Wall clock time and date at job start Tue Mar 31 2020 13:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.47102 * 2 1 4 4 C 1.42900 * 114.00087 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.46929 * 30.00389 * 4 3 2 6 6 C 1.53000 * 109.46870 * 270.00089 * 4 3 2 7 7 C 1.53006 * 109.46823 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46899 * 60.00310 * 7 6 4 9 9 C 1.52992 * 109.47171 * 299.99959 * 8 7 6 10 10 C 1.52996 * 109.47291 * 60.00159 * 9 8 7 11 11 H 1.08998 * 109.47261 * 59.99865 * 10 9 8 12 12 N 1.46506 * 109.47490 * 180.02562 * 10 9 8 13 13 S 1.65594 * 120.00076 * 263.91861 * 12 10 9 14 14 O 1.42092 * 106.40292 * 176.55159 * 13 12 10 15 15 O 1.42102 * 106.40259 * 309.47192 * 13 12 10 16 16 N 1.65599 * 107.21969 * 63.01040 * 13 12 10 17 17 C 1.46500 * 120.00430 * 264.09874 * 16 13 12 18 18 C 1.46505 * 119.99934 * 84.09919 * 16 13 12 19 19 C 1.50697 * 109.47051 * 94.55908 * 18 16 13 20 20 H 1.07992 * 120.00160 * 4.72632 * 19 18 16 21 21 C 1.37879 * 119.99708 * 184.72414 * 19 18 16 22 22 N 1.31518 * 119.99871 * 5.33362 * 21 19 18 23 23 Si 1.86796 * 119.99975 * 185.32565 * 21 19 18 24 24 H 1.48499 * 109.46884 * 65.00368 * 23 21 19 25 25 H 1.48499 * 109.47351 * 185.00093 * 23 21 19 26 26 H 1.48496 * 109.47465 * 305.00294 * 23 21 19 27 27 H 1.09005 * 109.47128 * 60.00032 * 1 2 3 28 28 H 1.09004 * 109.46953 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47462 * 299.99657 * 1 2 3 30 30 H 1.08997 * 109.47462 * 240.00343 * 2 1 3 31 31 H 1.08993 * 109.47657 * 120.00327 * 2 1 3 32 32 H 1.08993 * 109.47590 * 299.99896 * 6 4 3 33 33 H 1.09006 * 109.47154 * 60.00449 * 6 4 3 34 34 H 1.09001 * 109.46792 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47361 * 300.00392 * 7 6 4 36 36 H 1.08998 * 109.47047 * 59.99890 * 8 7 6 37 37 H 1.09005 * 109.47165 * 180.02562 * 8 7 6 38 38 H 1.09005 * 109.47416 * 300.00088 * 9 8 7 39 39 H 1.09006 * 109.47196 * 180.02562 * 9 8 7 40 40 H 0.97003 * 119.99734 * 83.63903 * 12 10 9 41 41 H 1.08997 * 109.47342 * 89.99804 * 17 16 13 42 42 H 1.08995 * 109.47717 * 210.00216 * 17 16 13 43 43 H 1.09003 * 109.46630 * 330.00155 * 17 16 13 44 44 H 1.09002 * 109.46733 * 214.55954 * 18 16 13 45 45 H 1.08995 * 109.46954 * 334.55561 * 18 16 13 46 46 H 0.97003 * 119.99595 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8635 0.6017 -0.5130 6 6 3.9386 1.5007 1.4433 7 6 5.4638 1.6221 1.4439 8 6 5.8733 2.9080 0.7229 9 6 5.3655 2.8676 -0.7197 10 6 3.8403 2.7461 -0.7203 11 1 3.4072 3.6043 -0.2066 12 7 3.3540 2.7068 -2.1018 13 16 2.8232 4.0947 -2.8325 14 8 2.5009 3.7452 -4.1715 15 8 1.8916 4.6879 -1.9384 16 7 4.1138 5.1288 -2.9169 17 6 4.3019 6.1515 -1.8849 18 6 5.0677 5.0210 -4.0237 19 6 4.6763 5.9789 -5.1192 20 1 3.8504 6.6591 -4.9723 21 6 5.3726 5.9869 -6.3092 22 7 6.3090 5.0899 -6.5292 23 14 4.9861 7.2717 -7.6089 24 1 5.3317 8.6197 -7.0906 25 1 5.7805 6.9930 -8.8322 26 1 3.5386 7.2238 -7.9372 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.5060 2.3592 1.9569 33 1 3.6465 0.5847 1.9571 34 1 5.8256 1.6505 2.4718 35 1 5.8969 0.7639 0.9302 36 1 5.4402 3.7662 1.2366 37 1 6.9599 2.9943 0.7229 38 1 5.7985 2.0093 -1.2335 39 1 5.6575 3.7835 -1.2335 40 1 3.3469 1.8684 -2.5897 41 1 4.9127 5.7459 -1.0785 42 1 4.8014 7.0178 -2.3185 43 1 3.3313 6.4517 -1.4899 44 1 6.0678 5.2665 -3.6665 45 1 5.0603 4.0025 -4.4117 46 1 6.7986 5.0954 -7.3666 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452065546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:37 Heat of formation + Delta-G solvation = -141.131888 kcal Electronic energy + Delta-G solvation = -27214.524394 eV Core-core repulsion = 23458.358203 eV Total energy + Delta-G solvation = -3756.166191 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.60001 -36.86442 -36.42640 -35.43600 -35.03300 -34.05577 -32.40345 -31.58733 -29.79519 -28.18544 -27.71453 -25.00963 -23.25255 -22.33544 -22.32418 -22.17129 -20.21040 -18.72783 -17.35730 -17.02371 -16.57118 -16.33780 -16.08169 -15.67437 -15.16601 -14.73984 -14.30851 -14.10386 -13.93610 -13.60323 -13.39166 -13.32182 -13.15036 -12.96196 -12.39840 -12.25463 -12.13181 -11.94696 -11.70128 -11.52170 -11.45112 -11.40180 -11.24351 -11.10975 -11.07544 -11.01004 -10.87210 -10.76805 -10.66501 -10.45913 -10.36221 -10.00808 -9.74982 -9.57805 -9.12779 -8.40745 -8.01938 -6.03918 -4.06645 1.35095 3.35564 3.39125 3.43943 3.49399 3.59675 4.24232 4.47820 4.51011 4.68014 4.80045 4.90351 4.94494 5.06380 5.07903 5.14769 5.16980 5.23461 5.27401 5.30835 5.34761 5.51016 5.55668 5.69718 5.71841 5.76418 5.79519 5.87237 5.93947 5.98205 6.01759 6.03480 6.11138 6.27167 6.32150 6.44997 6.59100 7.15957 7.19703 7.31090 7.46112 7.66892 7.94950 8.24157 8.95202 9.57957 11.04687 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.004120 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.199002 B = 6794.433932 C = 7561.998629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.371 6.371 4 C 0.089 3.911 5 H 0.065 0.935 6 C -0.140 4.140 7 C -0.118 4.118 8 C -0.120 4.120 9 C -0.141 4.141 10 C 0.162 3.838 11 H 0.094 0.906 12 N -1.123 6.123 13 S 2.783 3.217 14 O -0.965 6.965 15 O -0.996 6.996 16 N -0.997 5.997 17 C 0.094 3.906 18 C 0.260 3.740 19 C -0.528 4.528 20 H 0.060 0.940 21 C 0.063 3.937 22 N -0.896 5.896 23 Si 0.896 3.104 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.410 0.590 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.030 0.970 45 H 0.039 0.961 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.938 -10.106 17.624 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.290 6.290 4 C 0.029 3.971 5 H 0.083 0.917 6 C -0.178 4.178 7 C -0.156 4.156 8 C -0.158 4.158 9 C -0.181 4.181 10 C 0.054 3.946 11 H 0.112 0.888 12 N -0.879 5.879 13 S 2.790 3.210 14 O -0.949 6.949 15 O -0.980 6.980 16 N -0.840 5.840 17 C -0.053 4.053 18 C 0.138 3.862 19 C -0.568 4.568 20 H 0.078 0.922 21 C -0.140 4.140 22 N -0.535 5.535 23 Si 0.724 3.276 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.200 1.200 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.242 0.758 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.048 0.952 45 H 0.057 0.943 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.828 -9.646 17.259 19.973 hybrid contribution 0.489 -0.077 -0.904 1.031 sum -2.339 -9.723 16.355 19.170 Atomic orbital electron populations 1.21746 0.93852 1.01966 1.03418 1.22495 0.95657 0.84240 0.99698 1.88026 1.20321 1.25780 1.94922 1.22351 0.81583 0.97865 0.95269 0.91740 1.22044 0.96147 1.02900 0.96720 1.21530 0.94868 0.98430 1.00730 1.21547 1.01091 0.97852 0.95298 1.22168 0.94353 1.04297 0.97235 1.20757 0.93716 0.98465 0.81702 0.88800 1.56154 1.82865 1.26979 1.21904 1.01916 0.73420 0.72800 0.72816 1.93641 1.82785 1.83412 1.35074 1.93525 1.60172 1.76958 1.67310 1.57646 1.46698 1.45001 1.34635 1.21376 1.01418 0.92557 0.89966 1.19009 0.87270 0.97963 0.81995 1.21469 1.16195 1.19820 0.99298 0.92193 1.24922 0.95176 0.95903 0.97951 1.69918 1.24040 1.33981 1.25563 0.86583 0.78621 0.81724 0.80697 1.20266 1.21219 1.19979 0.91604 0.91345 0.91873 0.93475 0.93727 0.90710 0.91676 0.91582 0.91853 0.91496 0.91272 0.91037 0.89625 0.75785 0.94317 0.90507 0.91566 0.95166 0.94315 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.16 0.38 -1.05 16 2 C 0.06 0.57 6.47 37.16 0.24 0.81 16 3 O -0.37 -4.89 9.85 -35.23 -0.35 -5.24 16 4 C 0.09 1.01 2.19 -26.73 -0.06 0.95 16 5 H 0.06 0.66 7.79 -51.93 -0.40 0.26 16 6 C -0.14 -1.29 5.54 -26.73 -0.15 -1.44 16 7 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 8 C -0.12 -1.11 5.92 -26.74 -0.16 -1.26 16 9 C -0.14 -1.66 5.53 -26.74 -0.15 -1.81 16 10 C 0.16 2.15 2.51 -67.93 -0.17 1.98 16 11 H 0.09 1.34 7.56 -51.93 -0.39 0.95 16 12 N -1.12 -17.74 5.38 -4.89 -0.03 -17.77 16 13 S 2.78 57.25 6.02 -107.50 -0.65 56.60 16 14 O -0.97 -24.04 17.34 -57.17 -0.99 -25.03 16 15 O -1.00 -21.70 16.08 -57.17 -0.92 -22.62 16 16 N -1.00 -20.59 2.82 -123.05 -0.35 -20.94 16 17 C 0.09 1.60 10.52 59.85 0.63 2.23 16 18 C 0.26 6.42 5.08 -5.19 -0.03 6.39 16 19 C -0.53 -14.89 9.38 -34.44 -0.32 -15.22 16 20 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 21 C 0.06 1.78 5.45 -17.82 -0.10 1.69 16 22 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 23 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.04 0.38 7.87 -51.93 -0.41 -0.03 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.53 7.87 -51.93 -0.41 0.12 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.14 6.52 -51.93 -0.34 0.80 16 40 H 0.41 5.84 8.85 -34.47 -0.31 5.54 16 41 H 0.04 0.54 7.08 -51.93 -0.37 0.17 16 42 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 43 H 0.07 1.10 7.00 -51.93 -0.36 0.74 16 44 H 0.03 0.74 8.11 -51.93 -0.42 0.32 16 45 H 0.04 1.02 7.78 -51.93 -0.40 0.62 16 46 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 378.42 15.07 5.70 5.70 Total: -1.00 -34.45 378.42 -9.90 -44.35 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -8.00 Total: 1.27 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -0.04 Total: -7.84 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: 0.36 Total: -64.14 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -2.26 Total: -52.89 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 57.25 SS G_CDS: -0.65 Total: 56.60 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.45 -9.90 -44.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452065546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.785 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds