Wall clock time and date at job start Tue Mar 31 2020 13:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47160 * 2 1 4 4 C 1.46493 * 120.00108 * 85.00348 * 3 2 1 5 5 C 1.50706 * 109.47128 * 274.99903 * 4 3 2 6 6 H 1.08005 * 119.99758 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00102 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00217 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47483 * 269.99808 * 9 7 5 11 11 H 1.48499 * 109.47134 * 30.00322 * 9 7 5 12 12 H 1.48507 * 109.46904 * 150.00145 * 9 7 5 13 13 S 1.65601 * 119.99800 * 264.99849 * 3 2 1 14 14 O 1.42102 * 106.40315 * 23.54410 * 13 3 2 15 15 O 1.42106 * 106.39789 * 156.46091 * 13 3 2 16 16 N 1.65595 * 107.22339 * 269.99884 * 13 3 2 17 17 C 1.46926 * 120.63002 * 89.99987 * 16 13 3 18 18 C 1.53184 * 108.77497 * 126.37198 * 17 16 13 19 19 H 1.09002 * 109.50120 * 294.68287 * 18 17 16 20 20 C 1.53002 * 109.49950 * 174.58815 * 18 17 16 21 21 O 1.42901 * 109.47089 * 65.00056 * 20 18 17 22 22 C 1.53041 * 109.31498 * 54.63668 * 18 17 16 23 23 C 1.53042 * 109.53557 * 298.63541 * 22 18 17 24 24 H 1.08992 * 109.49952 * 301.40903 * 23 22 18 25 25 C 1.53001 * 109.49419 * 181.34593 * 23 22 18 26 26 C 1.46925 * 120.63380 * 269.72644 * 16 13 3 27 27 H 1.09004 * 109.47194 * 59.99737 * 1 2 3 28 28 H 1.08997 * 109.47473 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46962 * 299.99665 * 1 2 3 30 30 H 1.09009 * 109.47329 * 240.00207 * 2 1 3 31 31 H 1.08997 * 109.47464 * 119.99999 * 2 1 3 32 32 H 1.09001 * 109.47786 * 155.00176 * 4 3 2 33 33 H 1.09006 * 109.47401 * 34.99761 * 4 3 2 34 34 H 0.97001 * 119.99646 * 359.97438 * 8 7 5 35 35 H 1.09001 * 109.58754 * 246.15739 * 17 16 13 36 36 H 1.08994 * 109.58633 * 6.58373 * 17 16 13 37 37 H 1.09000 * 109.47128 * 185.00094 * 20 18 17 38 38 H 1.09001 * 109.46918 * 305.00271 * 20 18 17 39 39 H 0.96696 * 113.99830 * 180.02562 * 21 20 18 40 40 H 1.09003 * 109.45866 * 58.65336 * 22 18 17 41 41 H 1.09002 * 109.46295 * 178.62563 * 22 18 17 42 42 H 1.08997 * 109.47247 * 60.00264 * 25 23 22 43 43 H 1.09004 * 109.47185 * 179.97438 * 25 23 22 44 44 H 1.08999 * 109.47680 * 299.99944 * 25 23 22 45 45 H 1.09001 * 109.58710 * 353.41749 * 26 16 13 46 46 H 1.09001 * 109.59336 * 113.83855 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 1.2638 5 6 0.8360 2.7288 1.6356 6 1 -0.0226 2.5949 0.9943 7 6 0.7224 3.4672 2.7944 8 7 1.7681 3.6308 3.5751 9 14 -0.9164 4.2365 3.2548 10 1 -1.0045 5.5996 2.6721 11 1 -2.0225 3.3992 2.7250 12 1 -1.0249 4.3223 4.7334 13 16 2.4121 2.1201 -1.4287 14 8 1.6867 1.4415 -2.4448 15 8 2.3056 3.5186 -1.1998 16 7 4.0143 1.8137 -1.7138 17 6 4.4256 0.6245 -2.4724 18 6 5.3287 1.0652 -3.6286 19 1 4.7535 1.6705 -4.3293 20 6 5.8756 -0.1691 -4.3485 21 8 4.7978 -0.8799 -4.9609 22 6 6.4922 1.8914 -3.0755 23 6 5.9477 3.1432 -2.3837 24 1 5.3667 3.7289 -3.0960 25 6 7.1131 3.9852 -1.8606 26 6 5.0513 2.7290 -1.2182 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.9080 2.8918 1.1513 33 1 2.4690 1.4182 2.0480 34 1 2.6191 3.2316 3.3358 35 1 4.9737 -0.0542 -1.8189 36 1 3.5439 0.1211 -2.8688 37 1 6.5869 0.1420 -5.1136 38 1 6.3761 -0.8172 -3.6291 39 1 5.0716 -1.6763 -5.4361 40 1 7.0524 1.2937 -2.3564 41 1 7.1498 2.1857 -3.8936 42 1 7.7515 4.2794 -2.6936 43 1 6.7249 4.8770 -1.3683 44 1 7.6932 3.3996 -1.1474 45 1 4.5824 3.6136 -0.7873 46 1 5.6515 2.2254 -0.4604 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576767637.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:31 Heat of formation + Delta-G solvation = -143.799150 kcal Electronic energy + Delta-G solvation = -27426.440032 eV Core-core repulsion = 23670.158180 eV Total energy + Delta-G solvation = -3756.281852 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.22448 -36.86094 -36.61974 -36.14305 -35.15497 -33.43091 -32.79781 -32.51973 -29.74197 -26.88206 -26.26164 -25.94974 -24.35156 -22.75562 -21.93370 -20.94116 -20.22653 -18.47935 -17.54659 -17.43059 -16.84542 -16.71285 -16.05054 -15.32913 -14.93734 -14.48130 -14.21484 -13.99660 -13.81353 -13.68506 -13.54684 -13.28207 -13.07850 -12.76773 -12.57566 -12.23240 -12.13525 -11.90196 -11.68573 -11.63172 -11.60159 -11.35152 -11.26814 -11.08197 -10.96341 -10.89193 -10.77585 -10.57180 -10.49601 -10.38527 -10.20184 -10.15387 -10.03148 -9.27580 -8.84994 -8.35233 -7.92881 -6.36254 -4.07371 1.15494 3.44077 3.47599 3.50721 3.65636 3.92870 4.05968 4.55342 4.56828 4.61803 4.75272 4.82289 5.02209 5.05448 5.21324 5.24107 5.29547 5.33943 5.41767 5.43141 5.49909 5.54553 5.63019 5.71211 5.74961 5.82613 5.89609 5.93493 6.02464 6.03825 6.07274 6.12779 6.31595 6.32944 6.39882 6.62124 6.77088 6.90898 7.00043 7.23986 7.42262 7.52993 8.04584 8.48598 8.82841 9.60908 11.01231 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017373 B = 0.004577 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.277494 B = 6116.627530 C = 7130.764369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.136 3.864 3 N -0.989 5.989 4 C 0.249 3.751 5 C -0.602 4.602 6 H 0.057 0.943 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 1.070 2.930 10 H -0.286 1.286 11 H -0.288 1.288 12 H -0.284 1.284 13 S 2.778 3.222 14 O -0.989 6.989 15 O -0.963 6.963 16 N -1.013 6.013 17 C 0.130 3.870 18 C -0.102 4.102 19 H 0.082 0.918 20 C 0.083 3.917 21 O -0.569 6.569 22 C -0.103 4.103 23 C -0.104 4.104 24 H 0.075 0.925 25 C -0.145 4.145 26 C 0.122 3.878 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.024 0.976 33 H 0.023 0.977 34 H 0.266 0.734 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.378 0.622 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.095 0.905 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.368 -8.448 -13.084 19.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.010 3.990 3 N -0.831 5.831 4 C 0.127 3.873 5 C -0.642 4.642 6 H 0.075 0.925 7 C -0.183 4.183 8 N -0.548 5.548 9 Si 0.898 3.102 10 H -0.213 1.213 11 H -0.214 1.214 12 H -0.210 1.210 13 S 2.787 3.213 14 O -0.973 6.973 15 O -0.947 6.947 16 N -0.850 5.850 17 C 0.004 3.996 18 C -0.122 4.122 19 H 0.101 0.899 20 C 0.005 3.995 21 O -0.374 6.374 22 C -0.141 4.141 23 C -0.124 4.124 24 H 0.094 0.906 25 C -0.203 4.203 26 C -0.003 4.003 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.224 0.776 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.113 0.887 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.663 -6.530 -12.184 17.458 hybrid contribution 1.428 -1.613 -1.169 2.451 sum 12.091 -8.143 -13.353 19.769 Atomic orbital electron populations 1.22249 0.96203 1.00861 1.03751 1.20944 0.95003 0.82142 1.00929 1.57700 1.78372 1.23004 1.23988 1.19082 0.97900 0.90513 0.79855 1.22355 0.96395 1.35457 1.09955 0.92452 1.25766 1.04320 0.95187 0.93069 1.70794 1.01491 1.43551 1.38977 0.83536 0.74188 0.76383 0.76101 1.21285 1.21407 1.21005 1.02116 0.72535 0.73644 0.72965 1.93537 1.70019 1.76359 1.57416 1.93608 1.85142 1.30268 1.85657 1.58475 1.25248 1.33550 1.67740 1.21330 1.00038 0.86503 0.91738 1.21500 0.97495 0.95850 0.97360 0.89911 1.22178 0.88770 0.93082 0.95506 1.86562 1.35065 1.42801 1.73000 1.21520 0.96539 0.96121 0.99921 1.21367 0.96823 0.96249 0.97938 0.90617 1.21769 0.97462 0.99966 1.01103 1.21387 0.89960 0.93460 0.95512 0.92811 0.93027 0.90231 0.92169 0.91318 0.95812 0.95917 0.92367 0.92033 0.88545 0.93488 0.93463 0.77591 0.91522 0.91648 0.92483 0.91978 0.92426 0.88674 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 9.83 37.15 0.37 -2.84 16 2 C 0.14 2.49 6.09 -4.04 -0.02 2.47 16 3 N -0.99 -21.15 2.86 -115.66 -0.33 -21.48 16 4 C 0.25 6.21 4.43 -5.19 -0.02 6.19 16 5 C -0.60 -16.97 8.41 -34.44 -0.29 -17.26 16 6 H 0.06 1.64 6.89 -52.48 -0.36 1.28 16 7 C 0.02 0.59 5.46 -17.82 -0.10 0.50 16 8 N -0.91 -27.24 13.65 55.43 0.76 -26.48 16 9 Si 1.07 25.80 29.90 -169.99 -5.08 20.71 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 S 2.78 58.22 6.05 -107.50 -0.65 57.57 16 14 O -0.99 -21.79 15.70 -57.17 -0.90 -22.68 16 15 O -0.96 -23.77 15.69 -57.17 -0.90 -24.66 16 16 N -1.01 -16.42 3.35 -113.77 -0.38 -16.80 16 17 C 0.13 1.77 5.60 -3.71 -0.02 1.75 16 18 C -0.10 -1.16 2.58 -90.50 -0.23 -1.39 16 19 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 20 C 0.08 0.73 6.43 37.16 0.24 0.97 16 21 O -0.57 -5.75 13.31 -35.23 -0.47 -6.22 16 22 C -0.10 -1.00 4.45 -26.69 -0.12 -1.12 16 23 C -0.10 -1.20 2.86 -90.72 -0.26 -1.46 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 25 C -0.14 -1.39 9.20 37.16 0.34 -1.05 16 26 C 0.12 1.78 5.73 -3.94 -0.02 1.76 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 1.66 6.59 -51.93 -0.34 1.32 16 30 H 0.06 0.97 7.61 -51.92 -0.40 0.57 16 31 H 0.07 1.16 8.00 -51.93 -0.42 0.74 16 32 H 0.02 0.62 7.48 -51.93 -0.39 0.23 16 33 H 0.02 0.57 7.87 -51.93 -0.41 0.16 16 34 H 0.27 7.79 7.22 -40.82 -0.29 7.50 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.10 1.47 6.76 -51.93 -0.35 1.12 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.38 1.93 9.12 45.56 0.42 2.34 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 1.59 6.91 -51.93 -0.36 1.23 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 373.19 15.07 5.62 5.62 Total: -1.00 -35.31 373.19 -9.66 -44.97 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -7.19 Total: 0.94 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -0.14 Total: -11.49 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: 0.04 Total: -64.76 kcal Atomic # 8 Polarization: -51.30 SS G_CDS: -2.26 Total: -53.57 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.71 kcal Atomic # 16 Polarization: 58.22 SS G_CDS: -0.65 Total: 57.57 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.31 -9.66 -44.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576767637.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.828 kcal (2) G-P(sol) polarization free energy of solvation -35.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds