Wall clock time and date at job start Tue Mar 31 2020 12:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99912 * 2 1 4 4 C 1.53005 * 110.43004 * 305.50396 * 3 2 1 5 5 N 1.46494 * 109.47340 * 296.85428 * 4 3 2 6 6 S 1.65599 * 120.00153 * 164.93635 * 5 4 3 7 7 O 1.42095 * 106.40254 * 178.53935 * 6 5 4 8 8 O 1.42100 * 106.40027 * 311.46265 * 6 5 4 9 9 N 1.65600 * 107.21586 * 64.99996 * 6 5 4 10 10 C 1.46503 * 119.99907 * 90.00550 * 9 6 5 11 11 C 1.46498 * 119.99869 * 269.99841 * 9 6 5 12 12 H 1.08998 * 109.47271 * 0.02562 * 11 9 6 13 13 C 1.53007 * 109.46941 * 120.00330 * 11 9 6 14 14 C 1.50708 * 109.47372 * 240.00041 * 11 9 6 15 15 H 1.07998 * 119.99546 * 0.02562 * 14 11 9 16 16 C 1.37873 * 120.00138 * 180.02562 * 14 11 9 17 17 N 1.31518 * 119.99928 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 120.00190 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47086 * 59.99576 * 18 16 14 20 20 H 1.48498 * 109.47368 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46977 * 300.00102 * 18 16 14 22 22 C 1.54886 * 110.48489 * 182.96477 * 3 2 1 23 23 C 1.55238 * 102.58905 * 279.18736 * 22 3 2 24 24 C 1.54268 * 104.22650 * 322.08107 * 23 22 3 25 25 C 1.53873 * 106.60148 * 23.61401 * 24 23 22 26 26 H 1.09000 * 109.47433 * 64.01968 * 1 2 3 27 27 H 1.08994 * 109.47202 * 184.02545 * 1 2 3 28 28 H 1.09005 * 109.47061 * 304.02217 * 1 2 3 29 29 H 1.08992 * 109.47112 * 56.85849 * 4 3 2 30 30 H 1.09004 * 109.46164 * 176.85510 * 4 3 2 31 31 H 0.97003 * 120.00133 * 344.93619 * 5 4 3 32 32 H 1.09001 * 109.47153 * 89.99838 * 10 9 6 33 33 H 1.08996 * 109.46778 * 209.99320 * 10 9 6 34 34 H 1.08997 * 109.47014 * 329.99791 * 10 9 6 35 35 H 1.09006 * 109.46826 * 59.99890 * 13 11 9 36 36 H 1.08996 * 109.46910 * 179.97438 * 13 11 9 37 37 H 1.08998 * 109.47046 * 300.00202 * 13 11 9 38 38 H 0.97002 * 120.00093 * 180.02562 * 17 16 14 39 39 H 1.09006 * 110.75493 * 37.58110 * 22 3 2 40 40 H 1.09001 * 110.75724 * 160.94418 * 22 3 2 41 41 H 1.08999 * 110.46578 * 203.39844 * 23 22 3 42 42 H 1.08996 * 110.47160 * 80.77388 * 23 22 3 43 43 H 1.08997 * 110.03456 * 264.32593 * 24 23 22 44 44 H 1.09008 * 110.02850 * 142.89698 * 24 23 22 45 45 H 1.08993 * 110.03263 * 240.71152 * 25 24 23 46 46 H 1.09000 * 110.03162 * 119.27620 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.4668 2.1321 -1.1672 5 7 1.8563 1.5053 -2.4327 6 16 1.1111 1.9525 -3.8422 7 8 1.7270 1.1998 -4.8782 8 8 -0.2861 1.9220 -3.5846 9 7 1.5006 3.5377 -4.1210 10 6 2.6947 3.8723 -4.9011 11 6 0.6510 4.6055 -3.5878 12 1 -0.1826 4.1668 -3.0394 13 6 1.4723 5.4883 -2.6459 14 6 0.1210 5.4409 -4.7246 15 1 0.3898 5.2002 -5.7425 16 6 -0.7070 6.5123 -4.4651 17 7 -1.0339 6.8057 -3.2255 18 14 -1.3645 7.5474 -5.8743 19 1 -2.1622 6.6905 -6.7877 20 1 -2.2245 8.6305 -5.3336 21 1 -0.2287 8.1445 -6.6218 22 6 3.5544 1.2114 -0.0750 23 6 3.9475 0.9179 1.3978 24 6 2.9681 1.7722 2.2290 25 6 1.7363 2.0186 1.3403 26 1 -0.3634 0.4502 -0.9238 27 1 -0.3633 -1.0251 0.0721 28 1 -0.3633 0.5750 0.8518 29 1 0.3797 2.1786 -1.1043 30 1 1.8770 3.1409 -1.1199 31 1 2.5509 0.8282 -2.4450 32 1 2.4316 3.9411 -5.9566 33 1 3.0932 4.8288 -4.5630 34 1 3.4474 3.0961 -4.7640 35 1 2.3062 5.9269 -3.1940 36 1 0.8404 6.2829 -2.2495 37 1 1.8557 4.8841 -1.8237 38 1 -1.6167 7.5593 -3.0429 39 1 3.8603 0.3948 -0.7292 40 1 3.9833 2.1563 -0.4087 41 1 4.9762 1.2252 1.5862 42 1 3.8170 -0.1404 1.6236 43 1 3.4331 2.7216 2.4942 44 1 2.6761 1.2341 3.1309 45 1 1.6036 3.0875 1.1742 46 1 0.8467 1.6000 1.8108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451611707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:25 Heat of formation + Delta-G solvation = -127.683683 kcal Electronic energy + Delta-G solvation = -27564.093439 eV Core-core repulsion = 23808.510406 eV Total energy + Delta-G solvation = -3755.583033 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.82056 -36.66481 -36.17205 -35.66664 -35.19608 -34.44347 -32.58806 -29.17338 -29.05349 -28.90179 -26.54803 -25.60074 -25.16943 -24.22165 -20.86490 -20.69388 -19.86729 -18.67079 -17.40499 -17.02626 -16.70491 -16.28085 -16.01411 -15.32409 -15.06291 -14.91317 -14.70104 -14.34753 -14.00479 -13.58710 -13.19406 -13.08371 -12.96337 -12.78715 -12.24327 -12.02348 -11.94274 -11.72768 -11.47021 -11.40897 -11.37515 -11.34855 -11.29163 -11.23063 -11.08587 -10.96629 -10.81658 -10.56964 -10.47654 -10.45768 -10.30484 -10.02613 -9.50476 -9.28682 -9.20000 -8.46609 -7.98600 -6.09214 -4.15314 1.22921 3.29573 3.33772 3.37345 3.50251 3.74168 4.13684 4.38558 4.40979 4.44403 4.63048 4.97940 5.09024 5.19247 5.22369 5.28986 5.33395 5.41133 5.48188 5.51730 5.58915 5.63727 5.66443 5.78605 5.82366 5.89666 5.91458 5.98850 6.00601 6.14312 6.15225 6.25362 6.39007 6.61336 6.74052 6.76943 6.96563 7.15323 7.27064 7.48525 7.61412 7.77004 8.01710 8.25805 8.86661 9.50560 10.96491 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.004412 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.631063 B = 6344.724314 C = 6893.163306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.369 6.369 3 C 0.107 3.893 4 C 0.096 3.904 5 N -1.127 6.127 6 S 2.780 3.220 7 O -0.997 6.997 8 O -0.976 6.976 9 N -0.991 5.991 10 C 0.111 3.889 11 C 0.267 3.733 12 H 0.058 0.942 13 C -0.150 4.150 14 C -0.519 4.519 15 H 0.062 0.938 16 C 0.064 3.936 17 N -0.891 5.891 18 Si 0.898 3.102 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.110 4.110 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.150 4.150 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.410 0.590 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.034 0.966 36 H 0.093 0.907 37 H 0.011 0.989 38 H 0.263 0.737 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.033 -8.901 10.341 16.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.288 6.288 3 C 0.066 3.934 4 C -0.030 4.030 5 N -0.886 5.886 6 S 2.788 3.212 7 O -0.981 6.981 8 O -0.959 6.959 9 N -0.834 5.834 10 C -0.035 4.035 11 C 0.164 3.836 12 H 0.076 0.924 13 C -0.209 4.209 14 C -0.559 4.559 15 H 0.080 0.920 16 C -0.138 4.138 17 N -0.530 5.530 18 Si 0.726 3.274 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.147 4.147 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.188 4.188 26 H 0.073 0.927 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.244 0.756 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.112 0.888 37 H 0.030 0.970 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.098 0.902 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.310 -9.348 9.904 15.954 hybrid contribution -0.142 0.877 -0.498 1.019 sum 8.168 -8.471 9.406 15.065 Atomic orbital electron populations 1.22872 0.81230 1.02587 1.01080 1.87905 1.19670 1.26417 1.94847 1.22534 0.94304 0.83552 0.93003 1.21896 1.01138 0.96752 0.83262 1.56044 1.56008 1.54061 1.22515 1.01937 0.73671 0.72952 0.72608 1.93544 1.78440 1.71323 1.54809 1.93584 1.30602 1.86456 1.85284 1.57697 1.36272 1.23936 1.65506 1.21122 0.85850 1.00900 0.95650 1.18727 0.87465 0.84023 0.93349 0.92441 1.22183 1.00003 1.01453 0.97269 1.21295 1.29125 1.12295 0.93187 0.92024 1.24893 0.95866 0.97228 0.95830 1.69838 1.36035 1.29011 1.18124 0.86558 0.78922 0.79680 0.82253 1.20165 1.21223 1.20246 1.22567 0.91923 1.02753 0.97463 1.22380 0.98670 1.00297 0.94471 1.22049 0.95449 0.99930 0.98184 1.22737 0.99213 1.01484 0.95371 0.92725 0.89787 0.93771 0.90000 0.90098 0.75642 0.93355 0.91021 0.93297 0.94684 0.88813 0.97012 0.92665 0.90512 0.89583 0.91670 0.91298 0.91690 0.91920 0.90201 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.18 101.05 1.03 1.25 16 2 O -0.37 -4.76 10.35 -35.23 -0.36 -5.12 16 3 C 0.11 1.27 0.55 -88.96 -0.05 1.22 16 4 C 0.10 1.36 4.67 -4.04 -0.02 1.35 16 5 N -1.13 -16.90 5.87 -10.62 -0.06 -16.97 16 6 S 2.78 54.48 6.09 -107.50 -0.66 53.83 16 7 O -1.00 -20.98 17.21 -57.17 -0.98 -21.97 16 8 O -0.98 -22.57 16.17 -57.17 -0.92 -23.49 16 9 N -0.99 -20.23 3.12 -115.85 -0.36 -20.59 16 10 C 0.11 1.97 9.53 59.85 0.57 2.54 16 11 C 0.27 6.34 2.62 -69.08 -0.18 6.16 16 12 H 0.06 1.51 6.91 -51.93 -0.36 1.15 16 13 C -0.15 -3.22 8.95 37.16 0.33 -2.89 16 14 C -0.52 -13.81 8.37 -34.44 -0.29 -14.10 16 15 H 0.06 1.64 7.65 -52.49 -0.40 1.24 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -24.28 11.32 55.43 0.63 -23.65 16 18 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 C -0.11 -1.12 5.37 -24.55 -0.13 -1.25 16 23 C -0.12 -1.08 6.82 -24.88 -0.17 -1.25 16 24 C -0.12 -1.07 6.80 -25.61 -0.17 -1.24 16 25 C -0.15 -1.57 5.94 -25.61 -0.15 -1.72 16 26 H 0.05 0.76 6.59 -51.93 -0.34 0.42 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.47 6.40 -51.93 -0.33 0.14 16 29 H 0.08 1.28 6.10 -51.93 -0.32 0.96 16 30 H 0.08 1.13 6.11 -51.93 -0.32 0.81 16 31 H 0.41 5.33 7.68 -34.47 -0.26 5.07 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.21 6.43 -51.93 -0.33 0.88 16 34 H 0.05 0.73 7.79 -51.93 -0.40 0.32 16 35 H 0.03 0.72 6.66 -51.93 -0.35 0.37 16 36 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 37 H 0.01 0.20 6.18 -51.93 -0.32 -0.12 16 38 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.08 0.77 7.71 -51.93 -0.40 0.37 16 40 H 0.09 0.83 8.06 -51.93 -0.42 0.41 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 45 H 0.08 0.83 7.79 -51.93 -0.40 0.43 16 46 H 0.07 0.76 6.30 -51.93 -0.33 0.43 16 LS Contribution 363.66 15.07 5.48 5.48 Total: -1.00 -31.46 363.66 -8.87 -40.33 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.27 Total: 4.52 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 0.67 Total: -8.32 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: 0.20 Total: -61.21 kcal Atomic # 8 Polarization: -48.31 SS G_CDS: -2.27 Total: -50.58 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 54.48 SS G_CDS: -0.66 Total: 53.83 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.46 -8.87 -40.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451611707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.351 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds