Wall clock time and date at job start Tue Mar 31 2020 12:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47542 * 2 1 4 4 C 1.53000 * 109.47370 * 120.00159 * 2 1 3 5 5 C 1.53006 * 117.49565 * 8.61727 * 4 2 1 6 6 C 1.53000 * 60.00038 * 252.51430 * 5 4 2 7 7 N 1.46503 * 109.47123 * 239.99785 * 2 1 3 8 8 C 1.46493 * 120.00042 * 300.00145 * 7 2 1 9 9 C 1.34782 * 120.00034 * 120.00395 * 7 2 1 10 10 O 1.21387 * 119.99562 * 3.61218 * 9 7 2 11 11 C 1.49231 * 120.00157 * 183.61918 * 9 7 2 12 12 O 1.21750 * 120.00217 * 354.15968 * 11 9 7 13 13 N 1.33170 * 120.00024 * 174.43470 * 11 9 7 14 14 C 1.33383 * 119.99865 * 179.71969 * 13 11 9 15 15 C 1.40854 * 126.35645 * 0.03336 * 14 13 11 16 16 C 1.35298 * 108.22985 * 179.97438 * 15 14 13 17 17 N 1.36222 * 108.87917 * 359.97438 * 16 15 14 18 18 C 1.46494 * 125.86107 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47356 * 84.97584 * 18 17 16 20 20 H 1.07995 * 119.99752 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99895 * 180.02562 * 19 18 17 22 22 N 1.31509 * 120.00308 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99888 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47134 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47266 * 119.99793 * 23 21 19 26 26 H 1.48499 * 109.47032 * 239.99958 * 23 21 19 27 27 N 1.37285 * 126.35234 * 179.71487 * 14 13 11 28 28 H 0.97001 * 126.33640 * 359.97438 * 27 14 13 29 29 H 1.09002 * 109.47246 * 300.00188 * 1 2 3 30 30 H 1.09000 * 109.46805 * 60.00127 * 1 2 3 31 31 H 1.08997 * 109.47035 * 180.02562 * 1 2 3 32 32 H 1.08990 * 115.55725 * 154.32713 * 4 2 1 33 33 H 1.09004 * 117.49767 * 0.02562 * 5 4 2 34 34 H 1.08996 * 117.49818 * 145.01959 * 5 4 2 35 35 H 1.09005 * 117.49962 * 252.50827 * 6 5 4 36 36 H 1.08998 * 117.49931 * 107.49180 * 6 5 4 37 37 H 1.09006 * 109.47213 * 263.98589 * 8 7 2 38 38 H 1.08994 * 109.47689 * 23.98641 * 8 7 2 39 39 H 1.09002 * 109.47383 * 143.98711 * 8 7 2 40 40 H 1.07996 * 125.88340 * 359.96962 * 15 14 13 41 41 H 1.07994 * 125.56671 * 179.97438 * 16 15 14 42 42 H 1.09005 * 109.47143 * 204.97711 * 18 17 16 43 43 H 1.09003 * 109.47564 * 324.96880 * 18 17 16 44 44 H 0.97005 * 120.00351 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.0104 -1.4541 2.1117 6 6 1.6357 -0.1495 2.6096 7 7 2.0183 -0.6907 -1.1962 8 6 1.6644 -2.0932 -1.4280 9 6 2.7933 -0.0357 -2.0834 10 8 3.1407 1.1056 -1.8592 11 6 3.2240 -0.7135 -3.3411 12 8 2.9659 -1.8902 -3.5177 13 7 3.8954 -0.0328 -4.2681 14 6 4.2853 -0.6401 -5.3898 15 6 4.0597 -1.9879 -5.7314 16 6 4.6093 -2.2141 -6.9468 17 7 5.1776 -1.0602 -7.3953 18 6 5.8754 -0.8869 -8.6717 19 6 4.8727 -0.5860 -9.7557 20 1 3.8208 -0.5300 -9.5177 21 6 5.2983 -0.3834 -11.0514 22 7 6.5792 -0.4521 -11.3412 23 14 4.0554 -0.0097 -12.3949 24 1 2.6892 0.0128 -11.8132 25 1 4.3596 1.3135 -12.9965 26 1 4.1293 -1.0589 -13.4433 27 7 4.9755 -0.0660 -6.4284 28 1 5.2698 0.8567 -6.4825 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.0323 -1.1641 1.1643 33 1 -0.0303 -1.4227 1.7889 34 1 1.3252 -2.3794 2.5941 35 1 2.3620 -0.2165 3.4197 36 1 1.0065 0.7405 2.6146 37 1 2.4676 -2.7352 -1.0661 38 1 0.7432 -2.3284 -0.8950 39 1 1.5192 -2.2597 -2.4954 40 1 3.5380 -2.7152 -5.1271 41 1 4.5991 -3.1559 -7.4753 42 1 6.5816 -0.0605 -8.5904 43 1 6.4140 -1.8019 -8.9186 44 1 6.8786 -0.3092 -12.2527 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573314752.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:18 Heat of formation + Delta-G solvation = 78.162808 kcal Electronic energy + Delta-G solvation = -26251.663035 eV Core-core repulsion = 22401.854976 eV Total energy + Delta-G solvation = -3849.808059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.08281 -40.18314 -38.50890 -37.41651 -35.13103 -34.29728 -33.04981 -31.26310 -30.81507 -30.47614 -27.19782 -26.79379 -25.54454 -23.95973 -22.85447 -22.58207 -21.51407 -21.25478 -19.48117 -18.67925 -17.29906 -16.98781 -16.74891 -16.47045 -15.96250 -15.64173 -15.30624 -15.06243 -14.90760 -14.47631 -14.25132 -13.92972 -13.41093 -13.23605 -13.09231 -12.98515 -12.66546 -12.53428 -12.26231 -12.22130 -11.99924 -11.87129 -11.58531 -11.43216 -11.16030 -11.13955 -10.74517 -10.63182 -10.57512 -10.50073 -10.11619 -9.69328 -9.19680 -9.08320 -8.99523 -8.58833 -8.23950 -7.16756 -6.59107 -4.74139 1.26392 1.85299 2.35899 2.91559 3.00402 3.10349 3.14605 3.18035 3.63742 3.98993 4.13730 4.41368 4.51526 4.58283 4.73174 4.74956 4.78644 4.93845 5.08874 5.12436 5.21169 5.40420 5.43077 5.58903 5.62586 5.64465 5.77271 5.81680 5.85306 5.88603 5.96412 6.07194 6.10601 6.21416 6.36859 6.43491 6.56040 6.68919 7.23496 7.30849 7.37580 7.41488 7.44158 7.74636 7.99763 8.31842 8.35283 8.97235 9.11303 10.44951 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033629 B = 0.002172 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.413670 B =12886.564784 C =12964.126265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.164 3.836 3 H 0.104 0.896 4 C -0.160 4.160 5 C -0.183 4.183 6 C -0.174 4.174 7 N -0.595 5.595 8 C 0.072 3.928 9 C 0.525 3.475 10 O -0.513 6.513 11 C 0.488 3.512 12 O -0.568 6.568 13 N -0.664 5.664 14 C 0.464 3.536 15 C -0.329 4.329 16 C 0.166 3.834 17 N -0.329 5.329 18 C 0.250 3.750 19 C -0.561 4.561 20 H 0.071 0.929 21 C 0.071 3.929 22 N -0.885 5.885 23 Si 0.911 3.089 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.278 1.278 27 N -0.457 5.457 28 H 0.449 0.551 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.109 0.891 40 H 0.187 0.813 41 H 0.192 0.808 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.631 -4.219 17.075 19.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.060 3.940 3 H 0.122 0.878 4 C -0.179 4.179 5 C -0.220 4.220 6 C -0.212 4.212 7 N -0.330 5.330 8 C -0.070 4.070 9 C 0.308 3.692 10 O -0.387 6.387 11 C 0.269 3.731 12 O -0.451 6.451 13 N -0.429 5.429 14 C 0.216 3.784 15 C -0.361 4.361 16 C 0.018 3.982 17 N -0.113 5.113 18 C 0.134 3.866 19 C -0.599 4.599 20 H 0.089 0.911 21 C -0.135 4.135 22 N -0.521 5.521 23 Si 0.737 3.263 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.203 1.203 27 N -0.179 5.179 28 H 0.297 0.703 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.204 0.796 41 H 0.209 0.791 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.053 -3.195 16.797 18.496 hybrid contribution -0.481 -0.038 -0.889 1.012 sum -7.535 -3.233 15.908 17.896 Atomic orbital electron populations 1.22254 0.94981 1.02497 1.02408 1.20539 0.93619 0.97430 0.82377 0.87802 1.22662 0.99926 1.03988 0.91364 1.23154 0.98973 0.95991 1.03879 1.22942 1.03782 0.97609 0.96822 1.47769 1.50341 1.13339 1.21569 1.22284 0.99397 0.79927 1.05366 1.20115 0.78618 0.86125 0.84298 1.90666 1.53743 1.17779 1.76502 1.20179 0.80777 0.85290 0.86890 1.90496 1.56046 1.18697 1.79820 1.68700 1.32529 1.38001 1.03702 1.19136 0.84514 0.88641 0.86068 1.22511 1.16078 0.98003 0.99502 1.22993 0.90461 0.90195 0.94540 1.48195 1.48266 1.01743 1.13138 1.20198 0.92349 1.00855 0.73183 1.21411 0.94009 1.52212 0.92236 0.91053 1.24959 0.95886 0.93925 0.98712 1.69898 1.13891 1.47147 1.21176 0.86217 0.80926 0.78352 0.80792 1.19348 1.20443 1.20343 1.44669 1.52797 1.08869 1.11522 0.70349 0.91428 0.91994 0.91674 0.87585 0.88060 0.89037 0.88802 0.88629 0.93069 0.92537 0.87288 0.79630 0.79067 0.92758 0.91002 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 7.78 37.16 0.29 -1.25 16 2 C 0.16 1.96 3.03 -67.93 -0.21 1.75 16 3 H 0.10 1.43 6.90 -51.93 -0.36 1.08 16 4 C -0.16 -1.62 5.49 -90.61 -0.50 -2.12 16 5 C -0.18 -1.44 9.57 -26.73 -0.26 -1.69 16 6 C -0.17 -1.40 9.90 -26.73 -0.26 -1.67 16 7 N -0.59 -8.62 2.76 -174.53 -0.48 -9.10 16 8 C 0.07 0.91 8.88 59.84 0.53 1.44 16 9 C 0.52 9.70 7.73 -11.69 -0.09 9.61 16 10 O -0.51 -10.74 16.24 5.46 0.09 -10.65 16 11 C 0.49 9.60 7.66 -12.40 -0.09 9.51 16 12 O -0.57 -10.68 10.05 5.14 0.05 -10.63 16 13 N -0.66 -13.68 10.33 -11.99 -0.12 -13.80 16 14 C 0.46 8.77 8.07 -155.17 -1.25 7.52 16 15 C -0.33 -5.61 9.52 -39.64 -0.38 -5.99 16 16 C 0.17 2.55 11.46 -16.65 -0.19 2.36 16 17 N -0.33 -5.76 3.63 -62.22 -0.23 -5.99 16 18 C 0.25 4.96 6.19 -5.20 -0.03 4.93 16 19 C -0.56 -12.86 9.39 -34.44 -0.32 -13.18 16 20 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 21 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.88 -21.91 13.29 55.43 0.74 -21.17 16 23 Si 0.91 18.83 29.54 -169.99 -5.02 13.81 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 27 N -0.46 -7.94 7.37 31.31 0.23 -7.71 16 28 H 0.45 6.99 8.96 -182.55 -1.64 5.35 16 29 H 0.07 0.52 7.07 -51.93 -0.37 0.15 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.55 5.50 -51.93 -0.29 0.27 16 32 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.10 0.72 5.85 -51.93 -0.30 0.42 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.71 7.61 -51.93 -0.40 0.31 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.56 6.44 -51.93 -0.33 0.23 16 39 H 0.11 1.57 5.35 -51.94 -0.28 1.29 16 40 H 0.19 3.18 5.77 -52.49 -0.30 2.88 16 41 H 0.19 2.22 8.06 -52.49 -0.42 1.80 16 42 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 LS Contribution 365.27 15.07 5.50 5.50 Total: -1.00 -29.00 365.27 -9.29 -38.29 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -7.19 Total: 8.65 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: -2.86 Total: 12.80 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.14 Total: -57.77 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: 0.14 Total: -21.28 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.00 -9.29 -38.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573314752.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.457 kcal (2) G-P(sol) polarization free energy of solvation -29.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds