Wall clock time and date at job start Tue Mar 31 2020 13:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47080 * 2 1 4 4 C 1.46501 * 120.00027 * 275.75918 * 3 2 1 5 5 C 1.50701 * 109.47064 * 275.00242 * 4 3 2 6 6 H 1.07995 * 119.99899 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99859 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99582 * 0.02562 * 7 5 4 9 9 Si 1.86789 * 119.99873 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47411 * 90.00399 * 9 7 5 11 11 H 1.48505 * 109.47052 * 210.00124 * 9 7 5 12 12 H 1.48501 * 109.47410 * 330.00122 * 9 7 5 13 13 S 1.65606 * 120.00129 * 95.76309 * 3 2 1 14 14 O 1.42099 * 106.40086 * 162.15957 * 13 3 2 15 15 O 1.42106 * 106.39946 * 29.23759 * 13 3 2 16 16 N 1.65602 * 107.21672 * 275.70134 * 13 3 2 17 17 C 1.46500 * 119.99723 * 295.83208 * 16 13 3 18 18 C 1.53182 * 109.54226 * 263.97014 * 17 16 13 19 19 C 1.53106 * 109.15553 * 183.24362 * 18 17 16 20 20 H 1.09003 * 109.40335 * 297.49006 * 19 18 17 21 21 C 1.52996 * 109.47879 * 177.50364 * 19 18 17 22 22 O 1.42896 * 109.48915 * 57.47753 * 19 18 17 23 23 C 1.42905 * 114.09666 * 298.88886 * 22 19 18 24 24 H 1.08997 * 109.48413 * 181.14300 * 23 22 19 25 25 C 1.53001 * 109.47927 * 301.17517 * 23 22 19 26 26 C 1.53089 * 109.41829 * 61.15809 * 23 22 19 27 27 H 1.09004 * 109.47270 * 184.91778 * 1 2 3 28 28 H 1.08998 * 109.47226 * 304.91600 * 1 2 3 29 29 H 1.09000 * 109.47203 * 64.91701 * 1 2 3 30 30 H 1.08999 * 109.47195 * 239.99536 * 2 1 3 31 31 H 1.09001 * 109.46493 * 119.99679 * 2 1 3 32 32 H 1.09004 * 109.46864 * 35.00291 * 4 3 2 33 33 H 1.09002 * 109.46909 * 154.99982 * 4 3 2 34 34 H 0.96997 * 119.99015 * 179.97438 * 8 7 5 35 35 H 0.96993 * 119.99890 * 115.82894 * 16 13 3 36 36 H 1.08994 * 109.54661 * 24.14963 * 17 16 13 37 37 H 1.08993 * 109.52085 * 303.06114 * 18 17 16 38 38 H 1.09001 * 109.52156 * 63.25014 * 18 17 16 39 39 H 1.08996 * 109.47531 * 299.96904 * 21 19 18 40 40 H 1.09009 * 109.47161 * 59.96994 * 21 19 18 41 41 H 1.09005 * 109.47164 * 179.97438 * 21 19 18 42 42 H 1.09002 * 109.47211 * 179.97438 * 25 23 22 43 43 H 1.09003 * 109.47283 * 299.94195 * 25 23 22 44 44 H 1.08996 * 109.47276 * 59.94488 * 25 23 22 45 45 H 1.08996 * 109.52314 * 182.49014 * 26 23 22 46 46 H 1.08996 * 109.52722 * 62.29457 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1425 2.1143 -1.2623 5 6 3.4711 1.7971 -1.8988 6 1 4.1545 1.1172 -1.4120 7 6 3.8138 2.3742 -3.1032 8 7 2.9813 3.2018 -3.6963 9 14 5.4610 1.9817 -3.8918 10 1 5.3151 0.8020 -4.7820 11 1 5.9194 3.1486 -4.6877 12 1 6.4580 1.6823 -2.8328 13 16 2.4301 2.1139 1.4269 14 8 3.2348 3.2341 1.0851 15 8 2.8674 1.0794 2.2976 16 7 1.0376 2.7218 2.0855 17 6 0.3015 3.7820 1.3923 18 6 0.7058 5.1445 1.9638 19 6 -0.1267 6.2388 1.2904 20 1 0.0894 6.2524 0.2221 21 6 0.2270 7.5968 1.9000 22 8 -1.5161 5.9731 1.4923 23 6 -1.9601 4.7340 0.9358 24 1 -3.0289 4.6174 1.1146 25 6 -1.6906 4.7254 -0.5702 26 6 -1.2030 3.5790 1.5965 27 1 -0.3634 -1.0239 0.0881 28 1 -0.3633 0.5882 0.8427 29 1 -0.3633 0.4357 -0.9307 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.3374 1.8183 -1.9350 33 1 2.0788 3.1850 -1.0684 34 1 3.2226 3.6081 -4.5434 35 1 0.7094 2.3760 2.9301 36 1 0.5326 3.7501 0.3276 37 1 0.5221 5.1578 3.0381 38 1 1.7644 5.3203 1.7722 39 1 0.0114 7.5827 2.9684 40 1 1.2869 7.7993 1.7459 41 1 -0.3655 8.3758 1.4202 42 1 -2.0288 3.7801 -0.9945 43 1 -2.2297 5.5478 -1.0405 44 1 -0.6217 4.8425 -0.7488 45 1 -1.5082 2.6363 1.1424 46 1 -1.4264 3.5598 2.6631 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554518493.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:54 Heat of formation + Delta-G solvation = -138.687316 kcal Electronic energy + Delta-G solvation = -27808.611204 eV Core-core repulsion = 24052.551018 eV Total energy + Delta-G solvation = -3756.060186 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.97079 -36.64767 -36.12075 -35.49583 -35.15457 -33.34292 -32.69479 -31.26473 -30.02334 -28.52324 -26.67559 -26.62560 -23.23463 -22.88852 -22.12707 -21.73226 -19.58911 -18.70284 -17.42617 -16.92304 -16.51165 -16.24559 -16.14139 -15.51996 -14.91554 -14.77480 -14.37941 -14.14315 -13.88737 -13.77935 -13.36371 -12.94212 -12.86746 -12.58527 -12.23026 -12.12646 -11.99336 -11.92674 -11.77058 -11.68171 -11.60387 -11.42302 -11.37460 -11.30610 -11.11151 -11.03515 -10.99415 -10.90195 -10.50916 -10.44707 -10.02229 -9.98734 -9.78186 -9.47248 -9.23684 -8.46397 -8.10795 -6.09342 -4.12915 1.22273 3.29613 3.36305 3.41726 3.48077 3.76454 4.11849 4.42669 4.64348 4.76277 4.85975 4.93765 5.07924 5.10635 5.21303 5.28979 5.34912 5.37029 5.40256 5.47394 5.55164 5.61790 5.70207 5.72245 5.76478 5.81615 5.94827 5.97413 6.00609 6.07830 6.16268 6.24071 6.25678 6.32259 6.41017 6.55385 6.61509 7.11736 7.23997 7.29529 7.39041 7.60912 7.88577 8.18085 8.89423 9.52472 10.99128 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012437 B = 0.005311 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.749335 B = 5270.398654 C = 5957.052857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.119 3.881 3 N -0.991 5.991 4 C 0.257 3.743 5 C -0.530 4.530 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 S 2.778 3.222 14 O -0.964 6.964 15 O -1.000 7.000 16 N -1.130 6.130 17 C 0.155 3.845 18 C -0.167 4.167 19 C 0.083 3.917 20 H 0.068 0.932 21 C -0.142 4.142 22 O -0.377 6.377 23 C 0.092 3.908 24 H 0.102 0.898 25 C -0.192 4.192 26 C -0.153 4.153 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.038 0.962 34 H 0.263 0.737 35 H 0.407 0.593 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.645 1.959 9.592 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.008 4.008 3 N -0.833 5.833 4 C 0.135 3.865 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.197 1.197 13 S 2.786 3.214 14 O -0.947 6.947 15 O -0.984 6.984 16 N -0.886 5.886 17 C 0.047 3.953 18 C -0.206 4.206 19 C 0.025 3.975 20 H 0.086 0.914 21 C -0.200 4.200 22 O -0.296 6.296 23 C 0.033 3.967 24 H 0.120 0.880 25 C -0.250 4.250 26 C -0.192 4.192 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.239 0.761 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.806 2.340 9.713 14.717 hybrid contribution 0.526 -0.622 -0.529 0.972 sum -10.280 1.717 9.183 13.891 Atomic orbital electron populations 1.22265 0.97260 1.01263 1.02168 1.21118 0.93011 0.83229 1.03448 1.57703 1.81016 1.21419 1.23175 1.19052 0.97466 0.90975 0.78965 1.21487 1.02467 1.27487 1.05456 0.92212 1.24913 0.97285 0.94789 0.96920 1.69912 1.36002 1.29976 1.17465 0.86531 0.84014 0.77838 0.79282 1.20624 1.21058 1.19737 1.02046 0.73285 0.73365 0.72670 1.93618 1.65258 1.52300 1.83499 1.93533 1.80044 1.58214 1.66587 1.56357 1.47040 1.50592 1.34617 1.20761 0.91315 0.86331 0.96859 1.22787 1.02031 0.94488 1.01306 1.22109 0.81168 0.94717 0.99540 0.91405 1.21746 1.01777 0.95095 1.01342 1.87940 1.24657 1.38354 1.78668 1.22118 0.98494 0.83513 0.92532 0.87989 1.22517 1.03563 1.03009 0.95872 1.22524 0.94799 0.99732 1.02161 0.92338 0.93147 0.92032 0.89757 0.90808 0.94756 0.94446 0.92718 0.76060 0.88842 0.90878 0.89218 0.92083 0.90855 0.91949 0.91140 0.91745 0.91190 0.90093 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.23 37.16 0.38 -1.89 16 2 C 0.12 1.99 6.41 -4.04 -0.03 1.97 16 3 N -0.99 -19.77 2.83 -115.66 -0.33 -20.10 16 4 C 0.26 6.17 4.88 -5.19 -0.03 6.14 16 5 C -0.53 -14.54 9.38 -34.44 -0.32 -14.86 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.76 5.46 -17.81 -0.10 1.66 16 8 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 9 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 13 S 2.78 54.14 6.01 -107.50 -0.65 53.49 16 14 O -0.96 -22.49 16.37 -57.17 -0.94 -23.42 16 15 O -1.00 -20.90 16.82 -57.17 -0.96 -21.87 16 16 N -1.13 -16.24 5.53 -4.73 -0.03 -16.27 16 17 C 0.15 2.15 2.47 -67.74 -0.17 1.99 16 18 C -0.17 -2.28 5.03 -26.58 -0.13 -2.42 16 19 C 0.08 1.06 2.93 -26.68 -0.08 0.98 16 20 H 0.07 0.92 6.34 -51.93 -0.33 0.59 16 21 C -0.14 -1.56 9.56 37.16 0.36 -1.20 16 22 O -0.38 -4.80 10.24 -35.23 -0.36 -5.16 16 23 C 0.09 1.02 3.91 -26.68 -0.10 0.91 16 24 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 25 C -0.19 -2.26 8.65 37.16 0.32 -1.94 16 26 C -0.15 -1.69 5.18 -26.59 -0.14 -1.83 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.61 8.01 -51.93 -0.42 0.20 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 31 H 0.07 1.19 6.99 -51.93 -0.36 0.83 16 32 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 33 H 0.04 0.95 6.62 -51.93 -0.34 0.61 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.41 4.77 8.85 -34.47 -0.30 4.46 16 36 H 0.09 1.49 5.36 -51.93 -0.28 1.22 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.09 1.39 7.82 -51.93 -0.41 0.99 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.96 4.98 -51.93 -0.26 0.70 16 45 H 0.08 0.83 8.01 -51.93 -0.42 0.41 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 372.78 15.07 5.62 5.62 Total: -1.00 -32.47 372.78 -9.69 -42.16 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.73 Total: 4.12 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -0.04 Total: -10.49 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: 0.38 Total: -61.02 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -2.26 Total: -50.45 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 54.14 SS G_CDS: -0.65 Total: 53.49 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.47 -9.69 -42.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554518493.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.526 kcal (2) G-P(sol) polarization free energy of solvation -32.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds