Wall clock time and date at job start Tue Mar 31 2020 13:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47550 * 2 1 4 4 C 1.46509 * 119.99833 * 293.70199 * 3 2 1 5 5 C 1.50689 * 109.46780 * 274.99783 * 4 3 2 6 6 H 1.08006 * 120.00554 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99997 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99902 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99804 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47207 * 89.99554 * 9 7 5 11 11 H 1.48502 * 109.47246 * 210.00224 * 9 7 5 12 12 H 1.48505 * 109.46954 * 330.00007 * 9 7 5 13 13 S 1.65596 * 120.00097 * 113.69709 * 3 2 1 14 14 O 1.42102 * 106.39991 * 150.33823 * 13 3 2 15 15 O 1.42088 * 106.40465 * 17.41906 * 13 3 2 16 16 N 1.65602 * 107.22014 * 263.87571 * 13 3 2 17 17 C 1.46502 * 120.00103 * 62.67574 * 16 13 3 18 18 C 1.52994 * 109.47038 * 164.95227 * 17 16 13 19 19 O 1.42891 * 110.02125 * 300.72808 * 18 17 16 20 20 C 1.42905 * 113.99847 * 305.21324 * 19 18 17 21 21 C 1.54274 * 110.02751 * 179.33747 * 18 17 16 22 22 C 1.54970 * 104.15810 * 217.13692 * 21 18 17 23 23 C 1.54888 * 102.77843 * 37.88799 * 22 21 18 24 24 C 1.53878 * 110.03286 * 62.12424 * 18 17 16 25 25 H 1.09004 * 109.47627 * 185.08992 * 1 2 3 26 26 H 1.09007 * 109.47200 * 305.08830 * 1 2 3 27 27 H 1.08994 * 109.47343 * 65.08796 * 1 2 3 28 28 H 1.09006 * 109.47050 * 239.99573 * 2 1 3 29 29 H 1.09003 * 109.46641 * 119.99884 * 2 1 3 30 30 H 1.08998 * 109.46711 * 34.99534 * 4 3 2 31 31 H 1.08999 * 109.46878 * 154.99524 * 4 3 2 32 32 H 0.96999 * 119.99637 * 180.02562 * 8 7 5 33 33 H 0.97001 * 119.99981 * 242.95117 * 16 13 3 34 34 H 1.09002 * 109.46875 * 284.95373 * 17 16 13 35 35 H 1.09002 * 109.46652 * 44.95238 * 17 16 13 36 36 H 1.08998 * 109.46985 * 63.96137 * 20 19 18 37 37 H 1.09002 * 109.47450 * 183.95969 * 20 19 18 38 38 H 1.08997 * 109.47096 * 303.96174 * 20 19 18 39 39 H 1.08997 * 110.48454 * 335.78291 * 21 18 17 40 40 H 1.08997 * 110.48322 * 98.42924 * 21 18 17 41 41 H 1.09000 * 110.71714 * 279.57420 * 22 21 18 42 42 H 1.08994 * 110.76276 * 156.22316 * 22 21 18 43 43 H 1.08995 * 110.48898 * 203.40695 * 23 22 21 44 44 H 1.09003 * 110.48861 * 80.75709 * 23 22 21 45 45 H 1.09004 * 110.02766 * 238.56507 * 24 18 17 46 46 H 1.09000 * 110.03275 * 359.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 1.7818 2.2418 -1.1618 5 6 2.8633 2.0119 -2.1857 6 1 3.6482 1.2961 -1.9908 7 6 2.8503 2.7148 -3.3718 8 7 3.7939 2.5138 -4.2656 9 14 1.4924 3.9524 -3.7093 10 1 1.9050 5.2885 -3.2097 11 1 1.2418 4.0261 -5.1712 12 1 0.2506 3.5263 -3.0151 13 16 2.8378 1.9696 1.3132 14 8 3.7364 2.9527 0.8178 15 8 3.2596 0.8386 2.0629 16 7 1.7395 2.7730 2.2568 17 6 0.6171 2.0459 2.8550 18 6 -0.0164 2.9008 3.9544 19 8 0.9540 3.2038 4.9586 20 6 1.5938 2.0532 5.5145 21 6 -1.2111 2.1535 4.5823 22 6 -2.2500 3.2684 4.8637 23 6 -2.0935 4.2002 3.6364 24 6 -0.5770 4.2017 3.3535 25 1 -0.3634 -1.0236 0.0912 26 1 -0.3634 0.5908 0.8410 27 1 -0.3634 0.4329 -0.9320 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 0.8117 2.0041 -1.5983 31 1 1.7935 3.2858 -0.8489 32 1 3.7849 3.0086 -5.0999 33 1 1.8370 3.7259 2.4101 34 1 -0.1268 1.8310 2.0878 35 1 0.9773 1.1108 3.2839 36 1 2.1664 1.5454 4.7384 37 1 2.2639 2.3622 6.3169 38 1 0.8394 1.3745 5.9123 39 1 -1.6155 1.4235 3.8812 40 1 -0.9115 1.6671 5.5106 41 1 -2.0070 3.7984 5.7846 42 1 -3.2576 2.8551 4.9089 43 1 -2.4380 5.2064 3.8749 44 1 -2.6404 3.8011 2.7821 45 1 -0.1094 5.0642 3.8285 46 1 -0.3973 4.2242 2.2786 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451616342.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:00 Heat of formation + Delta-G solvation = -126.567197 kcal Electronic energy + Delta-G solvation = -27485.016956 eV Core-core repulsion = 23729.482338 eV Total energy + Delta-G solvation = -3755.534618 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.01730 -36.70803 -36.24281 -35.88152 -35.22395 -34.53935 -32.56718 -30.20815 -29.17424 -28.99636 -27.27560 -26.74618 -24.33677 -23.04774 -21.46047 -20.97073 -19.87350 -18.80078 -17.59787 -17.14677 -16.95777 -16.63266 -16.01651 -15.69636 -15.33070 -15.07802 -14.71518 -14.25420 -14.08117 -13.89839 -13.48889 -13.35134 -13.12853 -12.75152 -12.51872 -12.30307 -12.02221 -11.99383 -11.92326 -11.70902 -11.56580 -11.44601 -11.37967 -11.30186 -11.17279 -11.14092 -10.90706 -10.81496 -10.62791 -10.58009 -10.39417 -10.14039 -9.66222 -9.55468 -9.33128 -8.58925 -8.14866 -6.07577 -4.06321 1.14564 3.25651 3.30577 3.32137 3.38571 3.64858 4.06007 4.26472 4.30901 4.37881 4.49492 4.84806 4.96141 4.99455 5.11059 5.18431 5.22222 5.23900 5.25868 5.32617 5.40892 5.42771 5.55016 5.62197 5.63039 5.63222 5.68277 5.74427 5.79271 5.80050 5.86450 5.96699 6.06798 6.11149 6.21862 6.47457 6.51533 6.73665 7.00818 7.09314 7.19391 7.43541 7.58615 8.49923 8.98062 9.51398 11.06179 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.004654 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.070044 B = 6015.350471 C = 6624.469349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.116 3.884 3 N -0.986 5.986 4 C 0.229 3.771 5 C -0.529 4.529 6 H 0.078 0.922 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.871 3.129 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.265 1.265 13 S 2.780 3.220 14 O -0.960 6.960 15 O -0.996 6.996 16 N -1.128 6.128 17 C 0.096 3.904 18 C 0.109 3.891 19 O -0.370 6.370 20 C 0.018 3.982 21 C -0.149 4.149 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.118 4.118 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.025 0.975 32 H 0.264 0.736 33 H 0.415 0.585 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.043 0.957 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.165 -0.824 18.336 23.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.011 4.011 3 N -0.827 5.827 4 C 0.106 3.894 5 C -0.568 4.568 6 H 0.096 0.904 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.698 3.302 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.190 1.190 13 S 2.788 3.212 14 O -0.944 6.944 15 O -0.980 6.980 16 N -0.888 5.888 17 C -0.032 4.032 18 C 0.068 3.932 19 O -0.289 6.289 20 C -0.078 4.078 21 C -0.188 4.188 22 C -0.157 4.157 23 C -0.161 4.161 24 C -0.155 4.155 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.249 0.751 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.125 -0.888 18.347 22.576 hybrid contribution -0.962 0.817 -0.485 1.352 sum -14.087 -0.071 17.862 22.749 Atomic orbital electron populations 1.22244 0.96936 1.01333 1.02350 1.21175 0.93616 0.82816 1.03463 1.57487 1.74598 1.19750 1.30866 1.19376 0.97898 0.88326 0.83810 1.21366 1.10533 1.24676 1.00214 0.90429 1.24869 0.95714 0.96483 0.95923 1.69896 1.33133 1.41927 1.08407 0.86938 0.82844 0.82594 0.77822 1.19865 1.20993 1.18999 1.01998 0.73388 0.73234 0.72574 1.93662 1.60452 1.60973 1.79277 1.93515 1.80286 1.52497 1.71662 1.56125 1.43587 1.21770 1.67292 1.21943 0.89648 0.95564 0.96009 1.22367 0.88083 0.95467 0.87271 1.87975 1.55086 1.31245 1.54560 1.22878 0.96858 0.89372 0.98689 1.22974 0.95840 0.98448 1.01493 1.22440 0.98453 0.96304 0.98461 1.22356 0.95513 1.00028 0.98164 1.22216 0.95422 0.96507 1.01361 0.92141 0.93102 0.91791 0.90188 0.90120 0.94748 0.95669 0.92559 0.75097 0.90560 0.90396 0.92821 0.89725 0.93873 0.90355 0.90587 0.91234 0.91454 0.91298 0.91278 0.90091 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 9.90 37.16 0.37 -1.84 16 2 C 0.12 1.91 6.58 -4.05 -0.03 1.88 16 3 N -0.99 -19.36 2.92 -115.66 -0.34 -19.70 16 4 C 0.23 5.26 4.06 -5.19 -0.02 5.24 16 5 C -0.53 -14.96 9.94 -34.44 -0.34 -15.30 16 6 H 0.08 2.43 8.06 -52.48 -0.42 2.00 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 9 Si 0.87 20.91 27.47 -169.99 -4.67 16.24 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -5.85 6.54 56.52 0.37 -5.48 16 13 S 2.78 53.65 6.04 -107.50 -0.65 53.00 16 14 O -0.96 -22.90 17.34 -57.18 -0.99 -23.89 16 15 O -1.00 -20.01 16.06 -57.18 -0.92 -20.93 16 16 N -1.13 -16.30 5.63 -10.61 -0.06 -16.36 16 17 C 0.10 1.12 4.27 -4.04 -0.02 1.10 16 18 C 0.11 1.13 0.69 -89.50 -0.06 1.06 16 19 O -0.37 -4.33 10.15 -35.23 -0.36 -4.69 16 20 C 0.02 0.19 10.16 101.05 1.03 1.22 16 21 C -0.15 -1.24 5.89 -25.02 -0.15 -1.38 16 22 C -0.12 -0.90 6.91 -24.70 -0.17 -1.07 16 23 C -0.12 -0.98 6.83 -25.07 -0.17 -1.15 16 24 C -0.12 -1.15 5.61 -25.61 -0.14 -1.29 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.58 5.77 -51.93 -0.30 0.28 16 27 H 0.06 0.91 7.12 -51.93 -0.37 0.54 16 28 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.08 1.24 6.70 -51.93 -0.35 0.89 16 30 H 0.03 0.75 5.94 -51.93 -0.31 0.44 16 31 H 0.03 0.58 7.21 -51.93 -0.37 0.21 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.42 5.59 7.98 -34.47 -0.27 5.31 16 34 H 0.08 0.81 5.80 -51.93 -0.30 0.51 16 35 H 0.08 0.91 6.33 -51.93 -0.33 0.58 16 36 H 0.05 0.64 6.64 -51.93 -0.34 0.30 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.04 0.37 6.30 -51.93 -0.33 0.04 16 39 H 0.08 0.58 7.85 -51.93 -0.41 0.17 16 40 H 0.08 0.60 6.21 -51.93 -0.32 0.28 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.81 7.95 -51.93 -0.41 0.40 16 46 H 0.08 0.83 7.34 -51.93 -0.38 0.45 16 LS Contribution 365.14 15.07 5.50 5.50 Total: -1.00 -34.72 365.14 -8.86 -43.58 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.35 Total: 3.54 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 0.20 Total: -9.54 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: 0.38 Total: -62.81 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -2.27 Total: -49.51 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Atomic # 16 Polarization: 53.65 SS G_CDS: -0.65 Total: 53.00 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.72 -8.86 -43.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451616342.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.988 kcal (2) G-P(sol) polarization free energy of solvation -34.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds