Wall clock time and date at job start Tue Mar 31 2020 13:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46626 * 2 1 4 4 C 1.46502 * 120.00155 * 274.99406 * 3 2 1 5 5 C 1.50696 * 109.47003 * 280.12338 * 4 3 2 6 6 H 1.07995 * 120.00452 * 4.15909 * 5 4 3 7 7 C 1.37882 * 119.99866 * 184.15274 * 5 4 3 8 8 N 1.31515 * 119.99915 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00107 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47293 * 90.00244 * 9 7 5 11 11 H 1.48508 * 109.47048 * 210.00237 * 9 7 5 12 12 H 1.48501 * 109.47100 * 330.00226 * 9 7 5 13 13 S 1.65603 * 119.99847 * 95.00181 * 3 2 1 14 14 O 1.42104 * 106.40289 * 330.07746 * 13 3 2 15 15 O 1.42101 * 106.39972 * 197.16163 * 13 3 2 16 16 N 1.65596 * 107.22419 * 83.62263 * 13 3 2 17 17 C 1.46498 * 119.99948 * 65.40184 * 16 13 3 18 18 C 1.53006 * 109.47045 * 165.64715 * 17 16 13 19 19 C 1.52996 * 109.47091 * 180.02562 * 18 17 16 20 20 C 1.53006 * 109.47091 * 179.97438 * 19 18 17 21 21 O 1.42897 * 112.84823 * 53.80053 * 20 19 18 22 22 C 1.53781 * 113.61535 * 282.49902 * 20 19 18 23 23 C 1.53776 * 87.08095 * 220.01851 * 22 20 19 24 24 C 1.53781 * 113.61497 * 184.99994 * 20 19 18 25 25 H 1.08991 * 109.47399 * 300.00018 * 1 2 3 26 26 H 1.09003 * 109.47046 * 60.00521 * 1 2 3 27 27 H 1.09005 * 109.46219 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47871 * 240.00116 * 2 1 3 29 29 H 1.09003 * 109.47046 * 119.99479 * 2 1 3 30 30 H 1.09004 * 109.46566 * 40.12258 * 4 3 2 31 31 H 1.08994 * 109.46996 * 160.12460 * 4 3 2 32 32 H 0.96997 * 119.99963 * 179.97438 * 8 7 5 33 33 H 0.97007 * 119.99683 * 245.41397 * 16 13 3 34 34 H 1.09006 * 109.46990 * 45.65217 * 17 16 13 35 35 H 1.08999 * 109.47816 * 285.64705 * 17 16 13 36 36 H 1.08996 * 109.46791 * 60.00319 * 18 17 16 37 37 H 1.08999 * 109.46805 * 300.00609 * 18 17 16 38 38 H 1.08998 * 109.47003 * 300.00028 * 19 18 17 39 39 H 1.09006 * 109.47271 * 60.00302 * 19 18 17 40 40 H 0.96700 * 114.00605 * 309.67548 * 21 20 19 41 41 H 1.09003 * 113.61048 * 334.56474 * 22 20 19 42 42 H 1.08995 * 113.61550 * 105.46439 * 22 20 19 43 43 H 1.09003 * 113.61348 * 270.88490 * 23 22 20 44 44 H 1.09004 * 113.61511 * 139.97765 * 23 22 20 45 45 H 1.08992 * 113.61302 * 254.53001 * 24 20 19 46 46 H 1.09000 * 113.61039 * 25.43195 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.4376 1.6936 -1.9434 6 1 4.0483 0.9131 -1.5143 7 6 3.8284 2.3101 -3.1131 8 7 3.0850 3.2609 -3.6355 9 14 5.4140 1.7950 -3.9558 10 1 5.1298 0.7012 -4.9192 11 1 5.9890 2.9564 -4.6811 12 1 6.3836 1.3180 -2.9372 13 16 2.4120 2.1203 1.4287 14 8 1.5763 1.5432 2.4227 15 8 2.4520 3.5153 1.1612 16 7 3.9616 1.6712 1.8022 17 6 5.0728 2.0917 0.9452 18 6 6.3964 1.8656 1.6786 19 6 7.5569 2.3053 0.7838 20 6 8.8805 2.0798 1.5175 21 8 9.0308 0.7402 1.9917 22 6 9.1860 3.1491 2.5797 23 6 10.6478 3.0892 2.1061 24 6 10.1067 2.6034 0.7512 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0278 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.3118 1.8788 -1.9111 31 1 2.1833 3.1802 -1.0655 32 1 3.3601 3.6949 -4.4582 33 1 4.1334 1.1296 2.5884 34 1 4.9665 3.1497 0.7053 35 1 5.0631 1.5078 0.0249 36 1 6.5027 0.8077 1.9185 37 1 6.4061 2.4496 2.5990 38 1 7.5473 1.7217 -0.1367 39 1 7.4504 3.3634 0.5443 40 1 8.2722 0.4134 2.4945 41 1 8.7033 4.1071 2.3862 42 1 9.0438 2.8013 3.6029 43 1 11.2463 2.3438 2.6299 44 1 11.1317 4.0648 2.0586 45 1 10.7077 1.8150 0.2983 46 1 9.8756 3.4121 0.0579 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568263777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:08 Heat of formation + Delta-G solvation = -123.645660 kcal Electronic energy + Delta-G solvation = -26606.331007 eV Core-core repulsion = 22850.923076 eV Total energy + Delta-G solvation = -3755.407931 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.87533 -36.67585 -36.09367 -35.75834 -35.19063 -34.71002 -32.73351 -31.90479 -29.92941 -26.85679 -26.57736 -25.83679 -23.17855 -23.06687 -21.73089 -21.18596 -19.77364 -18.74666 -17.09782 -16.93101 -16.71744 -16.40022 -15.80268 -15.49476 -15.26546 -15.06015 -14.68642 -14.31173 -13.82933 -13.69228 -13.27202 -13.01562 -12.94647 -12.68722 -12.32729 -12.07356 -11.99140 -11.81883 -11.71182 -11.54694 -11.40160 -11.34557 -11.28967 -11.13324 -11.08671 -11.00762 -10.95290 -10.82463 -10.53187 -10.38558 -10.12751 -10.01598 -9.81555 -9.66658 -8.97371 -8.52915 -8.06548 -6.13971 -4.20675 1.31111 3.21455 3.29494 3.29991 3.54392 3.93334 4.17164 4.32331 4.39668 4.50608 4.68190 4.73896 5.02840 5.07188 5.19319 5.21063 5.26320 5.41300 5.53230 5.57611 5.61096 5.73127 5.74897 5.75994 5.79164 5.82162 5.87461 6.01652 6.10956 6.15419 6.19906 6.24026 6.31842 6.37860 6.53463 6.67644 6.71654 7.28217 7.37505 7.44744 7.53744 7.68079 7.83345 8.13486 8.83593 9.44916 10.93942 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010863 B = 0.004851 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.898721 B = 5770.998763 C = 7530.252228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.992 5.992 4 C 0.243 3.757 5 C -0.539 4.539 6 H 0.064 0.936 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.271 1.271 13 S 2.785 3.215 14 O -1.002 7.002 15 O -0.979 6.979 16 N -1.132 6.132 17 C 0.118 3.882 18 C -0.126 4.126 19 C -0.139 4.139 20 C 0.109 3.891 21 O -0.545 6.545 22 C -0.165 4.165 23 C -0.136 4.136 24 C -0.129 4.129 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.264 0.736 33 H 0.405 0.595 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.377 0.623 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.656 -3.889 10.211 13.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.834 5.834 4 C 0.121 3.879 5 C -0.578 4.578 6 H 0.082 0.918 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.196 1.196 13 S 2.793 3.207 14 O -0.986 6.986 15 O -0.963 6.963 16 N -0.890 5.890 17 C -0.008 4.008 18 C -0.165 4.165 19 C -0.177 4.177 20 C 0.068 3.932 21 O -0.351 6.351 22 C -0.203 4.203 23 C -0.173 4.173 24 C -0.167 4.167 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.236 0.764 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.226 0.774 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.612 -2.976 10.074 13.583 hybrid contribution 0.641 -0.814 -0.287 1.075 sum 9.253 -3.790 9.787 13.992 Atomic orbital electron populations 1.22213 0.96963 1.01317 1.02495 1.20941 0.93656 0.82896 1.01935 1.57718 1.78620 1.22928 1.24088 1.19215 0.97210 0.92574 0.78920 1.21516 1.07303 1.20642 1.08346 0.91831 1.24948 0.97052 0.94735 0.97041 1.69932 1.37974 1.24159 1.20434 0.86646 0.83574 0.78200 0.79891 1.20675 1.21109 1.19568 1.01735 0.72623 0.73730 0.72626 1.93547 1.65564 1.79814 1.59692 1.93574 1.86555 1.30977 1.85181 1.55997 1.25361 1.69944 1.37730 1.21398 0.84257 1.01672 0.93489 1.21743 0.94267 1.01299 0.99213 1.22096 0.92851 1.03256 0.99547 1.22215 0.94512 0.82166 0.94295 1.86452 1.45771 1.28235 1.74682 1.23627 0.97159 1.00041 0.99494 1.22753 0.96393 1.01197 0.96999 1.23039 0.96111 1.00610 0.96892 0.92474 0.92102 0.92465 0.90186 0.92255 0.94828 0.92631 0.92567 0.76355 0.90339 0.89497 0.91730 0.91482 0.90349 0.90084 0.77418 0.89234 0.91229 0.90100 0.91541 0.90756 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 10.24 37.16 0.38 -2.30 16 2 C 0.13 2.25 6.02 -4.04 -0.02 2.22 16 3 N -0.99 -19.84 2.84 -115.66 -0.33 -20.17 16 4 C 0.24 5.84 5.46 -5.19 -0.03 5.81 16 5 C -0.54 -13.38 8.51 -34.44 -0.29 -13.67 16 6 H 0.06 1.50 6.47 -52.49 -0.34 1.16 16 7 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -24.71 13.29 55.43 0.74 -23.97 16 9 Si 0.89 19.90 29.54 -169.99 -5.02 14.88 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 13 S 2.78 53.89 6.07 -107.50 -0.65 53.24 16 14 O -1.00 -20.08 17.17 -57.17 -0.98 -21.06 16 15 O -0.98 -22.56 16.01 -57.17 -0.92 -23.48 16 16 N -1.13 -17.37 6.06 -10.61 -0.06 -17.44 16 17 C 0.12 1.84 6.21 -4.04 -0.03 1.82 16 18 C -0.13 -1.47 4.92 -26.73 -0.13 -1.60 16 19 C -0.14 -1.68 4.85 -26.73 -0.13 -1.81 16 20 C 0.11 1.20 1.38 -89.80 -0.12 1.08 16 21 O -0.54 -6.22 13.39 -35.23 -0.47 -6.69 16 22 C -0.17 -1.60 7.32 -25.92 -0.19 -1.79 16 23 C -0.14 -1.29 8.02 -25.92 -0.21 -1.50 16 24 C -0.13 -1.37 7.47 -25.92 -0.19 -1.56 16 25 H 0.06 0.94 7.96 -51.93 -0.41 0.52 16 26 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16 29 H 0.06 0.88 7.78 -51.93 -0.40 0.48 16 30 H 0.03 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.06 1.49 6.77 -51.93 -0.35 1.14 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.40 4.95 8.65 -34.47 -0.30 4.66 16 34 H 0.08 1.38 7.76 -51.93 -0.40 0.97 16 35 H 0.09 1.52 5.86 -51.93 -0.30 1.22 16 36 H 0.06 0.64 6.75 -51.93 -0.35 0.29 16 37 H 0.07 0.71 8.05 -51.93 -0.42 0.29 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.08 0.97 8.05 -51.93 -0.42 0.55 16 40 H 0.38 3.19 7.18 45.56 0.33 3.51 16 41 H 0.09 0.83 8.03 -51.93 -0.42 0.42 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 LS Contribution 380.42 15.07 5.73 5.73 Total: -1.00 -31.41 380.42 -10.17 -41.58 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -7.14 Total: 9.06 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -1.06 Total: -11.69 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: 0.34 Total: -61.58 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -2.37 Total: -51.23 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 53.89 SS G_CDS: -0.65 Total: 53.24 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.41 -10.17 -41.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568263777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.064 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds