Wall clock time and date at job start Tue Mar 31 2020 13:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46980 * 2 1 4 4 C 1.46498 * 119.99709 * 275.72943 * 3 2 1 5 5 C 1.50701 * 109.47297 * 275.00509 * 4 3 2 6 6 H 1.07993 * 120.00139 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99746 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00466 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99741 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47026 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47085 * 119.99434 * 9 7 5 12 12 H 1.48501 * 109.46804 * 239.99302 * 9 7 5 13 13 S 1.65600 * 120.00098 * 95.73420 * 3 2 1 14 14 O 1.42101 * 106.40129 * 337.93481 * 13 3 2 15 15 O 1.42096 * 106.39987 * 205.01477 * 13 3 2 16 16 N 1.65597 * 107.21678 * 91.47438 * 13 3 2 17 17 C 1.46501 * 120.00123 * 67.87520 * 16 13 3 18 18 H 1.08999 * 109.54167 * 338.51091 * 17 16 13 19 19 C 1.53179 * 109.54355 * 218.33485 * 17 16 13 20 20 C 1.53089 * 109.16777 * 297.11583 * 19 17 16 21 21 H 1.09007 * 109.48045 * 62.36601 * 20 19 17 22 22 C 1.52998 * 109.48394 * 182.40868 * 20 19 17 23 23 O 1.42907 * 109.40836 * 302.39143 * 20 19 17 24 24 C 1.42899 * 114.10246 * 61.16021 * 23 20 19 25 25 H 1.08996 * 109.49068 * 58.82513 * 24 23 20 26 26 C 1.53001 * 109.48406 * 178.85763 * 24 23 20 27 27 C 1.53096 * 109.40968 * 298.83963 * 24 23 20 28 28 H 1.09007 * 109.46840 * 305.02272 * 1 2 3 29 29 H 1.08992 * 109.46960 * 65.02348 * 1 2 3 30 30 H 1.09000 * 109.47044 * 185.02341 * 1 2 3 31 31 H 1.08995 * 109.47334 * 239.99552 * 2 1 3 32 32 H 1.09001 * 109.46846 * 119.99706 * 2 1 3 33 33 H 1.09000 * 109.47280 * 35.00485 * 4 3 2 34 34 H 1.09000 * 109.47087 * 155.00377 * 4 3 2 35 35 H 0.97001 * 120.00429 * 180.02562 * 8 7 5 36 36 H 0.97008 * 120.00229 * 247.86964 * 16 13 3 37 37 H 1.09005 * 109.52183 * 57.02237 * 19 17 16 38 38 H 1.08997 * 109.52373 * 177.19922 * 19 17 16 39 39 H 1.08994 * 109.46932 * 59.99370 * 22 20 19 40 40 H 1.08999 * 109.47289 * 179.97438 * 22 20 19 41 41 H 1.09001 * 109.46796 * 299.99800 * 22 20 19 42 42 H 1.08992 * 109.47313 * 179.97438 * 26 24 23 43 43 H 1.09000 * 109.46670 * 299.94387 * 26 24 23 44 44 H 1.09001 * 109.46558 * 59.93676 * 26 24 23 45 45 H 1.09000 * 109.52127 * 297.69721 * 27 24 23 46 46 H 1.09005 * 109.51700 * 177.51568 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1430 2.1140 -1.2624 5 6 3.4720 1.7968 -1.8983 6 1 4.1555 1.1176 -1.4106 7 6 3.8156 2.3744 -3.1021 8 7 2.9835 3.2019 -3.6957 9 14 5.4632 1.9817 -3.8900 10 1 6.2100 1.0309 -3.0278 11 1 5.2404 1.3701 -5.2247 12 1 6.2491 3.2323 -4.0435 13 16 2.4294 2.1142 1.4270 14 8 1.7435 1.4091 2.4524 15 8 2.2867 3.5121 1.2157 16 7 4.0443 1.8406 1.6711 17 6 5.0343 2.4627 0.7883 18 1 4.5612 2.7355 -0.1550 19 6 6.1756 1.4761 0.5227 20 6 6.8824 1.1579 1.8429 21 1 6.1807 0.6765 2.5241 22 6 8.0614 0.2198 1.5773 23 8 7.3606 2.3701 2.4297 24 6 6.3325 3.3116 2.7437 25 1 5.6237 2.8584 3.4367 26 6 6.9555 4.5511 3.3890 27 6 5.6036 3.7162 1.4596 28 1 -0.3633 0.5898 0.8416 29 1 -0.3633 0.4339 -0.9315 30 1 -0.3633 -1.0237 0.0900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.3384 1.8180 -1.9354 34 1 2.0793 3.1848 -1.0688 35 1 3.2251 3.6080 -4.5429 36 1 4.3348 1.2686 2.3986 37 1 5.7717 0.5583 0.0954 38 1 6.8868 1.9207 -0.1734 39 1 8.7630 0.7018 0.8966 40 1 8.5648 -0.0063 2.5173 41 1 7.6966 -0.7042 1.1288 42 1 6.1713 5.2693 3.6280 43 1 7.4744 4.2628 4.3032 44 1 7.6647 5.0038 2.6960 45 1 6.3034 4.2062 0.7826 46 1 4.7907 4.4005 1.7025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554518494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:34 Heat of formation + Delta-G solvation = -142.076989 kcal Electronic energy + Delta-G solvation = -28043.131142 eV Core-core repulsion = 24286.923969 eV Total energy + Delta-G solvation = -3756.207173 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.68709 -36.67001 -36.09072 -35.20743 -35.08960 -33.57545 -32.79303 -30.85465 -29.97736 -28.84591 -26.68372 -26.20195 -23.18835 -22.72426 -21.73689 -21.64365 -20.05659 -18.59314 -17.20410 -16.88875 -16.45717 -16.36229 -15.77102 -15.49307 -15.22146 -14.52388 -14.29235 -13.92134 -13.90739 -13.38984 -13.00422 -12.91654 -12.68126 -12.49996 -12.26587 -12.11592 -11.99071 -11.93859 -11.83814 -11.67935 -11.60684 -11.42496 -11.34681 -11.13481 -11.11311 -11.00792 -10.88054 -10.78172 -10.54175 -10.38796 -10.08862 -10.08494 -9.77997 -9.27042 -8.92891 -8.57691 -8.09635 -6.19683 -4.26477 1.30806 3.18019 3.27286 3.28155 3.54568 3.79799 4.15822 4.28278 4.87662 4.97755 5.04405 5.05252 5.10222 5.17976 5.26687 5.34140 5.40006 5.56102 5.61114 5.64089 5.72243 5.76577 5.81038 5.84575 5.86116 5.97321 6.08850 6.09975 6.17129 6.18129 6.29954 6.32088 6.40935 6.48567 6.62564 6.65206 6.72859 7.27227 7.33421 7.44248 7.45034 7.63941 7.78564 8.07330 8.79107 9.39171 10.87723 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009984 B = 0.007230 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.776442 B = 3871.750997 C = 5338.424717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.131 3.869 3 N -0.992 5.992 4 C 0.242 3.758 5 C -0.545 4.545 6 H 0.069 0.931 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.282 1.282 13 S 2.785 3.215 14 O -1.003 7.003 15 O -0.979 6.979 16 N -1.124 6.124 17 C 0.140 3.860 18 H 0.135 0.865 19 C -0.150 4.150 20 C 0.087 3.913 21 H 0.053 0.947 22 C -0.143 4.143 23 O -0.381 6.381 24 C 0.088 3.912 25 H 0.055 0.945 26 C -0.144 4.144 27 C -0.165 4.165 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.265 0.735 36 H 0.401 0.599 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.689 -4.370 9.612 11.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 N -0.834 5.834 4 C 0.120 3.880 5 C -0.584 4.584 6 H 0.087 0.913 7 C -0.136 4.136 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.207 1.207 13 S 2.792 3.208 14 O -0.987 6.987 15 O -0.962 6.962 16 N -0.882 5.882 17 C 0.034 3.966 18 H 0.152 0.848 19 C -0.189 4.189 20 C 0.029 3.971 21 H 0.071 0.929 22 C -0.200 4.200 23 O -0.301 6.301 24 C 0.031 3.969 25 H 0.073 0.927 26 C -0.201 4.201 27 C -0.204 4.204 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.233 0.767 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.205 -3.584 9.884 11.732 hybrid contribution 0.985 -0.732 -0.690 1.408 sum 6.191 -4.316 9.195 11.895 Atomic orbital electron populations 1.22193 0.96986 1.01290 1.02313 1.20961 0.93620 0.82898 1.02075 1.57714 1.78496 1.22845 1.24338 1.19227 0.97444 0.92166 0.79192 1.21644 1.02679 1.28010 1.06066 0.91336 1.24954 0.97076 0.94741 0.96853 1.69938 1.35728 1.29247 1.17241 0.86628 0.83973 0.78471 0.79572 1.19299 1.20955 1.20747 1.01778 0.72617 0.73727 0.72635 1.93540 1.72293 1.75336 1.57572 1.93575 1.85562 1.31169 1.85912 1.56170 1.25813 1.63819 1.42366 1.21205 0.89482 0.91105 0.94832 0.84791 1.22443 0.97817 1.01032 0.97591 1.22044 0.95675 0.85518 0.93839 0.92896 1.21752 0.97832 0.98351 1.02086 1.87867 1.33558 1.27314 1.81324 1.22030 0.89378 0.89893 0.95637 0.92719 1.21764 1.01416 0.96209 1.00693 1.22702 1.01078 0.98910 0.97731 0.92795 0.92125 0.92393 0.90251 0.91906 0.94362 0.93146 0.92532 0.76651 0.89900 0.90151 0.91851 0.92251 0.91138 0.91104 0.92304 0.91847 0.90215 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 10.23 37.16 0.38 -2.24 16 2 C 0.13 2.21 6.08 -4.04 -0.02 2.18 16 3 N -0.99 -19.54 2.83 -115.66 -0.33 -19.87 16 4 C 0.24 5.67 5.28 -5.19 -0.03 5.64 16 5 C -0.54 -13.10 6.99 -34.44 -0.24 -13.34 16 6 H 0.07 1.56 6.57 -52.49 -0.34 1.21 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.88 -24.11 13.29 55.43 0.74 -23.37 16 9 Si 0.89 19.52 29.54 -169.99 -5.02 14.50 16 10 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 S 2.78 53.63 6.03 -107.50 -0.65 52.98 16 14 O -1.00 -20.10 17.04 -57.17 -0.97 -21.07 16 15 O -0.98 -21.96 16.34 -57.17 -0.93 -22.89 16 16 N -1.12 -18.09 4.96 -4.74 -0.02 -18.11 16 17 C 0.14 2.36 2.63 -67.75 -0.18 2.19 16 18 H 0.13 2.70 4.87 -51.93 -0.25 2.44 16 19 C -0.15 -2.25 4.87 -26.59 -0.13 -2.38 16 20 C 0.09 1.15 3.07 -26.69 -0.08 1.07 16 21 H 0.05 0.65 6.72 -51.93 -0.35 0.31 16 22 C -0.14 -1.61 9.56 37.16 0.36 -1.25 16 23 O -0.38 -5.48 10.05 -35.23 -0.35 -5.83 16 24 C 0.09 1.22 3.10 -26.68 -0.08 1.13 16 25 H 0.05 0.74 7.54 -51.93 -0.39 0.35 16 26 C -0.14 -1.68 9.57 37.16 0.36 -1.32 16 27 C -0.16 -2.58 5.11 -26.59 -0.14 -2.71 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 32 H 0.06 0.95 7.54 -51.93 -0.39 0.56 16 33 H 0.04 0.95 8.11 -51.93 -0.42 0.52 16 34 H 0.05 1.31 6.93 -51.93 -0.36 0.95 16 35 H 0.26 6.87 8.31 -40.82 -0.34 6.54 16 36 H 0.40 5.49 6.99 -34.47 -0.24 5.25 16 37 H 0.08 1.25 7.73 -51.93 -0.40 0.85 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.08 1.39 8.06 -51.93 -0.42 0.97 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -29.47 370.37 -9.65 -39.12 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -7.78 Total: 8.38 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: 0.39 Total: -61.35 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -2.26 Total: -49.80 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 16 Polarization: 53.63 SS G_CDS: -0.65 Total: 52.98 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.47 -9.65 -39.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554518494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.954 kcal (2) G-P(sol) polarization free energy of solvation -29.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds