Wall clock time and date at job start Tue Mar 31 2020 13:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47367 * 2 1 4 4 C 1.34775 * 120.00164 * 180.02562 * 3 2 1 5 5 O 1.21586 * 119.99842 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99907 * 179.97438 * 4 3 2 7 7 C 1.39948 * 119.99791 * 184.49926 * 6 4 3 8 8 C 1.38937 * 120.03406 * 325.26551 * 7 6 4 9 9 C 1.38140 * 120.06840 * 180.02562 * 8 7 6 10 10 C 1.38183 * 120.13646 * 359.97438 * 9 8 7 11 11 C 1.38899 * 120.07183 * 0.02562 * 10 9 8 12 12 N 1.39941 * 120.03325 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99990 * 34.72875 * 12 11 10 14 14 O 1.21590 * 120.00121 * 355.48764 * 13 12 11 15 15 N 1.34774 * 119.99955 * 175.49066 * 13 12 11 16 16 C 1.46499 * 119.99801 * 179.97438 * 15 13 12 17 17 C 1.50708 * 109.46860 * 179.97438 * 16 15 13 18 18 H 1.07998 * 119.99990 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00025 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99947 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00123 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47149 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47117 * 120.00641 * 21 19 17 24 24 H 1.48506 * 109.47142 * 240.00225 * 21 19 17 25 25 C 1.38716 * 120.03248 * 145.29229 * 7 6 4 26 26 C 1.50704 * 120.07092 * 359.97438 * 25 7 6 27 27 H 1.08997 * 109.47073 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47160 * 300.00678 * 1 2 3 29 29 H 1.09001 * 109.47329 * 60.00208 * 1 2 3 30 30 H 1.08995 * 109.47415 * 239.99862 * 2 1 3 31 31 H 1.09005 * 109.47196 * 119.99311 * 2 1 3 32 32 H 0.97003 * 119.99933 * 359.97438 * 3 2 1 33 33 H 0.96993 * 120.00002 * 4.49931 * 6 4 3 34 34 H 1.08000 * 119.96910 * 0.02562 * 8 7 6 35 35 H 1.08000 * 119.92990 * 180.02562 * 9 8 7 36 36 H 1.07996 * 119.96146 * 179.74814 * 10 9 8 37 37 H 0.97001 * 119.99984 * 214.71978 * 12 11 10 38 38 H 0.97003 * 120.00236 * 359.97438 * 15 13 12 39 39 H 1.08999 * 109.47108 * 299.99657 * 16 15 13 40 40 H 1.08997 * 109.47191 * 60.00043 * 16 15 13 41 41 H 0.96999 * 120.00173 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.46889 * 90.00277 * 26 25 7 43 43 H 1.08995 * 109.46928 * 209.99802 * 26 25 7 44 44 H 1.08994 * 109.46800 * 330.00552 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1335 0.7033 -0.0005 6 7 3.7927 2.8982 -0.0010 7 6 5.1650 3.1551 -0.0967 8 6 6.0770 2.2937 0.5005 9 6 7.4318 2.5469 0.4070 10 6 7.8843 3.6567 -0.2807 11 6 6.9777 4.5217 -0.8799 12 7 7.4369 5.6451 -1.5766 13 6 8.5911 5.5829 -2.2697 14 8 9.2748 4.5785 -2.2233 15 7 8.9876 6.6341 -3.0142 16 6 10.2425 6.5666 -3.7671 17 6 10.4524 7.8607 -4.5104 18 1 9.7242 8.6541 -4.4297 19 6 11.5748 8.0321 -5.2927 20 7 12.4619 7.0661 -5.3906 21 14 11.8354 9.6363 -6.2135 22 1 10.7015 10.5549 -5.9382 23 1 13.1026 10.2657 -5.7625 24 1 11.9096 9.3639 -7.6714 25 6 5.6161 4.2703 -0.7873 26 6 4.6296 5.2068 -1.4362 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.3880 2.1185 -0.0004 33 1 3.1648 3.6346 0.0648 34 1 5.7265 1.4252 1.0383 35 1 8.1388 1.8755 0.8717 36 1 8.9439 3.8541 -0.3486 37 1 6.9244 6.4685 -1.5609 38 1 8.4421 7.4353 -3.0515 39 1 11.0713 6.4044 -3.0780 40 1 10.1952 5.7426 -4.4790 41 1 13.2513 7.1866 -5.9412 42 1 4.3481 5.9859 -0.7276 43 1 5.0854 5.6625 -2.3151 44 1 3.7419 4.6493 -1.7348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433724291.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:52 Heat of formation + Delta-G solvation = -31.338645 kcal Electronic energy + Delta-G solvation = -25949.263601 eV Core-core repulsion = 22094.707202 eV Total energy + Delta-G solvation = -3854.556399 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.96197 -39.98672 -38.39461 -35.89882 -35.09446 -34.22706 -34.14017 -32.38106 -31.97297 -30.76378 -28.65217 -27.16534 -26.55680 -24.00055 -23.13235 -22.20699 -21.32082 -21.10944 -20.11923 -18.88203 -18.18965 -17.84796 -16.40858 -16.13931 -15.93020 -15.55171 -15.37779 -15.00552 -14.74754 -14.61160 -14.57980 -14.12667 -13.88003 -13.74867 -13.25740 -13.10780 -12.92403 -12.54475 -12.29037 -12.27368 -12.02716 -12.00428 -11.82914 -11.59695 -11.22789 -10.95481 -10.94939 -10.61478 -10.33408 -10.24774 -9.74055 -9.48330 -9.38752 -9.33824 -8.76592 -8.18259 -7.97805 -7.57666 -6.17603 -4.24580 1.43026 1.56558 2.29218 2.91668 3.19620 3.22892 3.30706 3.33821 3.70618 3.86088 4.07927 4.30880 4.51934 4.64926 4.84642 4.88116 4.94214 4.98722 5.18698 5.25171 5.35303 5.44675 5.47110 5.47493 5.55893 5.67588 5.70694 5.78973 5.95630 6.06431 6.24116 6.40569 6.52299 6.66118 6.80693 6.87475 7.06513 7.31863 7.41490 7.50248 7.52541 7.61821 7.82820 7.98489 8.25824 8.68993 8.83916 9.20971 9.42805 10.92579 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028423 B = 0.002115 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.884218 B =13236.658769 C =13682.700314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.132 3.868 3 N -0.745 5.745 4 C 0.702 3.298 5 O -0.569 6.569 6 N -0.681 5.681 7 C 0.172 3.828 8 C -0.139 4.139 9 C -0.090 4.090 10 C -0.130 4.130 11 C 0.196 3.804 12 N -0.693 5.693 13 C 0.690 3.310 14 O -0.580 6.580 15 N -0.722 5.722 16 C 0.265 3.735 17 C -0.543 4.543 18 H 0.063 0.937 19 C 0.064 3.936 20 N -0.884 5.884 21 Si 0.905 3.095 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.150 4.150 26 C -0.110 4.110 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.396 0.604 33 H 0.404 0.596 34 H 0.137 0.863 35 H 0.126 0.874 36 H 0.145 0.855 37 H 0.401 0.599 38 H 0.388 0.612 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.266 0.734 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.646 -6.883 13.362 29.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.008 3.992 3 N -0.402 5.402 4 C 0.402 3.598 5 O -0.445 6.445 6 N -0.329 5.329 7 C 0.078 3.922 8 C -0.161 4.161 9 C -0.109 4.109 10 C -0.151 4.151 11 C 0.099 3.901 12 N -0.341 5.341 13 C 0.391 3.609 14 O -0.457 6.457 15 N -0.374 5.374 16 C 0.145 3.855 17 C -0.582 4.582 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.521 5.521 21 Si 0.732 3.268 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.156 4.156 26 C -0.167 4.167 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.230 0.770 33 H 0.239 0.761 34 H 0.155 0.845 35 H 0.144 0.856 36 H 0.162 0.838 37 H 0.236 0.764 38 H 0.220 0.780 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.077 -8.702 13.188 28.799 hybrid contribution -0.923 2.313 -0.652 2.574 sum -25.000 -6.389 12.536 28.687 Atomic orbital electron populations 1.22014 0.94350 1.03383 1.02518 1.21188 0.93865 0.81492 1.02647 1.45182 1.05089 1.09384 1.80535 1.15924 0.82774 0.83138 0.77969 1.90957 1.54328 1.43025 1.56156 1.42453 1.06585 1.06834 1.76987 1.16879 0.81556 0.95687 0.98110 1.21166 0.92478 1.00752 1.01666 1.20936 0.94900 0.96747 0.98305 1.21428 1.01192 0.95428 0.97084 1.17024 0.90762 0.88994 0.93363 1.42758 1.25210 1.13552 1.52558 1.16156 0.80676 0.84813 0.79295 1.90887 1.54937 1.31497 1.68381 1.45769 1.27163 1.15283 1.49186 1.19058 0.78672 0.97521 0.90296 1.21242 1.07354 1.00153 1.29402 0.91844 1.24948 0.95507 0.97178 0.96400 1.69987 1.10949 1.32165 1.39021 0.86346 0.78193 0.82793 0.79457 1.19682 1.20791 1.20802 1.19229 0.93159 0.99237 1.03958 1.20609 0.97713 0.97961 1.00407 0.90567 0.91980 0.91927 0.91396 0.91438 0.77020 0.76119 0.84534 0.85632 0.83776 0.76362 0.77990 0.95459 0.95491 0.92457 0.91461 0.91132 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.54 10.03 37.15 0.37 -0.17 16 2 C 0.13 0.83 6.39 -4.04 -0.03 0.81 16 3 N -0.75 -5.12 5.56 -65.23 -0.36 -5.48 16 4 C 0.70 7.71 8.41 -86.91 -0.73 6.98 16 5 O -0.57 -8.71 13.75 5.29 0.07 -8.64 16 6 N -0.68 -6.52 4.75 -14.24 -0.07 -6.59 16 7 C 0.17 2.22 6.28 -83.72 -0.53 1.69 16 8 C -0.14 -2.00 8.70 -39.36 -0.34 -2.34 16 9 C -0.09 -1.32 10.03 -39.64 -0.40 -1.72 16 10 C -0.13 -2.18 8.69 -39.36 -0.34 -2.52 16 11 C 0.20 3.04 6.28 -83.72 -0.53 2.52 16 12 N -0.69 -10.70 4.75 -14.24 -0.07 -10.77 16 13 C 0.69 14.14 8.41 -86.92 -0.73 13.41 16 14 O -0.58 -14.23 13.76 5.29 0.07 -14.16 16 15 N -0.72 -15.11 5.55 -66.41 -0.37 -15.48 16 16 C 0.27 7.01 5.43 -5.19 -0.03 6.98 16 17 C -0.54 -14.60 9.28 -34.44 -0.32 -14.92 16 18 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.88 -25.98 13.29 55.43 0.74 -25.24 16 21 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.15 -1.92 5.91 -104.25 -0.62 -2.54 16 26 C -0.11 -1.00 8.94 36.01 0.32 -0.68 16 27 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.40 1.45 8.49 -40.82 -0.35 1.10 16 33 H 0.40 2.40 7.86 -40.82 -0.32 2.08 16 34 H 0.14 2.01 6.19 -52.49 -0.32 1.68 16 35 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.14 2.73 6.20 -52.49 -0.33 2.41 16 37 H 0.40 4.73 7.86 -40.82 -0.32 4.41 16 38 H 0.39 6.80 8.34 -40.82 -0.34 6.46 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.69 7.17 -51.93 -0.37 0.32 16 44 H 0.06 0.50 7.17 -51.93 -0.37 0.12 16 LS Contribution 368.89 15.07 5.56 5.56 Total: -1.00 -35.98 368.89 -9.50 -45.48 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -6.06 Total: 10.46 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -3.99 Total: 9.15 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: -0.13 Total: -63.56 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: 0.15 Total: -22.80 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.98 -9.50 -45.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433724291.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.142 kcal (2) G-P(sol) polarization free energy of solvation -35.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds