Wall clock time and date at job start Tue Mar 31 2020 12:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47455 * 2 1 4 4 C 1.50706 * 109.46864 * 119.99605 * 2 1 3 5 5 H 1.07994 * 120.00232 * 120.00099 * 4 2 1 6 6 C 1.37879 * 119.99820 * 299.99906 * 4 2 1 7 7 N 1.31521 * 120.00254 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99959 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47346 * 120.00132 * 8 6 4 11 11 H 1.48505 * 109.47182 * 239.99872 * 8 6 4 12 12 N 1.46494 * 109.47326 * 239.99141 * 2 1 3 13 13 C 1.46502 * 120.00396 * 300.00336 * 12 2 1 14 14 C 1.34779 * 119.99923 * 120.00160 * 12 2 1 15 15 O 1.21579 * 119.99789 * 0.02562 * 14 12 2 16 16 N 1.34775 * 120.00026 * 180.02562 * 14 12 2 17 17 C 1.39555 * 120.00114 * 184.59289 * 16 14 12 18 18 C 1.39345 * 120.82672 * 145.35139 * 17 16 14 19 19 C 1.38280 * 119.27184 * 179.97438 * 18 17 16 20 20 N 1.31634 * 120.98439 * 359.72539 * 19 18 17 21 21 C 1.32804 * 121.81162 * 0.56848 * 20 19 18 22 22 C 1.48179 * 119.69186 * 179.70970 * 21 20 19 23 23 O 1.21504 * 120.00129 * 186.55653 * 22 21 20 24 24 N 1.34779 * 119.99935 * 6.55247 * 22 21 20 25 25 C 1.46501 * 120.00087 * 185.25252 * 24 22 21 26 26 C 1.46500 * 119.99929 * 4.98186 * 24 22 21 27 27 C 1.39074 * 120.61712 * 359.43526 * 21 20 19 28 28 H 1.08998 * 109.46952 * 60.00721 * 1 2 3 29 29 H 1.09004 * 109.47108 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46844 * 300.00651 * 1 2 3 31 31 H 0.96995 * 119.99963 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47024 * 270.00158 * 13 12 2 33 33 H 1.09002 * 109.46656 * 29.99906 * 13 12 2 34 34 H 1.08997 * 109.47520 * 149.99593 * 13 12 2 35 35 H 0.96997 * 119.99958 * 4.59818 * 16 14 12 36 36 H 1.08005 * 120.36659 * 0.02562 * 18 17 16 37 37 H 1.08001 * 119.51077 * 180.02562 * 19 18 17 38 38 H 1.09006 * 109.47058 * 179.72909 * 25 24 22 39 39 H 1.08995 * 109.47242 * 299.72766 * 25 24 22 40 40 H 1.08995 * 109.47071 * 59.73078 * 25 24 22 41 41 H 1.09003 * 109.47404 * 276.01233 * 26 24 22 42 42 H 1.09004 * 109.47372 * 36.01123 * 26 24 22 43 43 H 1.09003 * 109.47551 * 156.01162 * 26 24 22 44 44 H 1.08000 * 120.51552 * 180.25446 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8299 2.6034 8 14 2.3224 -1.1192 4.0081 9 1 3.1472 -2.2860 3.6042 10 1 3.1471 -0.1854 4.8162 11 1 1.1676 -1.5862 4.8167 12 7 2.0184 -0.6907 -1.1960 13 6 1.6645 -2.0934 -1.4278 14 6 2.7933 -0.0359 -2.0832 15 8 3.0874 1.1280 -1.8907 16 7 3.2422 -0.6712 -3.1838 17 6 4.1218 -0.0243 -4.0530 18 6 5.1202 -0.7339 -4.7173 19 6 5.9738 -0.0607 -5.5718 20 7 5.8524 1.2352 -5.7687 21 6 4.9196 1.9525 -5.1530 22 6 4.8292 3.4099 -5.4046 23 8 4.0591 4.0916 -4.7576 24 7 5.6014 3.9795 -6.3511 25 6 5.5972 5.4345 -6.5220 26 6 6.4494 3.1441 -7.2051 27 6 4.0232 1.3475 -4.2785 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.7081 1.1611 3.4843 32 1 2.4157 -2.7378 -0.9713 33 1 0.6905 -2.3003 -0.9844 34 1 1.6239 -2.2855 -2.4999 35 1 2.9539 -1.5780 -3.3718 36 1 5.2256 -1.7983 -4.5672 37 1 6.7488 -0.6069 -6.0890 38 1 6.2814 5.7080 -7.3254 39 1 4.5904 5.7680 -6.7731 40 1 5.9170 5.9101 -5.5949 41 1 7.3878 2.9345 -6.6917 42 1 5.9363 2.2070 -7.4212 43 1 6.6550 3.6692 -8.1380 44 1 3.2627 1.9317 -3.7818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444388093.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:31 Heat of formation + Delta-G solvation = 10.542882 kcal Electronic energy + Delta-G solvation = -27017.223130 eV Core-core repulsion = 23164.482850 eV Total energy + Delta-G solvation = -3852.740279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.98813 -39.84025 -38.72156 -35.98697 -35.55471 -34.82600 -32.94279 -31.54842 -30.81599 -29.04227 -28.10691 -26.54518 -26.32071 -25.24782 -23.77111 -23.71023 -21.54664 -20.01703 -19.43800 -18.04183 -17.43365 -16.84046 -16.33384 -15.97945 -15.87763 -15.86888 -15.45497 -15.20044 -14.65189 -14.22893 -14.06488 -13.91865 -13.60135 -13.28588 -12.96748 -12.81682 -12.73323 -12.67733 -12.53282 -12.20223 -11.91502 -11.69413 -11.59506 -11.12008 -10.91446 -10.77315 -10.72820 -10.28906 -10.24910 -10.20057 -9.69890 -9.30442 -9.21041 -9.08855 -8.72869 -8.53612 -8.46258 -7.68521 -6.09891 -4.18149 0.66071 1.23295 2.72707 2.81884 3.01482 3.24497 3.32881 3.35475 3.61490 3.92042 4.06233 4.27013 4.41034 4.62876 4.90349 4.98608 5.06135 5.14553 5.21138 5.25701 5.34176 5.43332 5.54122 5.64511 5.67071 5.77011 5.89195 5.92729 6.11223 6.15965 6.31480 6.48969 6.62453 6.75811 6.84065 6.91236 7.05991 7.22163 7.38419 7.63533 7.69332 7.72428 8.00567 8.15187 8.15907 8.49822 8.81545 9.05282 9.48552 10.95561 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018552 B = 0.003011 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.906368 B = 9295.621648 C = 9948.333747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.271 3.729 3 H 0.067 0.933 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.599 5.599 13 C 0.086 3.914 14 C 0.693 3.307 15 O -0.568 6.568 16 N -0.690 5.690 17 C 0.219 3.781 18 C -0.189 4.189 19 C 0.109 3.891 20 N -0.476 5.476 21 C 0.088 3.912 22 C 0.569 3.431 23 O -0.521 6.521 24 N -0.610 5.610 25 C 0.090 3.910 26 C 0.092 3.908 27 C -0.111 4.111 28 H 0.013 0.987 29 H 0.030 0.970 30 H 0.096 0.904 31 H 0.264 0.736 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.407 0.593 36 H 0.140 0.860 37 H 0.163 0.837 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.093 0.907 43 H 0.055 0.945 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.516 -3.561 -20.517 22.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.171 3.829 3 H 0.085 0.915 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.334 5.334 13 C -0.058 4.058 14 C 0.395 3.605 15 O -0.444 6.444 16 N -0.340 5.340 17 C 0.113 3.887 18 C -0.213 4.213 19 C -0.050 4.050 20 N -0.190 5.190 21 C -0.049 4.049 22 C 0.355 3.645 23 O -0.395 6.395 24 N -0.344 5.344 25 C -0.053 4.053 26 C -0.051 4.051 27 C -0.135 4.135 28 H 0.032 0.968 29 H 0.049 0.951 30 H 0.114 0.886 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.245 0.755 36 H 0.158 0.842 37 H 0.181 0.819 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.112 0.888 43 H 0.073 0.927 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 8.679 -1.768 -20.300 22.148 hybrid contribution -0.282 -1.634 1.420 2.183 sum 8.397 -3.402 -18.879 20.941 Atomic orbital electron populations 1.22123 0.98062 0.99394 1.01084 1.18966 0.90763 0.94401 0.78763 0.91548 1.21338 1.31947 1.13077 0.90216 0.92235 1.24893 0.94932 0.94972 0.98983 1.69886 1.36240 1.22524 1.23768 0.86422 0.78586 0.79538 0.82713 1.19871 1.20867 1.20916 1.47655 1.50380 1.11626 1.23709 1.21536 1.02406 0.83402 0.98487 1.16038 0.79930 0.85150 0.79429 1.90936 1.61877 1.14989 1.76643 1.42950 1.48418 1.18831 1.23812 1.17735 0.89451 0.91953 0.89537 1.22078 0.95534 1.01997 1.01665 1.22547 0.97233 0.89955 0.95294 1.67978 1.20447 1.07834 1.22765 1.20822 0.94044 0.93913 0.96077 1.17941 0.80385 0.86177 0.79958 1.90835 1.37267 1.63077 1.48345 1.47594 1.43854 1.07567 1.35348 1.21658 1.02328 0.79368 1.01939 1.22137 0.95079 0.95485 0.92385 1.22372 1.00681 0.94345 0.96066 0.96816 0.95074 0.88572 0.92643 0.93015 0.90149 0.93710 0.75478 0.84233 0.81943 0.90637 0.91995 0.92053 0.92302 0.88834 0.92667 0.81596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.95 37.16 0.33 -3.16 16 2 C 0.27 6.87 2.64 -69.08 -0.18 6.69 16 3 H 0.07 1.98 6.90 -51.93 -0.36 1.62 16 4 C -0.53 -14.12 8.37 -34.44 -0.29 -14.41 16 5 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.07 11.32 55.43 0.63 -24.44 16 8 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.60 -12.48 2.75 -181.01 -0.50 -12.98 16 13 C 0.09 1.33 9.48 59.85 0.57 1.90 16 14 C 0.69 14.38 8.14 -86.92 -0.71 13.68 16 15 O -0.57 -14.31 13.14 5.30 0.07 -14.24 16 16 N -0.69 -10.55 5.22 -14.08 -0.07 -10.62 16 17 C 0.22 3.25 6.34 -83.51 -0.53 2.72 16 18 C -0.19 -2.03 10.06 -39.15 -0.39 -2.42 16 19 C 0.11 1.08 11.17 -17.62 -0.20 0.88 16 20 N -0.48 -5.84 6.16 -9.88 -0.06 -5.90 16 21 C 0.09 1.37 6.56 -83.05 -0.55 0.82 16 22 C 0.57 9.29 7.65 -12.18 -0.09 9.19 16 23 O -0.52 -10.44 16.35 5.36 0.09 -10.36 16 24 N -0.61 -7.57 3.27 -190.52 -0.62 -8.20 16 25 C 0.09 0.89 10.17 59.85 0.61 1.50 16 26 C 0.09 0.84 9.10 59.85 0.54 1.38 16 27 C -0.11 -1.92 8.29 -38.85 -0.32 -2.25 16 28 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.03 0.66 6.66 -51.93 -0.35 0.32 16 30 H 0.10 2.51 6.07 -51.93 -0.32 2.19 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.27 6.43 -51.93 -0.33 0.93 16 34 H 0.04 0.51 6.30 -51.93 -0.33 0.18 16 35 H 0.41 4.68 6.52 -40.82 -0.27 4.41 16 36 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.07 0.49 7.72 -51.93 -0.40 0.09 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.54 7.99 -51.93 -0.41 0.12 16 42 H 0.09 0.90 5.79 -51.93 -0.30 0.60 16 43 H 0.05 0.36 7.80 -51.93 -0.41 -0.04 16 44 H 0.17 3.48 5.90 -52.49 -0.31 3.17 16 LS Contribution 360.02 15.07 5.43 5.43 Total: -1.00 -34.85 360.02 -7.22 -42.06 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.85 Total: 5.09 kcal Atomic # 6 Polarization: 19.48 SS G_CDS: -1.30 Total: 18.18 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: -0.63 Total: -62.14 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: 0.16 Total: -24.60 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.85 -7.22 -42.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444388093.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.607 kcal (2) G-P(sol) polarization free energy of solvation -34.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds