Wall clock time and date at job start Tue Mar 31 2020 13:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47120 * 2 1 4 4 C 1.46489 * 120.00051 * 274.99959 * 3 2 1 5 5 C 1.50706 * 109.47499 * 275.00002 * 4 3 2 6 6 H 1.08003 * 119.98953 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00408 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99993 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99879 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46902 * 60.00428 * 9 7 5 11 11 H 1.48503 * 109.47048 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47210 * 300.00348 * 9 7 5 13 13 S 1.65606 * 119.99819 * 94.99712 * 3 2 1 14 14 O 1.42105 * 106.40008 * 156.45998 * 13 3 2 15 15 O 1.42098 * 106.40370 * 23.54183 * 13 3 2 16 16 N 1.65595 * 107.22013 * 269.99910 * 13 3 2 17 17 C 1.47424 * 125.65026 * 269.69506 * 16 13 3 18 18 C 1.55130 * 104.72314 * 155.81322 * 17 16 13 19 19 C 1.55167 * 101.48435 * 37.29840 * 18 17 16 20 20 H 1.08993 * 110.87257 * 82.76549 * 19 18 17 21 21 C 1.52998 * 110.71955 * 205.96706 * 19 18 17 22 22 C 1.53001 * 109.47170 * 288.52027 * 21 19 18 23 23 C 1.52998 * 109.46863 * 179.97438 * 22 21 19 24 24 O 1.42899 * 109.46966 * 179.97438 * 23 22 21 25 25 C 1.47024 * 125.64769 * 90.00292 * 16 13 3 26 26 H 1.08997 * 109.47066 * 299.99887 * 1 2 3 27 27 H 1.08998 * 109.46975 * 60.00025 * 1 2 3 28 28 H 1.09002 * 109.46940 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47463 * 239.99752 * 2 1 3 30 30 H 1.09007 * 109.47186 * 119.99994 * 2 1 3 31 31 H 1.09000 * 109.47424 * 35.00059 * 4 3 2 32 32 H 1.08996 * 109.47539 * 154.99888 * 4 3 2 33 33 H 0.96998 * 119.99726 * 179.97438 * 8 7 5 34 34 H 1.08992 * 110.36680 * 274.74523 * 17 16 13 35 35 H 1.09003 * 110.36383 * 37.07276 * 17 16 13 36 36 H 1.08999 * 111.19540 * 279.19433 * 18 17 16 37 37 H 1.08995 * 110.93946 * 155.28632 * 18 17 16 38 38 H 1.09006 * 109.47185 * 48.52120 * 21 19 18 39 39 H 1.09000 * 109.47213 * 168.51940 * 21 19 18 40 40 H 1.08998 * 109.46848 * 300.00183 * 22 21 19 41 41 H 1.09001 * 109.46658 * 60.00110 * 22 21 19 42 42 H 1.08998 * 109.47722 * 299.99873 * 23 22 21 43 43 H 1.09001 * 109.47210 * 60.00673 * 23 22 21 44 44 H 0.96698 * 114.00354 * 180.02562 * 24 23 22 45 45 H 1.09006 * 109.87718 * 300.43924 * 25 16 13 46 46 H 1.08996 * 109.88237 * 61.44768 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1583 2.1087 -1.2638 5 6 3.4948 1.7888 -1.8823 6 1 4.1724 1.1117 -1.3834 7 6 3.8526 2.3606 -3.0848 8 7 3.0276 3.1855 -3.6919 9 14 5.5096 1.9646 -3.8510 10 1 5.6004 0.5046 -4.1068 11 1 5.6514 2.7019 -5.1322 12 1 6.5944 2.3729 -2.9227 13 16 2.4121 2.1202 1.4288 14 8 3.3284 3.1571 1.1050 15 8 2.7095 1.0800 2.3500 16 7 1.0431 2.8643 1.9895 17 6 0.6326 4.2479 1.6888 18 6 -0.9060 4.2545 1.8866 19 6 -1.0646 3.3098 3.1073 20 1 -0.8937 3.8479 4.0396 21 6 -2.4471 2.6544 3.1085 22 6 -3.5066 3.6994 3.4641 23 6 -4.8891 3.0440 3.4646 24 8 -5.8786 4.0198 3.7973 25 6 0.0389 2.2564 2.8747 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.3618 1.8098 -1.9452 32 1 2.0922 3.1802 -1.0756 33 1 3.2795 3.5880 -4.5377 34 1 1.1092 4.9435 2.3795 35 1 0.8833 4.5027 0.6591 36 1 -1.4174 3.8522 1.0122 37 1 -1.2645 5.2571 2.1194 38 1 -2.6567 2.2464 2.1196 39 1 -2.4677 1.8510 3.8448 40 1 -3.2970 4.1073 4.4529 41 1 -3.4860 4.5027 2.7277 42 1 -5.0985 2.6364 2.4757 43 1 -4.9100 2.2404 4.2008 44 1 -6.7814 3.6738 3.8169 45 1 -0.3868 1.3722 2.4002 46 1 0.4990 1.9823 3.8240 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569002041.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:06 Heat of formation + Delta-G solvation = -140.352729 kcal Electronic energy + Delta-G solvation = -26599.990306 eV Core-core repulsion = 22843.857902 eV Total energy + Delta-G solvation = -3756.132404 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -38.90791 -37.29401 -36.62848 -36.01484 -35.13682 -34.17704 -32.66420 -30.27615 -30.02311 -29.15155 -26.59303 -25.36841 -23.12909 -22.35393 -21.83376 -21.53856 -20.34862 -18.42029 -17.65932 -17.43299 -16.74183 -16.28805 -16.08291 -15.69888 -15.42179 -14.62603 -14.46926 -14.03869 -13.91468 -13.60107 -13.44261 -13.30437 -13.01411 -12.79104 -12.47832 -12.38712 -12.08384 -11.91377 -11.70901 -11.64241 -11.43732 -11.33408 -11.31355 -11.11258 -10.99917 -10.92612 -10.82385 -10.73598 -10.61639 -10.45740 -10.33773 -10.28284 -9.97738 -9.76356 -8.77929 -8.42482 -8.05799 -6.05570 -4.09311 1.19280 3.34232 3.37679 3.42386 3.52667 3.81960 4.11985 4.41539 4.45416 4.59468 4.62301 4.75828 4.94014 5.03241 5.04775 5.24388 5.28419 5.29343 5.34473 5.42758 5.46952 5.55898 5.62153 5.65262 5.71165 5.73541 5.84849 5.86813 5.89162 6.01831 6.06230 6.09566 6.24427 6.28519 6.37595 6.55535 6.62026 6.72292 7.25155 7.27637 7.43126 7.64417 7.92219 8.22006 8.92723 9.55760 11.02981 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019210 B = 0.003393 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.209222 B = 8250.675105 C = 8531.925072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.117 3.883 3 N -0.990 5.990 4 C 0.260 3.740 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 S 2.791 3.209 14 O -0.960 6.960 15 O -0.995 6.995 16 N -1.023 6.023 17 C 0.122 3.878 18 C -0.125 4.125 19 C -0.096 4.096 20 H 0.084 0.916 21 C -0.108 4.108 22 C -0.119 4.119 23 C 0.074 3.926 24 O -0.577 6.577 25 C 0.124 3.876 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.035 0.965 33 H 0.264 0.736 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.044 0.956 44 H 0.378 0.622 45 H 0.066 0.934 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.220 -1.472 13.136 20.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.009 4.009 3 N -0.831 5.831 4 C 0.138 3.862 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.801 3.199 14 O -0.943 6.943 15 O -0.979 6.979 16 N -0.861 5.861 17 C -0.004 4.004 18 C -0.164 4.164 19 C -0.116 4.116 20 H 0.102 0.898 21 C -0.146 4.146 22 C -0.157 4.157 23 C -0.004 4.004 24 O -0.383 6.383 25 C -0.002 4.002 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.225 0.775 45 H 0.084 0.916 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.743 -1.011 13.378 19.934 hybrid contribution 0.033 -0.576 -0.819 1.002 sum -14.710 -1.587 12.558 19.406 Atomic orbital electron populations 1.22322 0.97372 1.01330 1.02085 1.21131 0.93038 0.83329 1.03438 1.57811 1.80826 1.21284 1.23225 1.18994 0.97266 0.90987 0.78949 1.21460 1.02103 1.27721 1.05513 0.92283 1.24916 0.97341 0.94827 0.96861 1.69906 1.36140 1.30239 1.17249 0.86587 0.84265 0.78404 0.78379 1.20190 1.21175 1.20003 1.01681 0.72658 0.72915 0.72669 1.93627 1.58805 1.57829 1.84085 1.93508 1.83193 1.57684 1.63564 1.59397 1.41734 1.22675 1.62317 1.21973 0.94343 0.82508 1.01538 1.22923 0.95651 0.99804 0.97993 1.22230 0.93621 0.96337 0.99367 0.89759 1.21508 0.92978 0.97749 1.02372 1.21521 0.92117 0.99060 1.02991 1.22238 0.88818 0.90618 0.98712 1.86479 1.19212 1.39133 1.93440 1.21740 0.88796 0.95876 0.93800 0.93198 0.91959 0.92296 0.89749 0.90715 0.94789 0.94694 0.92666 0.91680 0.90222 0.90352 0.90271 0.91178 0.91463 0.91258 0.90901 0.93593 0.93762 0.77500 0.91633 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 10.24 37.16 0.38 -2.02 16 2 C 0.12 2.05 6.40 -4.04 -0.03 2.03 16 3 N -0.99 -20.70 2.83 -115.66 -0.33 -21.02 16 4 C 0.26 6.49 5.10 -5.20 -0.03 6.46 16 5 C -0.53 -14.89 9.38 -34.44 -0.32 -15.21 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.09 13.29 55.43 0.74 -25.36 16 9 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 13 S 2.79 57.40 6.31 -107.50 -0.68 56.72 16 14 O -0.96 -23.62 16.69 -57.17 -0.95 -24.57 16 15 O -1.00 -21.31 16.27 -57.17 -0.93 -22.24 16 16 N -1.02 -16.13 3.75 -111.29 -0.42 -16.55 16 17 C 0.12 1.70 6.99 -2.41 -0.02 1.68 16 18 C -0.12 -1.30 5.95 -24.46 -0.15 -1.45 16 19 C -0.10 -0.91 2.92 -88.78 -0.26 -1.17 16 20 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 21 C -0.11 -0.83 4.57 -26.73 -0.12 -0.96 16 22 C -0.12 -0.93 5.48 -26.73 -0.15 -1.08 16 23 C 0.07 0.53 7.05 37.16 0.26 0.79 16 24 O -0.58 -4.73 13.66 -35.23 -0.48 -5.21 16 25 C 0.12 1.53 6.58 -3.06 -0.02 1.51 16 26 H 0.05 0.64 5.64 -51.93 -0.29 0.34 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 30 H 0.07 1.26 6.92 -51.92 -0.36 0.90 16 31 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 32 H 0.04 0.93 7.61 -51.93 -0.40 0.53 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 0.83 7.94 -51.93 -0.41 0.42 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.55 8.00 -51.93 -0.42 0.14 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.62 7.69 -51.93 -0.40 0.22 16 42 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.38 1.37 9.12 45.56 0.42 1.78 16 45 H 0.07 0.76 5.32 -51.93 -0.28 0.48 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 379.90 15.07 5.72 5.72 Total: -1.00 -34.85 379.90 -10.06 -44.92 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -7.17 Total: -1.60 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -0.54 Total: -7.73 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: -0.01 Total: -62.93 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -2.37 Total: -52.02 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 57.40 SS G_CDS: -0.68 Total: 56.72 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.85 -10.06 -44.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569002041.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.438 kcal (2) G-P(sol) polarization free energy of solvation -34.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds