Wall clock time and date at job start Tue Mar 31 2020 13:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46506 * 109.46881 * 2 1 4 4 C 1.34772 * 119.99784 * 83.01671 * 3 2 1 5 5 O 1.21371 * 119.99939 * 185.29397 * 4 3 2 6 6 C 1.49313 * 120.00014 * 5.29230 * 4 3 2 7 7 O 1.21380 * 119.99935 * 354.24255 * 6 4 3 8 8 N 1.34780 * 119.99730 * 174.23565 * 6 4 3 9 9 C 1.39194 * 119.99698 * 180.02562 * 8 6 4 10 10 C 1.36210 * 126.27235 * 359.41794 * 9 8 6 11 11 C 1.39697 * 107.85967 * 179.84717 * 10 9 8 12 12 C 1.50700 * 125.77314 * 180.13366 * 11 10 9 13 13 N 1.30851 * 108.45740 * 0.42133 * 11 10 9 14 14 N 1.35857 * 126.27236 * 179.72890 * 9 8 6 15 15 C 1.46495 * 126.09559 * 359.97438 * 14 9 8 16 16 C 1.50698 * 109.47299 * 90.00052 * 15 14 9 17 17 H 1.08000 * 119.99929 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00062 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00548 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99908 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47153 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47093 * 120.00409 * 20 18 16 23 23 H 1.48505 * 109.47249 * 240.00407 * 20 18 16 24 24 C 1.46496 * 119.99931 * 263.02253 * 3 2 1 25 25 C 1.53004 * 117.49660 * 196.55010 * 24 3 2 26 26 C 1.53004 * 117.50199 * 127.89073 * 24 3 2 27 27 H 1.09003 * 109.46999 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46882 * 299.99317 * 1 2 3 29 29 H 1.08994 * 109.47594 * 59.99685 * 1 2 3 30 30 H 1.08998 * 109.46882 * 240.00683 * 2 1 3 31 31 H 1.08989 * 109.47161 * 120.00129 * 2 1 3 32 32 H 0.97005 * 120.00009 * 359.73038 * 8 6 4 33 33 H 1.08001 * 126.07424 * 359.97438 * 10 9 8 34 34 H 1.08996 * 109.46962 * 270.31299 * 12 11 10 35 35 H 1.09000 * 109.47431 * 30.31117 * 12 11 10 36 36 H 1.09000 * 109.47457 * 150.31384 * 12 11 10 37 37 H 1.09006 * 109.47187 * 210.00010 * 15 14 9 38 38 H 1.09008 * 109.47521 * 329.99950 * 15 14 9 39 39 H 0.96999 * 120.00313 * 180.02562 * 19 18 16 40 40 H 1.08994 * 115.55115 * 342.21432 * 24 3 2 41 41 H 1.08999 * 117.49664 * 359.97438 * 25 24 3 42 42 H 1.09001 * 117.49978 * 145.01902 * 25 24 3 43 43 H 1.09000 * 117.49742 * 214.98073 * 26 24 3 44 44 H 1.09002 * 117.49229 * 359.97320 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1091 2.0639 1.1585 5 8 2.4214 3.2367 1.1490 6 6 1.8256 1.3773 2.4538 7 8 1.4127 0.2359 2.4579 8 7 2.0283 2.0249 3.6183 9 6 1.7645 1.3847 4.8257 10 6 1.2904 0.1170 4.9789 11 6 1.1716 -0.1335 6.3481 12 6 0.6858 -1.4174 6.9699 13 7 1.5477 0.9374 6.9993 14 7 1.9270 1.9118 6.0673 15 6 2.4130 3.2588 6.3762 16 6 1.2460 4.2094 6.4493 17 1 0.2426 3.8464 6.2827 18 6 1.4592 5.5424 6.7298 19 7 2.6810 5.9845 6.9331 20 14 0.0124 6.7206 6.8211 21 1 -1.2469 5.9796 6.5565 22 1 -0.0464 7.3283 8.1748 23 1 0.1805 7.7906 5.8051 24 6 2.4078 2.0205 -1.2593 25 6 3.2584 3.2894 -1.1739 26 6 1.7861 3.3806 -1.5831 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.3621 2.9357 3.6150 33 1 1.0510 -0.5730 4.1832 34 1 -0.3959 -1.3734 7.0962 35 1 0.9421 -2.2551 6.3213 36 1 1.1599 -1.5524 7.9421 37 1 2.9325 3.2468 7.3345 38 1 3.0994 3.5856 5.5949 39 1 2.8309 6.9222 7.1309 40 1 2.5972 1.3428 -2.0916 41 1 3.5278 3.6488 -0.1808 42 1 4.0071 3.4467 -1.9504 43 1 1.5669 3.5976 -2.6285 44 1 1.0871 3.7994 -0.8593 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532997321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:20 Heat of formation + Delta-G solvation = 62.935094 kcal Electronic energy + Delta-G solvation = -27521.184944 eV Core-core repulsion = 23670.716561 eV Total energy + Delta-G solvation = -3850.468383 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.41808 -40.48131 -38.83324 -36.92707 -35.33930 -34.46759 -33.74918 -32.08346 -30.23822 -29.27442 -28.51588 -26.08493 -25.65520 -23.34763 -23.05917 -22.56014 -22.39559 -20.51478 -19.80604 -18.97109 -17.53793 -16.94664 -16.65206 -16.51417 -16.03363 -15.93398 -15.27484 -14.81805 -14.66632 -14.34335 -14.16791 -13.78236 -13.67450 -13.50414 -12.95185 -12.87233 -12.80043 -12.56265 -12.11729 -12.08765 -11.87809 -11.73859 -11.58637 -11.39505 -11.24652 -11.03346 -10.89298 -10.77872 -10.54538 -10.38775 -10.32447 -9.81128 -9.78145 -9.23826 -8.70077 -8.65333 -7.98091 -7.57167 -6.31326 -4.39828 1.19563 2.02346 2.57813 3.06674 3.17532 3.18585 3.26592 3.32341 3.52709 3.65957 3.77934 4.20544 4.27636 4.61908 4.71109 4.86679 4.92246 5.02334 5.18988 5.22914 5.28740 5.40711 5.53130 5.59577 5.65861 5.79781 5.87350 5.98833 6.03592 6.06972 6.12102 6.16936 6.18139 6.33221 6.48756 6.52560 6.81168 6.89250 7.00567 7.32766 7.45170 7.52976 7.63860 7.80068 7.82612 8.07851 8.55682 8.68981 9.27996 10.76156 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009993 B = 0.004621 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.175348 B = 6057.347092 C = 8133.994837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.091 3.909 3 N -0.555 5.555 4 C 0.513 3.487 5 O -0.504 6.504 6 C 0.511 3.489 7 O -0.490 6.490 8 N -0.606 5.606 9 C 0.293 3.707 10 C -0.287 4.287 11 C 0.049 3.951 12 C -0.062 4.062 13 N -0.278 5.278 14 N -0.341 5.341 15 C 0.255 3.745 16 C -0.541 4.541 17 H 0.065 0.935 18 C 0.068 3.932 19 N -0.888 5.888 20 Si 0.906 3.094 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.280 1.280 24 C 0.065 3.935 25 C -0.191 4.191 26 C -0.184 4.184 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.428 0.572 33 H 0.163 0.837 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.269 0.731 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.560 -11.644 -16.269 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.031 4.031 3 N -0.287 5.287 4 C 0.296 3.704 5 O -0.380 6.380 6 C 0.292 3.708 7 O -0.364 6.364 8 N -0.254 5.254 9 C 0.071 3.929 10 C -0.318 4.318 11 C -0.115 4.115 12 C -0.121 4.121 13 N -0.103 5.103 14 N -0.126 5.126 15 C 0.137 3.863 16 C -0.580 4.580 17 H 0.084 0.916 18 C -0.136 4.136 19 N -0.526 5.526 20 Si 0.733 3.267 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.206 1.206 24 C -0.039 4.039 25 C -0.228 4.228 26 C -0.223 4.223 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.137 0.863 32 H 0.267 0.733 33 H 0.181 0.819 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.345 -10.983 -15.091 18.668 hybrid contribution -0.696 1.112 -0.820 1.547 sum -1.041 -9.871 -15.911 18.753 Atomic orbital electron populations 1.22083 0.95197 1.02504 1.02076 1.22260 0.95381 0.80392 1.05040 1.47201 1.62046 1.14865 1.04616 1.19877 0.79222 0.86579 0.84715 1.90679 1.45554 1.15131 1.86615 1.19930 0.79802 0.86448 0.84578 1.90587 1.42898 1.16837 1.86107 1.42323 1.62088 1.18564 1.02402 1.17977 1.02414 0.92224 0.80259 1.21270 1.17437 0.96263 0.96873 1.22020 1.01298 0.95676 0.92545 1.20027 1.00694 0.91219 1.00166 1.77368 1.21299 0.97450 1.14218 1.49587 1.49265 1.13551 1.00234 1.19695 0.95637 0.71983 0.98963 1.21348 0.93288 0.92671 1.50682 0.91640 1.24927 0.96445 0.97995 0.94231 1.69919 1.19862 1.16131 1.46685 0.86298 0.82046 0.80390 0.77968 1.19571 1.20525 1.20552 1.21851 1.05587 0.89530 0.86886 1.23854 0.93901 0.99181 1.05873 1.23283 0.97370 0.99517 1.02122 0.91260 0.92025 0.93044 0.90704 0.86316 0.73345 0.81948 0.91260 0.91093 0.91489 0.92358 0.93649 0.92175 0.84851 0.84549 0.88875 0.88425 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.76 37.16 0.36 -1.19 16 2 C 0.09 0.87 5.76 -4.04 -0.02 0.85 16 3 N -0.56 -6.40 2.86 -166.66 -0.48 -6.88 16 4 C 0.51 7.46 7.47 -11.65 -0.09 7.38 16 5 O -0.50 -8.25 12.23 5.48 0.07 -8.18 16 6 C 0.51 8.16 7.64 -11.65 -0.09 8.08 16 7 O -0.49 -7.64 9.06 5.47 0.05 -7.59 16 8 N -0.61 -11.13 5.40 -11.80 -0.06 -11.19 16 9 C 0.29 6.12 7.68 -152.86 -1.17 4.94 16 10 C -0.29 -5.55 9.58 -39.77 -0.38 -5.93 16 11 C 0.05 0.95 7.20 -82.47 -0.59 0.36 16 12 C -0.06 -0.88 10.44 36.01 0.38 -0.50 16 13 N -0.28 -6.36 12.56 33.64 0.42 -5.93 16 14 N -0.34 -7.97 3.62 -61.47 -0.22 -8.19 16 15 C 0.25 6.47 6.02 -5.20 -0.03 6.44 16 16 C -0.54 -14.84 9.39 -34.44 -0.32 -15.16 16 17 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 18 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 19 N -0.89 -24.85 13.29 55.43 0.74 -24.11 16 20 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.07 0.64 6.61 -67.93 -0.45 0.19 16 25 C -0.19 -2.05 9.63 -26.69 -0.26 -2.31 16 26 C -0.18 -1.90 9.88 -26.69 -0.26 -2.16 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.75 7.14 -51.93 -0.37 0.38 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.52 7.94 -51.93 -0.41 0.11 16 31 H 0.12 1.31 5.31 -51.96 -0.28 1.03 16 32 H 0.43 7.98 7.47 -40.82 -0.31 7.67 16 33 H 0.16 2.90 5.83 -52.49 -0.31 2.59 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.58 8.14 -51.93 -0.42 1.15 16 38 H 0.05 1.14 7.52 -51.92 -0.39 0.74 16 39 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.13 0.91 8.03 -51.93 -0.42 0.49 16 41 H 0.14 1.88 5.20 -52.16 -0.27 1.61 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.10 1.25 7.60 -51.93 -0.39 0.86 16 LS Contribution 365.70 15.07 5.51 5.51 Total: -1.00 -30.51 365.70 -8.10 -38.61 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -6.07 Total: 9.02 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -3.03 Total: 2.72 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.40 Total: -56.30 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.12 Total: -15.77 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.51 -8.10 -38.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532997321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.547 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds