043 -1.1645 32 1 3.3908 0.9973 -1.7893 33 1 3.8414 -0.5999 -2.5944 34 1 1.4567 -0.8563 -3.4197 35 1 1.0058 0.7404 -2.6145 36 1 0.5345 -2.2538 1.4678 37 1 1.1718 -3.7180 3.6319 38 1 4.1337 -4.1479 6.8968 39 1 2.1239 -5.6610 8.1806 40 1 3.0885 -6.7580 7.1636 41 1 5.1552 -5.9955 8.3027 42 1 4.1900 -4.8986 9.3192 43 1 6.4269 -6.5902 11.7067 44 1 4.0567 -1.1957 3.6710 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426963726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:35 Heat of formation + Delta-G solvation = 30.783588 kcal Electronic energy + Delta-G solvation = -25366.015746 eV Core-core repulsion = 21514.153170 eV Total energy + Delta-G solvation = -3851.862576 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.73148 -40.31865 -38.59103 -38.09800 -35.53595 -34.68515 -33.67453 -32.85184 -30.03388 -29.87197 -29.17340 -25.95068 -24.93791 -23.73866 -22.82545 -22.28054 -21.50138 -20.90877 -20.43929 -19.79571 -18.26978 -17.87081 -16.69773 -16.25428 -16.08006 -15.87918 -15.63516 -15.40228 -14.84654 -14.62625 -14.47895 -14.34752 -14.04134 -13.68552 -13.52378 -13.14651 -12.99824 -12.87946 -12.57555 -12.31886 -11.98831 -11.76664 -11.43929 -11.23321 -11.10396 -11.04824 -11.02728 -10.89678 -10.68505 -10.60974 -10.39679 -9.80262 -9.61958 -9.46482 -9.22649 -8.72437 -8.41742 -7.95459 -6.09777 -4.13660 1.27063 1.77062 1.98957 2.56864 2.68523 3.20325 3.30910 3.35258 3.37795 3.46023 3.83618 3.98247 4.19232 4.34165 4.40218 4.47164 4.47754 4.56753 4.69206 4.74341 4.86555 4.99931 5.10756 5.23262 5.27031 5.32288 5.37100 5.39815 5.50605 5.57881 5.63189 5.91311 6.16790 6.22868 6.56653 6.61393 6.67569 6.72610 7.01993 7.42140 7.49910 7.57720 7.65968 7.86940 7.89181 8.19064 8.31157 8.91637 9.51229 11.01597 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.042058 B = 0.001783 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.585049 B =15701.355899 C =15998.733336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.196 3.804 3 H 0.103 0.897 4 C -0.173 4.173 5 C -0.171 4.171 6 C -0.168 4.168 7 N -0.360 5.360 8 C 0.025 3.975 9 C -0.002 4.002 10 N -0.617 5.617 11 C 0.509 3.491 12 O -0.509 6.509 13 C 0.503 3.497 14 O -0.533 6.533 15 N -0.683 5.683 16 C 0.118 3.882 17 C 0.011 3.989 18 C -0.525 4.525 19 H 0.060 0.940 20 C 0.060 3.940 21 N -0.892 5.892 22 Si 0.898 3.102 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.054 3.946 27 N -0.283 5.283 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.176 0.824 37 H 0.421 0.579 38 H 0.412 0.588 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.263 0.737 44 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.791 14.105 -26.677 32.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.094 3.906 3 H 0.121 0.879 4 C -0.192 4.192 5 C -0.208 4.208 6 C -0.206 4.206 7 N -0.144 5.144 8 C -0.123 4.123 9 C -0.107 4.107 10 N -0.264 5.264 11 C 0.291 3.709 12 O -0.383 6.383 13 C 0.282 3.718 14 O -0.411 6.411 15 N -0.334 5.334 16 C -0.003 4.003 17 C -0.027 4.027 18 C -0.563 4.563 19 H 0.078 0.922 20 C -0.142 4.142 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.133 4.133 27 N -0.104 5.104 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.193 0.807 37 H 0.258 0.742 38 H 0.247 0.753 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -10.142 15.155 -27.175 32.726 hybrid contribution -0.483 -1.596 1.089 1.992 sum -10.625 13.559 -26.086 31.260 Atomic orbital electron populations 1.22167 0.92489 1.03704 1.03694 1.20745 0.94399 0.95931 0.79486 0.87894 1.22678 1.05510 1.00013 0.91021 1.23051 0.92555 1.02144 1.03010 1.22987 0.98421 1.03194 0.95976 1.48318 1.19628 1.23986 1.22511 1.21701 1.00866 0.93887 0.95862 1.17742 1.00261 0.96506 0.96159 1.42422 1.28311 1.30163 1.25481 1.20470 0.82935 0.85597 0.81886 1.90648 1.27809 1.47349 1.72541 1.19709 0.84374 0.84860 0.82891 1.90743 1.28384 1.48172 1.73782 1.46222 1.27279 1.33808 1.26085 1.21960 1.01447 0.86837 0.90055 1.19360 0.92860 0.98333 0.92128 1.20969 1.10389 1.14455 1.10521 0.92211 1.24996 0.94941 0.96552 0.97750 1.69948 1.13734 1.38522 1.30800 0.86553 0.77935 0.82401 0.80512 1.20115 1.21235 1.20116 1.24575 0.99116 0.92151 0.97465 1.77436 1.02485 1.23617 1.06892 0.91257 0.91242 0.89858 0.87208 0.88326 0.88510 0.88296 0.88345 0.80681 0.74155 0.75260 0.91773 0.91772 0.95609 0.95607 0.92710 0.77602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 8.67 37.15 0.32 -0.34 16 2 C 0.20 1.27 3.55 -67.93 -0.24 1.02 16 3 H 0.10 0.67 7.90 -51.93 -0.41 0.26 16 4 C -0.17 -1.02 5.45 -90.62 -0.49 -1.52 16 5 C -0.17 -0.96 10.18 -26.73 -0.27 -1.24 16 6 C -0.17 -0.69 9.73 -26.73 -0.26 -0.95 16 7 N -0.36 -3.48 3.53 -54.66 -0.19 -3.67 16 8 C 0.02 0.23 10.63 -16.91 -0.18 0.05 16 9 C 0.00 -0.02 6.90 -83.96 -0.58 -0.60 16 10 N -0.62 -7.39 5.46 -10.48 -0.06 -7.45 16 11 C 0.51 7.48 7.86 -11.64 -0.09 7.39 16 12 O -0.51 -8.18 13.63 5.45 0.07 -8.11 16 13 C 0.50 8.37 7.89 -11.64 -0.09 8.28 16 14 O -0.53 -9.71 16.48 5.49 0.09 -9.62 16 15 N -0.68 -12.10 5.55 -60.77 -0.34 -12.44 16 16 C 0.12 2.43 5.61 -4.04 -0.02 2.40 16 17 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 18 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 22 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.05 0.72 10.84 -17.19 -0.19 0.54 16 27 N -0.28 -3.62 12.56 30.72 0.39 -3.24 16 28 H 0.07 0.25 7.16 -51.93 -0.37 -0.13 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.21 7.29 -51.93 -0.38 -0.17 16 31 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.10 0.55 8.05 -51.93 -0.42 0.13 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.10 0.29 7.61 -51.93 -0.39 -0.11 16 36 H 0.18 0.98 7.26 -52.49 -0.38 0.60 16 37 H 0.42 4.20 8.29 -40.82 -0.34 3.86 16 38 H 0.41 6.92 7.94 -40.82 -0.32 6.59 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.21 2.91 5.92 -52.49 -0.31 2.60 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -32.25 376.91 -7.54 -39.79 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.25 Total: 6.04 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -2.65 Total: 2.09 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.53 Total: -52.03 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: 0.16 Total: -17.73 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.25 -7.54 -39.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426963726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.576 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds