Wall clock time and date at job start Tue Mar 31 2020 13:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46506 * 109.46881 * 2 1 4 4 C 1.34772 * 119.99784 * 83.01671 * 3 2 1 5 5 O 1.21371 * 119.99939 * 185.29397 * 4 3 2 6 6 C 1.49313 * 120.00014 * 5.29230 * 4 3 2 7 7 O 1.21380 * 119.99935 * 354.24255 * 6 4 3 8 8 N 1.34780 * 119.99730 * 174.23565 * 6 4 3 9 9 C 1.39194 * 119.99698 * 180.02562 * 8 6 4 10 10 C 1.36210 * 126.27235 * 359.41794 * 9 8 6 11 11 C 1.39697 * 107.85967 * 179.84717 * 10 9 8 12 12 C 1.50700 * 125.77314 * 180.13366 * 11 10 9 13 13 N 1.30851 * 108.45740 * 0.42133 * 11 10 9 14 14 N 1.35857 * 126.27236 * 179.72890 * 9 8 6 15 15 C 1.46495 * 126.09559 * 359.97438 * 14 9 8 16 16 C 1.50698 * 109.47299 * 90.00052 * 15 14 9 17 17 H 1.08000 * 119.99929 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00062 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00548 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99908 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47153 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47093 * 120.00409 * 20 18 16 23 23 H 1.48505 * 109.47249 * 240.00407 * 20 18 16 24 24 C 1.46496 * 119.99931 * 263.02253 * 3 2 1 25 25 C 1.53004 * 117.49660 * 196.55010 * 24 3 2 26 26 C 1.53004 * 117.50199 * 127.89073 * 24 3 2 27 27 H 1.09003 * 109.46999 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46882 * 299.99317 * 1 2 3 29 29 H 1.08994 * 109.47594 * 59.99685 * 1 2 3 30 30 H 1.08998 * 109.46882 * 240.00683 * 2 1 3 31 31 H 1.08989 * 109.47161 * 120.00129 * 2 1 3 32 32 H 0.97005 * 120.00009 * 359.73038 * 8 6 4 33 33 H 1.08001 * 126.07424 * 359.97438 * 10 9 8 34 34 H 1.08996 * 109.46962 * 270.31299 * 12 11 10 35 35 H 1.09000 * 109.47431 * 30.31117 * 12 11 10 36 36 H 1.09000 * 109.47457 * 150.31384 * 12 11 10 37 37 H 1.09006 * 109.47187 * 210.00010 * 15 14 9 38 38 H 1.09008 * 109.47521 * 329.99950 * 15 14 9 39 39 H 0.96999 * 120.00313 * 180.02562 * 19 18 16 40 40 H 1.08994 * 115.55115 * 342.21432 * 24 3 2 41 41 H 1.08999 * 117.49664 * 359.97438 * 25 24 3 42 42 H 1.09001 * 117.49978 * 145.01902 * 25 24 3 43 43 H 1.09000 * 117.49742 * 214.98073 * 26 24 3 44 44 H 1.09002 * 117.49229 * 359.97320 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1091 2.0639 1.1585 5 8 2.4214 3.2367 1.1490 6 6 1.8256 1.3773 2.4538 7 8 1.4127 0.2359 2.4579 8 7 2.0283 2.0249 3.6183 9 6 1.7645 1.3847 4.8257 10 6 1.2904 0.1170 4.9789 11 6 1.1716 -0.1335 6.3481 12 6 0.6858 -1.4174 6.9699 13 7 1.5477 0.9374 6.9993 14 7 1.9270 1.9118 6.0673 15 6 2.4130 3.2588 6.3762 16 6 1.2460 4.2094 6.4493 17 1 0.2426 3.8464 6.2827 18 6 1.4592 5.5424 6.7298 19 7 2.6810 5.9845 6.9331 20 14 0.0124 6.7206 6.8211 21 1 -1.2469 5.9796 6.5565 22 1 -0.0464 7.3283 8.1748 23 1 0.1805 7.7906 5.8051 24 6 2.4078 2.0205 -1.2593 25 6 3.2584 3.2894 -1.1739 26 6 1.7861 3.3806 -1.5831 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.3621 2.9357 3.6150 33 1 1.0510 -0.5730 4.1832 34 1 -0.3959 -1.3734 7.0962 35 1 0.9421 -2.2551 6.3213 36 1 1.1599 -1.5524 7.9421 37 1 2.9325 3.2468 7.3345 38 1 3.0994 3.5856 5.5949 39 1 2.8309 6.9222 7.1309 40 1 2.5972 1.3428 -2.0916 41 1 3.5278 3.6488 -0.1808 42 1 4.0071 3.4467 -1.9504 43 1 1.5669 3.5976 -2.6285 44 1 1.0871 3.7994 -0.8593 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532997321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:19 Heat of formation + Delta-G solvation = 44.376090 kcal Electronic energy + Delta-G solvation = -27521.989723 eV Core-core repulsion = 23670.716561 eV Total energy + Delta-G solvation = -3851.273161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.74968 -41.85624 -40.09524 -37.98037 -36.52072 -35.89682 -35.36746 -33.85968 -31.14385 -30.85090 -30.07404 -27.84104 -26.88274 -24.85096 -24.17559 -23.72261 -23.29795 -21.83142 -21.32389 -20.27461 -18.94731 -18.68674 -18.26095 -17.68547 -17.24798 -17.03583 -16.68833 -16.35406 -16.08793 -15.83847 -15.38818 -14.93303 -14.72765 -14.57342 -14.45627 -14.38350 -14.05042 -13.76757 -13.61258 -13.43694 -13.14620 -12.99114 -12.87943 -12.74531 -12.66937 -12.36093 -12.33396 -12.07062 -12.00043 -11.76634 -11.66202 -11.37228 -11.23429 -10.80032 -10.38926 -9.70181 -9.60491 -9.16658 -8.40417 -6.57961 -0.06804 0.78521 1.07465 1.32319 1.33736 1.45879 1.73656 1.79786 2.07802 2.22845 2.32291 2.88585 2.90239 2.99188 3.78976 3.79595 3.97675 4.04736 4.13557 4.21498 4.39884 4.44193 4.47479 4.61350 4.65800 4.75881 4.80359 4.83036 4.90060 4.92669 4.93289 5.05958 5.08738 5.16899 5.20334 5.30454 5.37158 5.46712 5.60730 5.72105 5.81119 5.93601 5.97156 6.08889 6.42735 6.56724 6.71982 6.95704 7.14095 8.66639 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009993 B = 0.004621 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.175348 B = 6057.347092 C = 8133.994837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.087 3.913 3 N -0.545 5.545 4 C 0.510 3.490 5 O -0.530 6.530 6 C 0.512 3.488 7 O -0.483 6.483 8 N -0.616 5.616 9 C 0.288 3.712 10 C -0.288 4.288 11 C 0.060 3.940 12 C -0.060 4.060 13 N -0.324 5.324 14 N -0.368 5.368 15 C 0.272 3.728 16 C -0.557 4.557 17 H 0.048 0.952 18 C 0.026 3.974 19 N -0.914 5.914 20 Si 0.970 3.030 21 H -0.275 1.275 22 H -0.270 1.270 23 H -0.269 1.269 24 C 0.070 3.930 25 C -0.202 4.202 26 C -0.185 4.185 27 H 0.086 0.914 28 H 0.029 0.971 29 H 0.060 0.940 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.423 0.577 33 H 0.181 0.819 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.031 0.969 38 H 0.041 0.959 39 H 0.275 0.725 40 H 0.178 0.822 41 H 0.102 0.898 42 H 0.119 0.881 43 H 0.127 0.873 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.501 -13.360 -18.777 23.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.033 4.033 3 N -0.275 5.275 4 C 0.292 3.708 5 O -0.408 6.408 6 C 0.294 3.706 7 O -0.356 6.356 8 N -0.264 5.264 9 C 0.066 3.934 10 C -0.320 4.320 11 C -0.106 4.106 12 C -0.119 4.119 13 N -0.149 5.149 14 N -0.154 5.154 15 C 0.153 3.847 16 C -0.595 4.595 17 H 0.066 0.934 18 C -0.176 4.176 19 N -0.552 5.552 20 Si 0.793 3.207 21 H -0.199 1.199 22 H -0.195 1.195 23 H -0.194 1.194 24 C -0.033 4.033 25 C -0.240 4.240 26 C -0.223 4.223 27 H 0.105 0.895 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.134 0.866 31 H 0.123 0.877 32 H 0.260 0.740 33 H 0.198 0.802 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.195 0.805 41 H 0.120 0.880 42 H 0.137 0.863 43 H 0.145 0.855 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.291 -12.748 -17.641 21.803 hybrid contribution -0.405 1.515 -0.132 1.574 sum -1.695 -11.233 -17.773 21.093 Atomic orbital electron populations 1.22048 0.95104 1.03328 1.00953 1.22420 0.95345 0.79214 1.06363 1.47394 1.60441 1.15453 1.04239 1.19676 0.79746 0.86369 0.84986 1.90704 1.47089 1.16120 1.86848 1.20361 0.79159 0.86509 0.84577 1.90572 1.42227 1.16589 1.86200 1.42490 1.62926 1.18516 1.02459 1.18402 1.01890 0.92815 0.80258 1.21558 1.17125 0.95796 0.97476 1.22936 0.98696 0.96288 0.92647 1.20253 1.01560 0.89227 1.00849 1.77323 1.23654 0.98567 1.15349 1.49341 1.51360 1.13247 1.01425 1.19203 0.94829 0.73338 0.97291 1.21437 0.92977 0.93672 1.51396 0.93366 1.25717 0.99034 0.99339 0.93517 1.69995 1.21507 1.16831 1.46869 0.85333 0.78522 0.78279 0.78517 1.19950 1.19517 1.19360 1.22325 1.04354 0.89956 0.86619 1.23773 0.94892 1.00382 1.04911 1.23280 0.96287 0.99870 1.02865 0.89477 0.95196 0.92069 0.86627 0.87743 0.73978 0.80181 0.89607 0.88060 0.90753 0.95068 0.94139 0.91617 0.80482 0.87985 0.86335 0.85518 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.76 71.98 0.70 -1.96 16 2 C 0.09 1.42 5.76 86.38 0.50 1.92 16 3 N -0.54 -11.60 2.86 -799.55 -2.28 -13.89 16 4 C 0.51 14.97 7.47 87.23 0.65 15.62 16 5 O -0.53 -18.11 12.23 -3.31 -0.04 -18.15 16 6 C 0.51 16.62 7.64 87.23 0.67 17.29 16 7 O -0.48 -14.77 9.06 -3.34 -0.03 -14.80 16 8 N -0.62 -23.66 5.40 -309.58 -1.67 -25.33 16 9 C 0.29 12.39 7.68 131.25 1.01 13.40 16 10 C -0.29 -11.08 9.58 22.15 0.21 -10.87 16 11 C 0.06 2.28 7.20 43.06 0.31 2.59 16 12 C -0.06 -1.56 10.44 71.24 0.74 -0.82 16 13 N -0.32 -15.24 12.56 -47.48 -0.60 -15.83 16 14 N -0.37 -18.04 3.62 -348.39 -1.26 -19.30 16 15 C 0.27 14.67 6.02 85.63 0.52 15.19 16 16 C -0.56 -31.84 9.39 25.60 0.24 -31.60 16 17 H 0.05 2.87 7.81 -2.91 -0.02 2.84 16 18 C 0.03 1.42 5.46 84.65 0.46 1.89 16 19 N -0.91 -52.38 13.29 21.45 0.28 -52.09 16 20 Si 0.97 44.18 29.54 68.60 2.03 46.20 16 21 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 C 0.07 1.16 6.61 44.99 0.30 1.46 16 25 C -0.20 -4.09 9.63 30.62 0.29 -3.79 16 26 C -0.18 -3.49 9.88 30.62 0.30 -3.18 16 27 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.03 0.69 7.14 -2.39 -0.02 0.68 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.12 1.03 7.94 -2.39 -0.02 1.01 16 31 H 0.10 2.07 5.31 -2.79 -0.01 2.06 16 32 H 0.42 16.93 7.47 -92.70 -0.69 16.24 16 33 H 0.18 6.17 5.83 -2.91 -0.02 6.16 16 34 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.03 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.04 2.17 7.52 -2.38 -0.02 2.16 16 39 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 40 H 0.18 1.45 8.03 -2.39 -0.02 1.43 16 41 H 0.10 2.89 5.20 -6.10 -0.03 2.85 16 42 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.07 1.73 7.60 -2.39 -0.02 1.71 16 Total: -1.00 -69.73 365.70 3.65 -66.07 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.32 Total: 29.98 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: 6.90 Total: 17.15 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -5.53 Total: -126.45 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -0.07 Total: -32.95 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -69.73 3.65 -66.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532997321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.448 kcal (2) G-P(sol) polarization free energy of solvation -69.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds