Wall clock time and date at job start Tue Mar 31 2020 13:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.47099 * 2 1 4 4 C 1.42897 * 113.99889 * 179.97438 * 3 2 1 5 5 H 1.08996 * 110.05594 * 28.58714 * 4 3 2 6 6 C 1.54094 * 110.16324 * 267.11755 * 4 3 2 7 7 C 1.54266 * 106.62303 * 240.88059 * 6 4 3 8 8 C 1.54893 * 104.19493 * 336.27925 * 7 6 4 9 9 C 1.54261 * 110.03300 * 150.00297 * 4 3 2 10 10 H 1.09000 * 110.48395 * 24.08709 * 9 4 3 11 11 N 1.46497 * 110.49037 * 261.57482 * 9 4 3 12 12 S 1.65599 * 120.00378 * 150.06465 * 11 9 4 13 13 O 1.42099 * 106.40038 * 48.15779 * 12 11 9 14 14 O 1.42101 * 106.40270 * 181.07456 * 12 11 9 15 15 N 1.65602 * 107.21841 * 294.61691 * 12 11 9 16 16 C 1.46494 * 119.99883 * 95.77587 * 15 12 11 17 17 C 1.46497 * 119.99964 * 275.77294 * 15 12 11 18 18 H 1.09001 * 109.47422 * 355.23995 * 17 15 12 19 19 C 1.53001 * 109.47070 * 115.23803 * 17 15 12 20 20 C 1.50699 * 109.47199 * 235.23935 * 17 15 12 21 21 H 1.07998 * 120.00151 * 359.97438 * 20 17 15 22 22 C 1.37878 * 120.00116 * 180.02562 * 20 17 15 23 23 N 1.31511 * 120.00100 * 179.97438 * 22 20 17 24 24 Si 1.86807 * 119.99800 * 359.97438 * 22 20 17 25 25 H 1.48503 * 109.46642 * 90.00289 * 24 22 20 26 26 H 1.48502 * 109.46922 * 209.99760 * 24 22 20 27 27 H 1.48498 * 109.47293 * 330.00087 * 24 22 20 28 28 H 1.08997 * 109.47205 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46968 * 299.99641 * 1 2 3 30 30 H 1.08999 * 109.47197 * 59.99168 * 1 2 3 31 31 H 1.08996 * 109.46905 * 240.00315 * 2 1 3 32 32 H 1.08997 * 109.47148 * 120.00056 * 2 1 3 33 33 H 1.09001 * 110.10732 * 121.53489 * 6 4 3 34 34 H 1.08999 * 109.92530 * 0.12200 * 6 4 3 35 35 H 1.08994 * 110.48785 * 217.60378 * 7 6 4 36 36 H 1.08995 * 110.48710 * 94.95436 * 7 6 4 37 37 H 1.08998 * 110.75667 * 279.63023 * 8 7 6 38 38 H 1.08996 * 110.75353 * 156.25281 * 8 7 6 39 39 H 0.97009 * 119.99737 * 330.07112 * 11 9 4 40 40 H 1.09007 * 109.47217 * 89.99785 * 16 15 12 41 41 H 1.08996 * 109.47023 * 209.99816 * 16 15 12 42 42 H 1.09002 * 109.47404 * 330.00072 * 16 15 12 43 43 H 1.08997 * 109.47002 * 66.16745 * 19 17 15 44 44 H 1.09002 * 109.46848 * 186.16734 * 19 17 15 45 45 H 1.09001 * 109.46769 * 306.16434 * 19 17 15 46 46 H 0.97003 * 119.99889 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8747 0.5933 -0.4890 6 6 3.9540 1.5748 1.4455 7 6 4.6763 2.9342 1.5467 8 6 5.0770 3.2611 0.0867 9 6 3.8589 2.7530 -0.7240 10 1 3.0533 3.4869 -0.7024 11 7 4.2482 2.4615 -2.1059 12 16 4.0376 3.6056 -3.2844 13 8 4.5710 4.8170 -2.7675 14 8 4.4816 3.0168 -4.4991 15 7 2.4074 3.8452 -3.4493 16 6 1.7534 4.9469 -2.7389 17 6 1.6191 2.9554 -4.3055 18 1 2.2839 2.2559 -4.8123 19 6 0.6181 2.1779 -3.4486 20 6 0.8751 3.7731 -5.3297 21 1 0.9787 4.8480 -5.3414 22 6 0.0613 3.1489 -6.2513 23 7 -0.5884 3.8625 -7.1447 24 14 -0.1184 1.2896 -6.2306 25 1 -1.2496 0.9115 -5.3459 26 1 -0.3833 0.8027 -7.6083 27 1 1.1347 0.6768 -5.7214 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.6518 0.7645 1.6568 34 1 3.1198 1.5421 2.1463 35 1 5.5624 2.8494 2.1756 36 1 4.0019 3.6963 1.9369 37 1 5.9811 2.7217 -0.1958 38 1 5.2089 4.3348 -0.0464 39 1 4.6294 1.5982 -2.3305 40 1 1.7634 5.8395 -3.3647 41 1 0.7229 4.6729 -2.5133 42 1 2.2875 5.1484 -1.8103 43 1 -0.1140 2.8679 -3.0291 44 1 0.1083 1.4386 -4.0664 45 1 1.1470 1.6733 -2.6401 46 1 -1.1612 3.4234 -7.7928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452064477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:43 Heat of formation + Delta-G solvation = -124.054613 kcal Electronic energy + Delta-G solvation = -27773.754409 eV Core-core repulsion = 24018.328745 eV Total energy + Delta-G solvation = -3755.425664 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -39.44241 -36.84923 -36.50802 -36.33602 -35.30746 -33.43151 -32.46324 -31.26269 -30.00919 -27.90486 -26.85647 -25.64401 -25.01947 -22.95028 -21.07264 -20.82793 -20.66297 -19.04129 -17.59358 -17.17530 -16.75540 -16.65037 -16.10774 -15.68872 -15.30401 -15.01145 -14.56498 -14.03882 -13.59255 -13.48639 -13.33092 -13.16702 -13.00585 -12.75868 -12.48595 -12.25343 -12.16366 -12.07687 -11.91117 -11.69364 -11.59623 -11.44527 -11.34096 -11.28920 -11.24776 -11.20121 -11.04175 -10.81807 -10.64299 -10.46124 -10.15075 -9.81361 -9.57310 -9.34318 -9.22855 -8.62446 -8.07953 -6.10515 -4.10336 1.11044 3.23176 3.30513 3.34841 3.36640 3.56931 4.00258 4.35231 4.36368 4.45647 4.72594 4.89310 4.95934 5.04280 5.08583 5.14058 5.20389 5.26825 5.27157 5.35738 5.41172 5.47298 5.61414 5.68377 5.72165 5.79454 5.84269 5.95844 6.07038 6.09722 6.10522 6.20543 6.24804 6.35150 6.44448 6.55715 6.64643 6.87181 7.04341 7.16101 7.35604 7.44638 7.67803 8.49977 8.94183 9.49733 11.02589 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013421 B = 0.005880 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.836043 B = 4760.982586 C = 6126.172831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.058 3.942 3 O -0.372 6.372 4 C 0.081 3.919 5 H 0.069 0.931 6 C -0.145 4.145 7 C -0.120 4.120 8 C -0.139 4.139 9 C 0.156 3.844 10 H 0.102 0.898 11 N -1.126 6.126 12 S 2.780 3.220 13 O -0.988 6.988 14 O -0.977 6.977 15 N -0.981 5.981 16 C 0.111 3.889 17 C 0.242 3.758 18 H 0.052 0.948 19 C -0.162 4.162 20 C -0.519 4.519 21 H 0.083 0.917 22 C 0.074 3.926 23 N -0.895 5.895 24 Si 0.882 3.118 25 H -0.277 1.277 26 H -0.294 1.294 27 H -0.266 1.266 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.410 0.590 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.059 0.941 44 H 0.044 0.956 45 H 0.040 0.960 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.034 -7.442 19.275 21.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.018 4.018 3 O -0.291 6.291 4 C 0.021 3.979 5 H 0.087 0.913 6 C -0.183 4.183 7 C -0.158 4.158 8 C -0.178 4.178 9 C 0.048 3.952 10 H 0.120 0.880 11 N -0.883 5.883 12 S 2.788 3.212 13 O -0.971 6.971 14 O -0.961 6.961 15 N -0.823 5.823 16 C -0.036 4.036 17 C 0.137 3.863 18 H 0.070 0.930 19 C -0.221 4.221 20 C -0.558 4.558 21 H 0.101 0.899 22 C -0.129 4.129 23 N -0.533 5.533 24 Si 0.712 3.288 25 H -0.204 1.204 26 H -0.222 1.222 27 H -0.191 1.191 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.243 0.757 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.396 -6.650 18.655 21.141 hybrid contribution -0.323 -1.915 -0.020 1.942 sum 7.074 -8.565 18.636 21.695 Atomic orbital electron populations 1.21763 0.93637 1.02140 1.03544 1.22490 0.95793 0.83888 0.99667 1.87999 1.19977 1.26259 1.94848 1.23055 0.81891 0.97791 0.95113 0.91297 1.22673 1.00579 0.98276 0.96792 1.22270 1.00153 0.96737 0.96671 1.22974 0.97798 1.02732 0.94336 1.21579 0.96678 0.96452 0.80527 0.87995 1.56334 1.78973 1.32682 1.20305 1.01963 0.73325 0.73199 0.72680 1.93553 1.77784 1.44834 1.80936 1.93612 1.80892 1.78564 1.43000 1.57376 1.26499 1.39877 1.58585 1.21202 0.98836 0.89243 0.94281 1.19037 0.90480 0.88800 0.87951 0.93011 1.22497 1.00639 0.99710 0.99251 1.21149 1.26272 0.95746 1.12668 0.89941 1.24885 0.95109 0.97872 0.94985 1.69874 1.29504 1.35601 1.18314 0.86955 0.78874 0.86645 0.76336 1.20433 1.22186 1.19094 0.91366 0.91970 0.91187 0.93387 0.93791 0.91354 0.90500 0.91287 0.90998 0.90651 0.89680 0.75729 0.92872 0.90815 0.93042 0.92218 0.93798 0.94120 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 37.16 0.38 -1.17 16 2 C 0.06 0.60 6.50 37.16 0.24 0.85 16 3 O -0.37 -4.57 9.91 -35.23 -0.35 -4.92 16 4 C 0.08 0.86 3.13 -25.50 -0.08 0.78 16 5 H 0.07 0.67 7.43 -51.93 -0.39 0.28 16 6 C -0.14 -1.23 6.62 -25.50 -0.17 -1.40 16 7 C -0.12 -1.01 6.83 -25.07 -0.17 -1.18 16 8 C -0.14 -1.46 6.58 -24.73 -0.16 -1.62 16 9 C 0.16 1.91 3.12 -66.27 -0.21 1.70 16 10 H 0.10 1.35 6.91 -51.93 -0.36 0.99 16 11 N -1.13 -15.71 5.66 -3.48 -0.02 -15.73 16 12 S 2.78 52.45 6.04 -107.50 -0.65 51.80 16 13 O -0.99 -19.58 16.77 -57.17 -0.96 -20.53 16 14 O -0.98 -21.97 16.84 -57.17 -0.96 -22.94 16 15 N -0.98 -19.84 3.12 -115.86 -0.36 -20.20 16 16 C 0.11 1.98 9.23 59.84 0.55 2.53 16 17 C 0.24 5.64 2.22 -69.08 -0.15 5.48 16 18 H 0.05 1.28 6.06 -51.93 -0.31 0.97 16 19 C -0.16 -3.33 8.54 37.16 0.32 -3.01 16 20 C -0.52 -14.36 8.89 -34.44 -0.31 -14.67 16 21 H 0.08 2.47 7.62 -52.49 -0.40 2.07 16 22 C 0.07 2.11 5.45 -17.82 -0.10 2.02 16 23 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 24 Si 0.88 21.54 24.31 -169.99 -4.13 17.41 16 25 H -0.28 -6.46 6.93 56.52 0.39 -6.07 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.27 -6.24 6.53 56.52 0.37 -5.87 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.66 7.96 -51.93 -0.41 0.25 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.41 4.85 8.57 -34.47 -0.30 4.55 16 40 H 0.05 0.99 8.02 -51.92 -0.42 0.58 16 41 H 0.07 1.28 6.81 -51.93 -0.35 0.92 16 42 H 0.05 0.77 6.69 -51.93 -0.35 0.42 16 43 H 0.06 1.20 7.08 -51.93 -0.37 0.83 16 44 H 0.04 0.94 3.46 -51.93 -0.18 0.76 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 369.00 15.07 5.56 5.56 Total: -1.00 -33.67 369.00 -8.61 -42.28 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.66 Total: 3.24 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 0.15 Total: -9.69 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: 0.39 Total: -62.21 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -2.27 Total: -48.39 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.13 Total: 17.41 kcal Atomic # 16 Polarization: 52.45 SS G_CDS: -0.65 Total: 51.80 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.67 -8.61 -42.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452064477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.772 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds