Wall clock time and date at job start Tue Mar 31 2020 13:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47580 * 2 1 4 4 C 1.46505 * 119.99893 * 275.00700 * 3 2 1 5 5 C 1.50703 * 109.46668 * 293.14881 * 4 3 2 6 6 H 1.07998 * 120.00349 * 354.87348 * 5 4 3 7 7 C 1.37883 * 119.99672 * 174.87118 * 5 4 3 8 8 N 1.31516 * 120.00016 * 9.74504 * 7 5 4 9 9 Si 1.86793 * 120.00052 * 189.74473 * 7 5 4 10 10 H 1.48497 * 109.47003 * 55.53160 * 9 7 5 11 11 H 1.48496 * 109.47143 * 175.53132 * 9 7 5 12 12 H 1.48499 * 109.47178 * 295.53263 * 9 7 5 13 13 S 1.65598 * 119.99955 * 94.99931 * 3 2 1 14 14 O 1.42096 * 106.40261 * 329.41323 * 13 3 2 15 15 O 1.42101 * 106.40518 * 196.48820 * 13 3 2 16 16 N 1.65605 * 107.21466 * 82.95057 * 13 3 2 17 17 C 1.46499 * 120.00265 * 69.68023 * 16 13 3 18 18 C 1.53173 * 109.54376 * 213.03511 * 17 16 13 19 19 C 1.53093 * 109.21758 * 183.18168 * 18 17 16 20 20 H 1.08998 * 109.48437 * 177.55386 * 19 18 17 21 21 C 1.53004 * 109.48060 * 297.57997 * 19 18 17 22 22 O 1.42903 * 109.41511 * 57.57090 * 19 18 17 23 23 C 1.42910 * 114.10165 * 298.84600 * 22 19 18 24 24 H 1.08999 * 109.47945 * 301.18006 * 23 22 19 25 25 C 1.52993 * 109.48515 * 181.14854 * 23 22 19 26 26 C 1.53092 * 109.41016 * 61.15365 * 23 22 19 27 27 H 1.09001 * 109.46797 * 299.99987 * 1 2 3 28 28 H 1.08997 * 109.47482 * 59.99137 * 1 2 3 29 29 H 1.08994 * 109.47614 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46720 * 240.00419 * 2 1 3 31 31 H 1.08997 * 109.47482 * 120.00863 * 2 1 3 32 32 H 1.08990 * 109.47582 * 53.15133 * 4 3 2 33 33 H 1.09000 * 109.47044 * 173.15672 * 4 3 2 34 34 H 0.96998 * 120.00075 * 179.97438 * 8 7 5 35 35 H 0.97001 * 120.00143 * 249.67705 * 16 13 3 36 36 H 1.09007 * 109.61136 * 333.24839 * 17 16 13 37 37 H 1.08994 * 109.53026 * 63.24319 * 18 17 16 38 38 H 1.09007 * 109.52096 * 303.11470 * 18 17 16 39 39 H 1.09003 * 109.46860 * 55.98086 * 21 19 18 40 40 H 1.08994 * 109.47043 * 175.97566 * 21 19 18 41 41 H 1.08998 * 109.47053 * 295.98027 * 21 19 18 42 42 H 1.08998 * 109.46886 * 59.99977 * 25 23 22 43 43 H 1.08997 * 109.47456 * 179.97438 * 25 23 22 44 44 H 1.09001 * 109.47168 * 300.00485 * 25 23 22 45 45 H 1.09002 * 109.52688 * 62.30472 * 26 23 22 46 46 H 1.09004 * 109.52011 * 182.42294 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.2489 1.4762 -2.0895 6 1 3.8400 0.6714 -1.6779 7 6 3.4922 1.9250 -3.3703 8 7 2.9109 3.0220 -3.8042 9 14 4.6473 0.9748 -4.4893 10 1 4.1852 -0.4323 -4.5978 11 1 4.6553 1.5984 -5.8369 12 1 6.0197 1.0028 -3.9227 13 16 2.4123 2.1201 1.4287 14 8 1.5657 1.5544 2.4198 15 8 2.4681 3.5139 1.1576 16 7 3.9552 1.6560 1.8114 17 6 5.0848 2.1394 1.0135 18 6 6.1737 1.0633 0.9623 19 6 7.3821 1.6054 0.1944 20 1 8.1764 0.8589 0.1926 21 6 6.9727 1.9183 -1.2462 22 8 7.8506 2.7982 0.8267 23 6 6.8908 3.8566 0.8601 24 1 6.5926 4.1091 -0.1574 25 6 7.5090 5.0851 1.5305 26 6 5.6627 3.4048 1.6547 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.2174 2.0680 -1.8126 33 1 2.4145 3.1480 -1.0585 34 1 3.0823 3.3379 -4.7052 35 1 4.1111 1.0642 2.5639 36 1 4.7479 2.3656 0.0018 37 1 5.7878 0.1783 0.4563 38 1 6.4745 0.8009 1.9766 39 1 6.1312 2.6111 -1.2425 40 1 7.8132 2.3706 -1.7726 41 1 6.6822 0.9964 -1.7498 42 1 8.3839 5.4058 0.9651 43 1 6.7770 5.8923 1.5555 44 1 7.8068 4.8324 2.5482 45 1 5.9528 3.1908 2.6834 46 1 4.9118 4.1948 1.6450 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554518492.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:50 Heat of formation + Delta-G solvation = -140.697872 kcal Electronic energy + Delta-G solvation = -28152.152647 eV Core-core repulsion = 24396.005277 eV Total energy + Delta-G solvation = -3756.147370 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.76876 -36.70548 -36.07501 -35.36266 -35.23134 -33.17127 -32.73360 -31.10075 -29.93273 -28.34167 -26.70101 -26.45991 -23.24596 -22.74990 -21.94938 -21.62152 -19.41675 -18.69953 -17.20912 -16.86010 -16.56140 -16.27220 -15.97845 -15.44737 -14.86791 -14.63359 -14.37397 -14.02106 -13.90486 -13.50056 -13.27646 -12.90202 -12.68878 -12.42153 -12.07603 -12.04594 -11.99549 -11.81319 -11.75308 -11.60941 -11.55545 -11.37178 -11.31430 -11.21035 -11.10798 -11.02004 -10.79040 -10.76098 -10.57653 -10.34350 -10.03422 -9.87420 -9.77673 -9.29408 -9.11182 -8.50621 -8.08918 -6.17882 -4.22336 1.24607 3.18884 3.27098 3.28081 3.48226 3.93476 4.12026 4.30085 4.85899 4.90588 5.02216 5.08790 5.14265 5.20187 5.31207 5.40285 5.45927 5.60194 5.61749 5.68703 5.75079 5.77116 5.80913 5.87470 5.90833 6.07229 6.12485 6.14876 6.22433 6.24779 6.31757 6.35375 6.43219 6.54889 6.69276 6.71598 6.74907 7.24901 7.32683 7.44946 7.47265 7.60817 7.79919 8.11969 8.81431 9.42410 10.90102 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009585 B = 0.007942 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.557834 B = 3524.671396 C = 5398.819070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.133 3.867 3 N -0.991 5.991 4 C 0.243 3.757 5 C -0.538 4.538 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.883 3.117 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.270 1.270 13 S 2.780 3.220 14 O -1.000 7.000 15 O -0.979 6.979 16 N -1.125 6.125 17 C 0.150 3.850 18 C -0.149 4.149 19 C 0.093 3.907 20 H 0.099 0.901 21 C -0.191 4.191 22 O -0.379 6.379 23 C 0.083 3.917 24 H 0.069 0.931 25 C -0.142 4.142 26 C -0.166 4.166 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.032 0.968 33 H 0.054 0.946 34 H 0.265 0.735 35 H 0.406 0.594 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.233 -3.355 8.329 10.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.006 3.994 3 N -0.833 5.833 4 C 0.121 3.879 5 C -0.578 4.578 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.521 5.521 9 Si 0.710 3.290 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.195 1.195 13 S 2.788 3.212 14 O -0.984 6.984 15 O -0.962 6.962 16 N -0.881 5.881 17 C 0.043 3.957 18 C -0.189 4.189 19 C 0.035 3.965 20 H 0.117 0.883 21 C -0.248 4.248 22 O -0.299 6.299 23 C 0.025 3.975 24 H 0.087 0.913 25 C -0.199 4.199 26 C -0.205 4.205 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.237 0.763 36 H 0.131 0.869 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.780 -2.474 8.585 10.641 hybrid contribution 0.598 -1.175 -0.828 1.557 sum 6.378 -3.648 7.757 10.685 Atomic orbital electron populations 1.22193 0.97005 1.01286 1.02431 1.20934 0.93637 0.82810 1.02005 1.57707 1.78529 1.23150 1.23927 1.19219 0.97578 0.92249 0.78885 1.21374 1.18108 1.19380 0.98891 0.91908 1.24915 0.96130 0.94518 0.97918 1.69956 1.43597 1.20388 1.18180 0.86833 0.81594 0.80379 0.80192 1.20236 1.21362 1.19493 1.01910 0.72662 0.73812 0.72789 1.93550 1.64909 1.80121 1.59795 1.93576 1.86574 1.30871 1.85191 1.56155 1.24470 1.64870 1.42620 1.20899 0.86203 0.92664 0.95913 1.22442 0.95827 0.99205 1.01379 1.22121 0.95698 0.86901 0.91807 0.88286 1.22566 1.02611 1.03895 0.95767 1.87912 1.39646 1.22704 1.79600 1.22078 0.88415 0.87689 0.99296 0.91294 1.21741 1.01272 0.95985 1.00896 1.22775 0.98406 0.99052 1.00277 0.92599 0.92055 0.92502 0.89759 0.92458 0.95028 0.92842 0.92516 0.76256 0.86922 0.90045 0.91216 0.90388 0.92348 0.91053 0.92036 0.91006 0.92185 0.91269 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 10.24 37.16 0.38 -2.34 16 2 C 0.13 2.27 5.95 -4.04 -0.02 2.24 16 3 N -0.99 -19.56 2.92 -115.66 -0.34 -19.89 16 4 C 0.24 5.73 5.62 -5.19 -0.03 5.70 16 5 C -0.54 -12.98 7.87 -34.44 -0.27 -13.25 16 6 H 0.06 1.45 7.83 -52.49 -0.41 1.03 16 7 C 0.07 1.75 5.44 -17.82 -0.10 1.65 16 8 N -0.88 -24.04 13.32 55.43 0.74 -23.30 16 9 Si 0.88 19.39 29.55 -169.99 -5.02 14.36 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -5.61 6.62 56.52 0.37 -5.23 16 13 S 2.78 52.97 6.03 -107.50 -0.65 52.32 16 14 O -1.00 -20.04 17.17 -57.17 -0.98 -21.02 16 15 O -0.98 -21.66 15.58 -57.17 -0.89 -22.55 16 16 N -1.12 -17.37 5.56 -4.73 -0.03 -17.39 16 17 C 0.15 2.38 2.37 -67.75 -0.16 2.22 16 18 C -0.15 -2.02 5.16 -26.59 -0.14 -2.16 16 19 C 0.09 1.29 3.91 -26.68 -0.10 1.18 16 20 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 21 C -0.19 -3.00 8.63 37.16 0.32 -2.68 16 22 O -0.38 -5.59 10.24 -35.23 -0.36 -5.95 16 23 C 0.08 1.21 2.94 -26.69 -0.08 1.13 16 24 H 0.07 1.08 6.43 -51.93 -0.33 0.75 16 25 C -0.14 -1.71 9.57 37.15 0.36 -1.35 16 26 C -0.17 -2.50 5.03 -26.59 -0.13 -2.64 16 27 H 0.05 0.93 7.94 -51.93 -0.41 0.51 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.46 7.57 -51.92 -0.39 1.06 16 31 H 0.06 0.86 7.80 -51.93 -0.41 0.45 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.05 1.39 6.68 -51.93 -0.35 1.04 16 34 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.41 5.14 8.82 -34.48 -0.30 4.84 16 36 H 0.11 2.12 5.59 -51.92 -0.29 1.83 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.08 1.39 5.01 -51.93 -0.26 1.13 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.15 7.66 -51.93 -0.40 0.75 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.09 1.42 7.56 -51.93 -0.39 1.03 16 LS Contribution 370.70 15.07 5.59 5.59 Total: -1.00 -29.40 370.70 -9.68 -39.09 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -7.76 Total: 9.05 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 0.02 Total: -10.29 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.37 Total: -60.59 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -2.23 Total: -49.53 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.36 kcal Atomic # 16 Polarization: 52.97 SS G_CDS: -0.65 Total: 52.32 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.40 -9.68 -39.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554518492.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.611 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds