Wall clock time and date at job start Tue Mar 31 2020 13:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.46702 * 2 1 4 4 C 1.42905 * 113.99822 * 179.97438 * 3 2 1 5 5 H 1.09002 * 110.43473 * 29.29872 * 4 3 2 6 6 C 1.54892 * 110.48706 * 266.75768 * 4 3 2 7 7 C 1.54885 * 102.75046 * 203.24414 * 6 4 3 8 8 C 1.54273 * 104.19251 * 37.94548 * 7 6 4 9 9 C 1.53869 * 106.59806 * 336.38783 * 8 7 6 10 10 H 1.08998 * 110.03555 * 119.28911 * 9 8 7 11 11 N 1.46508 * 110.03394 * 240.71858 * 9 8 7 12 12 S 1.65596 * 119.99835 * 262.16871 * 11 9 8 13 13 O 1.42099 * 106.40337 * 178.53769 * 12 11 9 14 14 O 1.42100 * 106.40531 * 311.46115 * 12 11 9 15 15 N 1.65602 * 107.21909 * 64.99634 * 12 11 9 16 16 C 1.46500 * 119.99988 * 89.99788 * 15 12 11 17 17 C 1.46502 * 120.00235 * 269.99773 * 15 12 11 18 18 H 1.08995 * 109.47189 * 0.02562 * 17 15 12 19 19 C 1.52993 * 109.47416 * 239.99835 * 17 15 12 20 20 C 1.50710 * 109.46894 * 120.00041 * 17 15 12 21 21 H 1.08002 * 119.99845 * 0.02562 * 20 17 15 22 22 C 1.37878 * 119.99586 * 180.02562 * 20 17 15 23 23 N 1.31514 * 120.00114 * 359.97438 * 22 20 17 24 24 Si 1.86801 * 119.99515 * 179.97438 * 22 20 17 25 25 H 1.48507 * 109.47018 * 89.99911 * 24 22 20 26 26 H 1.48495 * 109.46957 * 209.99840 * 24 22 20 27 27 H 1.48495 * 109.47386 * 330.00046 * 24 22 20 28 28 H 1.08997 * 109.47108 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47341 * 299.99670 * 1 2 3 30 30 H 1.09006 * 109.47429 * 60.00348 * 1 2 3 31 31 H 1.09000 * 109.47341 * 240.00330 * 2 1 3 32 32 H 1.08997 * 109.47316 * 119.99773 * 2 1 3 33 33 H 1.08999 * 110.75198 * 321.56466 * 6 4 3 34 34 H 1.09002 * 110.75241 * 84.92809 * 6 4 3 35 35 H 1.08998 * 110.48617 * 156.61766 * 7 6 4 36 36 H 1.08993 * 110.48686 * 279.26817 * 7 6 4 37 37 H 1.09002 * 110.03192 * 95.67784 * 8 7 6 38 38 H 1.08998 * 110.02665 * 217.10399 * 8 7 6 39 39 H 0.97001 * 119.99811 * 82.16303 * 11 9 8 40 40 H 1.09009 * 109.47180 * 90.00047 * 16 15 12 41 41 H 1.08998 * 109.47381 * 210.00006 * 16 15 12 42 42 H 1.08998 * 109.47229 * 330.00233 * 16 15 12 43 43 H 1.09002 * 109.46875 * 60.00058 * 19 17 15 44 44 H 1.08998 * 109.47520 * 180.02562 * 19 17 15 45 45 H 1.09005 * 109.47456 * 300.00293 * 19 17 15 46 46 H 0.97002 * 119.99362 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8808 0.6022 -0.4989 6 6 3.9641 1.5850 1.4494 7 6 5.3334 2.2812 1.2508 8 6 5.0812 3.2951 0.1157 9 6 3.8715 2.7730 -0.6791 10 1 3.0608 3.5009 -0.6463 11 7 4.2579 2.5137 -2.0683 12 16 3.9457 3.6425 -3.2391 13 8 4.4643 3.1158 -4.4527 14 8 2.5869 4.0249 -3.0757 15 7 4.8540 4.9809 -2.8842 16 6 6.2088 5.1115 -3.4261 17 6 4.3028 6.0344 -2.0282 18 1 3.2922 5.7631 -1.7232 19 6 4.2656 7.3534 -2.8026 20 6 5.1701 6.1938 -0.8061 21 1 6.0447 5.5727 -0.6799 22 6 4.8471 7.1324 0.1508 23 7 3.7824 7.8889 -0.0033 24 14 5.9217 7.3294 1.6660 25 1 6.9809 8.3343 1.3943 26 1 5.0887 7.7846 2.8078 27 1 6.5500 6.0261 2.0001 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.3002 2.2035 2.0534 34 1 4.0929 0.6008 1.8997 35 1 5.6350 2.7967 2.1626 36 1 6.0905 1.5559 0.9532 37 1 4.8576 4.2764 0.5344 38 1 5.9557 3.3555 -0.5320 39 1 4.6966 1.6808 -2.3023 40 1 6.1673 5.6199 -4.3895 41 1 6.8220 5.6907 -2.7358 42 1 6.6450 4.1212 -3.5565 43 1 3.6383 7.2381 -3.6866 44 1 3.8559 8.1373 -2.1657 45 1 5.2764 7.6245 -3.1073 46 1 3.5550 8.5490 0.6702 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452064476.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:40 Heat of formation + Delta-G solvation = -132.059735 kcal Electronic energy + Delta-G solvation = -27858.353383 eV Core-core repulsion = 24102.580591 eV Total energy + Delta-G solvation = -3755.772793 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.08889 -36.69834 -36.37383 -36.03652 -35.17152 -33.03344 -32.60107 -31.14590 -29.05765 -27.49220 -26.51414 -25.46681 -25.17540 -22.78615 -20.81383 -20.74346 -20.06316 -18.83999 -17.34149 -16.84968 -16.55701 -16.35147 -16.14269 -15.48498 -15.02637 -14.51351 -14.45376 -13.62650 -13.46487 -13.33916 -13.27739 -12.93348 -12.68537 -12.57343 -12.14373 -11.96929 -11.93732 -11.74551 -11.59988 -11.42935 -11.37186 -11.21392 -11.09826 -11.01841 -10.96619 -10.87428 -10.74303 -10.46748 -10.40173 -10.18815 -10.14073 -9.98429 -9.56173 -9.21921 -8.91574 -8.47936 -7.92687 -6.09826 -4.16615 1.31700 3.22417 3.30617 3.31488 3.53604 3.79322 4.20482 4.33224 4.70888 4.83515 5.04696 5.08137 5.13930 5.20389 5.21914 5.33594 5.36884 5.59364 5.62420 5.75366 5.78285 5.81933 5.89669 5.92069 5.95090 6.08941 6.12492 6.20361 6.29575 6.35373 6.39255 6.67523 6.73236 6.90386 6.90983 7.03921 7.15264 7.31043 7.40350 7.56651 7.64074 7.79507 8.06035 8.26519 8.85104 9.47301 10.95138 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.006411 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.321180 B = 4366.649599 C = 5678.154459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.372 6.372 4 C 0.082 3.918 5 H 0.067 0.933 6 C -0.143 4.143 7 C -0.123 4.123 8 C -0.139 4.139 9 C 0.158 3.842 10 H 0.109 0.891 11 N -1.125 6.125 12 S 2.781 3.219 13 O -1.003 7.003 14 O -0.979 6.979 15 N -0.990 5.990 16 C 0.109 3.891 17 C 0.267 3.733 18 H 0.059 0.941 19 C -0.144 4.144 20 C -0.522 4.522 21 H 0.068 0.932 22 C 0.066 3.934 23 N -0.884 5.884 24 Si 0.888 3.112 25 H -0.282 1.282 26 H -0.287 1.287 27 H -0.271 1.271 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.404 0.596 40 H 0.041 0.959 41 H 0.079 0.921 42 H 0.048 0.952 43 H 0.011 0.989 44 H 0.092 0.908 45 H 0.031 0.969 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.527 -13.102 1.733 13.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.291 6.291 4 C 0.022 3.978 5 H 0.085 0.915 6 C -0.182 4.182 7 C -0.161 4.161 8 C -0.178 4.178 9 C 0.051 3.949 10 H 0.127 0.873 11 N -0.881 5.881 12 S 2.790 3.210 13 O -0.987 6.987 14 O -0.962 6.962 15 N -0.833 5.833 16 C -0.038 4.038 17 C 0.164 3.836 18 H 0.076 0.924 19 C -0.204 4.204 20 C -0.561 4.561 21 H 0.086 0.914 22 C -0.137 4.137 23 N -0.522 5.522 24 Si 0.716 3.284 25 H -0.208 1.208 26 H -0.213 1.213 27 H -0.196 1.196 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.236 0.764 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.030 0.970 44 H 0.110 0.890 45 H 0.051 0.949 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.580 -12.715 1.111 12.777 hybrid contribution 1.279 -0.391 1.093 1.727 sum 1.859 -13.107 2.204 13.420 Atomic orbital electron populations 1.21745 0.93925 1.01827 1.03453 1.22460 0.95612 0.84378 0.99525 1.88016 1.20601 1.25659 1.94853 1.23300 0.81076 0.97771 0.95611 0.91455 1.22932 0.97826 1.00732 0.96661 1.22308 0.95916 0.98246 0.99645 1.22915 0.97422 1.00825 0.96650 1.21373 0.97720 0.96133 0.79692 0.87323 1.56193 1.76849 1.33752 1.21356 1.01847 0.73900 0.72725 0.72537 1.93537 1.81425 1.80117 1.43668 1.93592 1.33636 1.82591 1.86363 1.57694 1.26106 1.35309 1.64148 1.21149 0.83802 1.00547 0.98254 1.18743 0.94878 0.82946 0.87064 0.92363 1.22048 0.98813 1.01455 0.98104 1.21418 1.11321 1.19660 1.03710 0.91358 1.24896 0.95089 0.95564 0.98153 1.69881 1.25095 1.22248 1.34952 0.86669 0.80405 0.78589 0.82757 1.20813 1.21273 1.19597 0.91482 0.91795 0.91622 0.93726 0.93748 0.90056 0.91870 0.91426 0.92216 0.87272 0.90661 0.76379 0.94060 0.90228 0.93331 0.97012 0.88969 0.94945 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.28 37.16 0.38 -1.23 16 2 C 0.06 0.67 6.51 37.16 0.24 0.91 16 3 O -0.37 -5.78 10.06 -35.23 -0.35 -6.13 16 4 C 0.08 1.16 3.03 -25.07 -0.08 1.08 16 5 H 0.07 0.82 7.52 -51.93 -0.39 0.43 16 6 C -0.14 -1.82 6.62 -24.74 -0.16 -1.98 16 7 C -0.12 -1.62 6.83 -25.07 -0.17 -1.79 16 8 C -0.14 -2.25 5.29 -25.61 -0.14 -2.39 16 9 C 0.16 2.64 3.36 -66.81 -0.22 2.42 16 10 H 0.11 2.18 7.47 -51.93 -0.39 1.79 16 11 N -1.12 -18.09 5.45 -3.94 -0.02 -18.11 16 12 S 2.78 55.05 6.07 -107.50 -0.65 54.39 16 13 O -1.00 -20.82 17.21 -57.17 -0.98 -21.80 16 14 O -0.98 -22.93 16.07 -57.17 -0.92 -23.85 16 15 N -0.99 -19.93 3.12 -115.85 -0.36 -20.29 16 16 C 0.11 1.89 9.28 59.85 0.56 2.45 16 17 C 0.27 6.22 2.62 -69.08 -0.18 6.04 16 18 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 19 C -0.14 -3.38 8.97 37.15 0.33 -3.05 16 20 C -0.52 -12.23 5.48 -34.44 -0.19 -12.42 16 21 H 0.07 1.53 6.17 -52.49 -0.32 1.21 16 22 C 0.07 1.63 5.30 -17.82 -0.09 1.54 16 23 N -0.88 -23.35 11.32 55.43 0.63 -22.72 16 24 Si 0.89 19.32 29.54 -169.99 -5.02 14.30 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 26 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.48 8.11 -51.93 -0.42 0.06 16 32 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.11 2.09 6.10 -51.93 -0.32 1.77 16 38 H 0.07 1.20 7.56 -51.93 -0.39 0.81 16 39 H 0.40 5.29 8.64 -34.47 -0.30 4.99 16 40 H 0.04 0.69 8.14 -51.92 -0.42 0.26 16 41 H 0.08 1.38 7.02 -51.93 -0.36 1.02 16 42 H 0.05 0.74 7.79 -51.93 -0.40 0.33 16 43 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 44 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 45 H 0.03 0.70 7.67 -51.93 -0.40 0.31 16 46 H 0.26 6.71 8.31 -40.82 -0.34 6.38 16 LS Contribution 370.48 15.07 5.58 5.58 Total: -1.00 -29.79 370.48 -9.56 -39.35 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -7.73 Total: 7.71 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 0.28 Total: -8.42 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.24 Total: -61.13 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -2.26 Total: -51.78 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Atomic # 16 Polarization: 55.05 SS G_CDS: -0.65 Total: 54.39 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.79 -9.56 -39.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452064476.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.711 kcal (2) G-P(sol) polarization free energy of solvation -29.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds