Wall clock time and date at job start Tue Mar 31 2020 13:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47277 * 2 1 4 4 C 1.46506 * 119.99936 * 84.99719 * 3 2 1 5 5 C 1.50701 * 109.46970 * 85.00357 * 4 3 2 6 6 H 1.08005 * 119.99694 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00052 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00110 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00229 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47250 * 89.99260 * 9 7 5 11 11 H 1.48497 * 109.47067 * 209.99831 * 9 7 5 12 12 H 1.48502 * 109.46618 * 329.99589 * 9 7 5 13 13 S 1.65597 * 119.99926 * 265.27680 * 3 2 1 14 14 O 1.42095 * 106.40469 * 23.26116 * 13 3 2 15 15 O 1.42098 * 106.40441 * 156.18457 * 13 3 2 16 16 N 1.65602 * 107.21619 * 269.72326 * 13 3 2 17 17 C 1.46933 * 120.63071 * 269.71927 * 16 13 3 18 18 C 1.53618 * 108.54036 * 126.36787 * 17 16 13 19 19 H 1.08999 * 109.64043 * 294.86343 * 18 17 16 20 20 C 1.53001 * 109.45644 * 174.73996 * 18 17 16 21 21 C 1.53043 * 109.24364 * 54.85926 * 18 17 16 22 22 C 1.53037 * 109.53658 * 298.50695 * 21 18 17 23 23 H 1.09001 * 109.52698 * 301.40044 * 22 21 18 24 24 C 1.53002 * 109.50068 * 181.31374 * 22 21 18 25 25 O 1.42903 * 109.47372 * 175.16218 * 24 22 21 26 26 C 1.46923 * 120.63132 * 89.99966 * 16 13 3 27 27 H 1.09005 * 109.47307 * 300.00055 * 1 2 3 28 28 H 1.08995 * 109.46954 * 59.99844 * 1 2 3 29 29 H 1.08996 * 109.47521 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46933 * 239.99603 * 2 1 3 31 31 H 1.09000 * 109.46920 * 119.99673 * 2 1 3 32 32 H 1.08999 * 109.46864 * 204.99706 * 4 3 2 33 33 H 1.08999 * 109.46950 * 325.00088 * 4 3 2 34 34 H 0.97000 * 119.99969 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.58276 * 246.20466 * 17 16 13 36 36 H 1.08998 * 109.58196 * 6.62628 * 17 16 13 37 37 H 1.09000 * 109.47126 * 300.27119 * 20 18 17 38 38 H 1.09002 * 109.46968 * 60.27314 * 20 18 17 39 39 H 1.09003 * 109.47322 * 180.27390 * 20 18 17 40 40 H 1.08996 * 109.45971 * 178.48688 * 21 18 17 41 41 H 1.08997 * 109.44957 * 58.52068 * 21 18 17 42 42 H 1.08993 * 109.47008 * 295.16690 * 24 22 21 43 43 H 1.09008 * 109.46815 * 55.16284 * 24 22 21 44 44 H 0.96692 * 113.99649 * 180.02562 * 25 24 22 45 45 H 1.09000 * 109.58670 * 353.37370 * 26 16 13 46 46 H 1.09005 * 109.58806 * 113.65432 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2640 5 6 3.4948 1.7888 1.8824 6 1 4.1721 1.1111 1.3839 7 6 3.8525 2.3605 3.0849 8 7 3.0276 3.1854 3.6920 9 14 5.5095 1.9646 3.8511 10 1 6.5225 2.9383 3.3705 11 1 5.4039 2.0494 5.3299 12 1 5.9193 0.5913 3.4620 13 16 2.4057 2.1224 -1.4293 14 8 1.6809 1.4412 -2.4440 15 8 2.2940 3.5203 -1.1995 16 7 4.0085 1.8227 -1.7182 17 6 5.0430 2.7420 -1.2247 18 6 6.0642 1.9354 -0.4084 19 1 5.5836 1.5303 0.4821 20 6 7.2204 2.8479 0.0058 21 6 6.6016 0.7874 -1.2659 22 6 5.4509 -0.1445 -1.6527 23 1 4.9758 -0.5305 -0.7508 24 6 5.9941 -1.3096 -2.4824 25 8 4.9402 -2.2375 -2.7479 26 6 4.4229 0.6355 -2.4783 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0923 3.1802 1.0756 33 1 1.3617 1.8097 1.9453 34 1 3.2794 3.5880 4.5379 35 1 5.5407 3.2192 -2.0689 36 1 4.5846 3.5015 -0.5912 37 1 7.7001 3.2536 -0.8849 38 1 6.8372 3.6654 0.6165 39 1 7.9476 2.2747 0.5809 40 1 7.3465 0.2287 -0.6992 41 1 7.0601 1.1921 -2.1681 42 1 6.3907 -0.9310 -3.4244 43 1 6.7885 -1.8105 -1.9290 44 1 5.2133 -3.0037 -3.2707 45 1 3.5555 0.0047 -2.6723 46 1 4.8689 0.9443 -3.4238 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576767636.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:28 Heat of formation + Delta-G solvation = -141.852132 kcal Electronic energy + Delta-G solvation = -28365.040021 eV Core-core repulsion = 24608.842598 eV Total energy + Delta-G solvation = -3756.197423 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -38.91239 -36.72112 -36.49642 -35.93876 -35.14468 -33.09094 -32.69977 -32.21766 -29.87422 -26.63355 -26.48534 -25.68534 -24.07625 -23.10953 -21.63947 -20.62764 -19.82118 -18.26063 -17.35229 -17.05587 -16.80951 -16.26883 -15.95231 -15.26713 -14.83978 -14.51945 -14.17763 -13.84896 -13.73591 -13.57164 -13.40452 -13.07477 -12.86113 -12.48108 -12.27217 -12.03050 -11.93768 -11.86878 -11.63670 -11.45688 -11.41536 -11.26497 -11.16065 -11.01700 -10.94712 -10.83045 -10.71278 -10.45993 -10.33136 -10.24334 -10.16415 -10.03401 -9.88475 -9.51041 -8.58598 -8.45756 -7.96141 -6.09863 -4.15468 1.33737 3.22845 3.30864 3.31160 3.53077 4.14155 4.19639 4.35845 4.80715 4.91803 5.00940 5.13011 5.24238 5.24423 5.31302 5.45354 5.50801 5.54814 5.59646 5.71579 5.77058 5.83742 5.88355 5.91192 5.99233 6.02893 6.08628 6.15692 6.19225 6.36831 6.40789 6.42322 6.43740 6.68296 6.73361 6.74438 6.83133 7.02846 7.41206 7.51175 7.57075 7.72421 7.89181 8.19524 8.89644 9.49520 10.98257 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010154 B = 0.007810 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.743159 B = 3584.418725 C = 4773.220312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.131 3.869 3 N -0.991 5.991 4 C 0.245 3.755 5 C -0.534 4.534 6 H 0.068 0.932 7 C 0.066 3.934 8 N -0.889 5.889 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.273 1.273 13 S 2.784 3.216 14 O -0.998 6.998 15 O -0.980 6.980 16 N -1.004 6.004 17 C 0.136 3.864 18 C -0.117 4.117 19 H 0.104 0.896 20 C -0.143 4.143 21 C -0.100 4.100 22 C -0.104 4.104 23 H 0.088 0.912 24 C 0.083 3.917 25 O -0.570 6.570 26 C 0.137 3.863 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.037 0.963 34 H 0.263 0.737 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.044 0.956 43 H 0.046 0.954 44 H 0.376 0.624 45 H 0.090 0.910 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.015 -7.640 -10.561 14.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.832 5.832 4 C 0.123 3.877 5 C -0.574 4.574 6 H 0.086 0.914 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.711 3.289 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.198 1.198 13 S 2.793 3.207 14 O -0.982 6.982 15 O -0.964 6.964 16 N -0.842 5.842 17 C 0.011 3.989 18 C -0.137 4.137 19 H 0.122 0.878 20 C -0.201 4.201 21 C -0.138 4.138 22 C -0.124 4.124 23 H 0.106 0.894 24 C 0.005 3.995 25 O -0.375 6.375 26 C 0.011 3.989 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.222 0.778 45 H 0.108 0.892 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.036 -6.544 -10.601 13.843 hybrid contribution 1.657 -0.858 0.612 1.964 sum 7.693 -7.401 -9.988 14.620 Atomic orbital electron populations 1.22205 0.97069 1.01322 1.02273 1.20957 0.93508 0.82937 1.02122 1.57756 1.78548 1.22806 1.24127 1.19179 0.97299 0.92150 0.79090 1.21615 1.02131 1.27822 1.05797 0.91438 1.24912 0.96922 0.94952 0.96877 1.69932 1.35816 1.29933 1.17089 0.86737 0.84602 0.78942 0.78644 1.20115 1.21351 1.19780 1.01815 0.72604 0.73349 0.72897 1.93526 1.70526 1.76326 1.57821 1.93561 1.85754 1.31023 1.86036 1.58219 1.25015 1.33277 1.67644 1.21434 0.89079 0.91278 0.97136 1.21770 0.96127 0.95592 1.00164 0.87767 1.21748 0.97683 0.99909 1.00802 1.21486 0.96421 0.96295 0.99617 1.21551 0.97275 0.93924 0.99685 0.89355 1.22209 0.89210 0.90036 0.98066 1.86538 1.37585 1.36697 1.76682 1.21244 0.98875 0.85655 0.93165 0.92155 0.92728 0.92402 0.91886 0.90356 0.93323 0.94515 0.92678 0.92414 0.88527 0.93171 0.91928 0.92969 0.92049 0.92204 0.93739 0.93612 0.77806 0.89196 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 10.24 37.16 0.38 -2.43 16 2 C 0.13 2.39 6.06 -4.04 -0.02 2.36 16 3 N -0.99 -20.79 2.83 -115.66 -0.33 -21.11 16 4 C 0.25 6.01 5.44 -5.19 -0.03 5.98 16 5 C -0.53 -13.40 8.98 -34.44 -0.31 -13.71 16 6 H 0.07 1.62 5.55 -52.48 -0.29 1.33 16 7 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -24.97 13.29 55.43 0.74 -24.24 16 9 Si 0.88 20.05 29.54 -169.99 -5.02 15.03 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 S 2.78 57.74 6.07 -107.50 -0.65 57.09 16 14 O -1.00 -21.26 15.82 -57.17 -0.90 -22.17 16 15 O -0.98 -23.30 15.39 -57.17 -0.88 -24.18 16 16 N -1.00 -17.63 3.34 -113.27 -0.38 -18.00 16 17 C 0.14 2.29 5.69 -3.49 -0.02 2.27 16 18 C -0.12 -1.84 2.88 -90.28 -0.26 -2.10 16 19 H 0.10 1.96 5.34 -51.93 -0.28 1.68 16 20 C -0.14 -2.03 9.20 37.16 0.34 -1.69 16 21 C -0.10 -1.28 4.45 -26.69 -0.12 -1.40 16 22 C -0.10 -1.41 2.58 -90.50 -0.23 -1.64 16 23 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 24 C 0.08 0.88 6.43 37.16 0.24 1.12 16 25 O -0.57 -6.37 13.31 -35.23 -0.47 -6.84 16 26 C 0.14 2.05 5.49 -3.71 -0.02 2.03 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.07 7.61 -51.93 -0.40 0.67 16 31 H 0.08 1.42 8.11 -51.93 -0.42 0.99 16 32 H 0.05 1.32 6.91 -51.93 -0.36 0.97 16 33 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.10 1.87 7.12 -51.93 -0.37 1.50 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 44 H 0.38 2.34 9.12 45.56 0.42 2.76 16 45 H 0.09 1.44 6.97 -51.93 -0.36 1.08 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 372.78 15.07 5.62 5.62 Total: -1.00 -31.40 372.78 -9.54 -40.94 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -7.11 Total: 5.43 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -0.15 Total: -7.57 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: 0.03 Total: -63.35 kcal Atomic # 8 Polarization: -50.93 SS G_CDS: -2.25 Total: -53.18 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 57.74 SS G_CDS: -0.65 Total: 57.09 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.40 -9.54 -40.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576767636.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.912 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds