Wall clock time and date at job start Tue Mar 31 2020 13:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47338 * 2 1 4 4 C 1.46499 * 120.00471 * 84.99755 * 3 2 1 5 5 C 1.50701 * 109.47260 * 275.00665 * 4 3 2 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99694 * 180.27562 * 5 4 3 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 S 1.65603 * 119.99916 * 265.00339 * 3 2 1 14 14 O 1.42100 * 106.40487 * 23.53428 * 13 3 2 15 15 O 1.42102 * 106.40550 * 156.46009 * 13 3 2 16 16 N 1.65605 * 107.21743 * 269.99767 * 13 3 2 17 17 C 1.46917 * 120.63198 * 269.72019 * 16 13 3 18 18 C 1.53624 * 108.54519 * 126.36448 * 17 16 13 19 19 H 1.09002 * 109.45760 * 174.74038 * 18 17 16 20 20 C 1.52998 * 109.63668 * 294.86582 * 18 17 16 21 21 C 1.53041 * 109.23890 * 54.85783 * 18 17 16 22 22 C 1.53042 * 109.53841 * 298.51031 * 21 18 17 23 23 H 1.08996 * 109.49910 * 301.41177 * 22 21 18 24 24 C 1.52999 * 109.52253 * 181.33270 * 22 21 18 25 25 O 1.42901 * 109.47018 * 175.14791 * 24 22 21 26 26 C 1.46923 * 120.62833 * 89.99998 * 16 13 3 27 27 H 1.09006 * 109.47273 * 59.99883 * 1 2 3 28 28 H 1.08998 * 109.47543 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47166 * 300.00390 * 1 2 3 30 30 H 1.09005 * 109.46668 * 239.99714 * 2 1 3 31 31 H 1.08999 * 109.46953 * 120.00338 * 2 1 3 32 32 H 1.09000 * 109.47197 * 154.99670 * 4 3 2 33 33 H 1.09007 * 109.46342 * 35.00243 * 4 3 2 34 34 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.59132 * 246.20019 * 17 16 13 36 36 H 1.09005 * 109.58906 * 6.62644 * 17 16 13 37 37 H 1.09003 * 109.47089 * 179.83053 * 20 18 17 38 38 H 1.09000 * 109.47301 * 299.83746 * 20 18 17 39 39 H 1.09007 * 109.47033 * 59.83317 * 20 18 17 40 40 H 1.09007 * 109.46222 * 178.48932 * 21 18 17 41 41 H 1.09005 * 109.45826 * 58.53542 * 21 18 17 42 42 H 1.09003 * 109.47141 * 295.14620 * 24 22 21 43 43 H 1.08999 * 109.47368 * 55.14511 * 24 22 21 44 44 H 0.96699 * 113.99988 * 180.02562 * 25 24 22 45 45 H 1.08997 * 109.58872 * 353.37097 * 26 16 13 46 46 H 1.08996 * 109.59185 * 113.65813 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 1.2638 5 6 0.8360 2.7289 1.6356 6 1 -0.0226 2.5948 0.9943 7 6 0.7241 3.4725 2.7911 8 7 1.7697 3.6360 3.5719 9 14 -0.9130 4.2477 3.2479 10 1 -1.9236 3.9171 2.2114 11 1 -1.3606 3.7208 4.5622 12 1 -0.7560 5.7219 3.3332 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4414 -2.4449 15 8 2.3057 3.5186 -1.1999 16 7 4.0144 1.8136 -1.7138 17 6 5.0514 2.7288 -1.2183 18 6 6.0674 1.9185 -0.3991 19 1 6.8931 2.5653 -0.1025 20 6 5.3874 1.3532 0.8494 21 6 6.6020 0.7677 -1.2549 22 6 5.4483 -0.1595 -1.6440 23 1 4.9697 -0.5427 -0.7428 24 6 5.9881 -1.3277 -2.4715 25 8 4.9307 -2.2511 -2.7384 26 6 4.4256 0.6244 -2.4724 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.9081 2.8918 1.1512 33 1 2.4690 1.4182 2.0480 34 1 1.6909 4.1595 4.3846 35 1 5.5532 3.2035 -2.0615 36 1 4.5948 3.4905 -0.5862 37 1 6.1098 0.7764 1.4270 38 1 5.0068 2.1731 1.4585 39 1 4.5610 0.7074 0.5522 40 1 7.3433 0.2062 -0.6862 41 1 7.0645 1.1700 -2.1562 42 1 6.3884 -0.9516 -3.4131 43 1 6.7791 -1.8317 -1.9161 44 1 5.2015 -3.0191 -3.2600 45 1 3.5560 -0.0029 -2.6681 46 1 4.8750 0.9308 -3.4169 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576767638.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:35 Heat of formation + Delta-G solvation = -136.524136 kcal Electronic energy + Delta-G solvation = -28183.596554 eV Core-core repulsion = 24427.630170 eV Total energy + Delta-G solvation = -3755.966384 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.29086 -36.77916 -36.54418 -35.97280 -35.07908 -32.96381 -32.54717 -32.21784 -29.74326 -26.83105 -26.68706 -25.85185 -24.30865 -22.73521 -21.78427 -21.51078 -19.27025 -18.24895 -17.37335 -17.15012 -16.81701 -16.32329 -15.90859 -15.23801 -14.90115 -14.61853 -14.14309 -14.07847 -13.75421 -13.65894 -13.35749 -13.12547 -12.97564 -12.88943 -12.22789 -12.16762 -11.82840 -11.73263 -11.48826 -11.41020 -11.32492 -11.15095 -11.09461 -11.06412 -10.97320 -10.92591 -10.84022 -10.48373 -10.38849 -10.28872 -10.13496 -10.09902 -9.82887 -9.53267 -8.72365 -8.39382 -7.98827 -6.02360 -4.04539 1.26899 3.33157 3.41054 3.46209 3.53780 4.03027 4.16470 4.48410 4.67105 4.74540 4.84222 4.98514 5.11688 5.15308 5.31105 5.34389 5.37435 5.46029 5.50096 5.53843 5.59079 5.77232 5.79608 5.90375 5.95648 5.98863 6.01579 6.05006 6.22464 6.24596 6.27479 6.28939 6.47590 6.51634 6.69863 6.74195 6.90936 7.05316 7.29455 7.47356 7.49376 7.71352 7.96441 8.27364 8.97991 9.60048 11.06213 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017390 B = 0.005100 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.699147 B = 5489.045805 C = 5939.046855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.137 3.863 3 N -0.991 5.991 4 C 0.261 3.739 5 C -0.523 4.523 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.283 1.283 13 S 2.777 3.223 14 O -0.995 6.995 15 O -0.965 6.965 16 N -1.010 6.010 17 C 0.125 3.875 18 C -0.103 4.103 19 H 0.079 0.921 20 C -0.155 4.155 21 C -0.102 4.102 22 C -0.107 4.107 23 H 0.090 0.910 24 C 0.083 3.917 25 O -0.570 6.570 26 C 0.134 3.866 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.036 0.964 33 H 0.033 0.967 34 H 0.261 0.739 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.045 0.955 43 H 0.046 0.954 44 H 0.377 0.623 45 H 0.092 0.908 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.149 -10.019 -9.975 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.010 3.990 3 N -0.833 5.833 4 C 0.139 3.861 5 C -0.562 4.562 6 H 0.080 0.920 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.209 1.209 13 S 2.786 3.214 14 O -0.979 6.979 15 O -0.948 6.948 16 N -0.848 5.848 17 C -0.001 4.001 18 C -0.122 4.122 19 H 0.097 0.903 20 C -0.213 4.213 21 C -0.139 4.139 22 C -0.127 4.127 23 H 0.108 0.892 24 C 0.004 3.996 25 O -0.375 6.375 26 C 0.009 3.991 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.224 0.776 45 H 0.110 0.890 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.276 -8.957 -10.018 17.542 hybrid contribution -0.182 -0.143 0.334 0.407 sum 11.094 -9.100 -9.684 17.310 Atomic orbital electron populations 1.22252 0.96477 1.00744 1.03568 1.20933 0.94718 0.82318 1.01028 1.57817 1.78240 1.22911 1.24344 1.19041 0.97267 0.90764 0.78984 1.21602 0.96507 1.31369 1.06754 0.91950 1.24905 0.96712 0.96083 0.96288 1.69918 1.29164 1.40723 1.13794 0.86524 0.84048 0.79212 0.78154 1.19684 1.21081 1.20920 1.02142 0.72524 0.73635 0.73066 1.93525 1.70146 1.76424 1.57767 1.93611 1.85205 1.30336 1.85689 1.58472 1.25172 1.33263 1.67870 1.21527 0.89476 0.91371 0.97712 1.21522 0.98036 0.96758 0.95933 0.90253 1.22000 1.00722 1.02101 0.96438 1.21454 0.96504 0.96332 0.99639 1.21599 0.97281 0.94025 0.99758 0.89201 1.22199 0.89170 0.90099 0.98124 1.86536 1.37364 1.36813 1.76799 1.21271 0.99047 0.85546 0.93284 0.92922 0.93176 0.90347 0.92168 0.91273 0.94624 0.94871 0.92897 0.91719 0.88749 0.93137 0.91368 0.91579 0.91810 0.91934 0.93687 0.93581 0.77642 0.88992 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 9.83 37.16 0.37 -2.79 16 2 C 0.14 2.47 6.09 -4.04 -0.02 2.44 16 3 N -0.99 -20.61 2.59 -115.66 -0.30 -20.91 16 4 C 0.26 6.36 4.57 -5.19 -0.02 6.33 16 5 C -0.52 -14.43 8.41 -34.44 -0.29 -14.72 16 6 H 0.06 1.74 6.89 -52.49 -0.36 1.38 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -25.78 13.29 55.43 0.74 -25.04 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 S 2.78 57.37 6.01 -107.50 -0.65 56.73 16 14 O -0.99 -21.66 15.82 -57.17 -0.90 -22.56 16 15 O -0.96 -23.55 15.82 -57.17 -0.90 -24.45 16 16 N -1.01 -16.10 2.77 -113.28 -0.31 -16.41 16 17 C 0.12 1.79 5.81 -3.49 -0.02 1.77 16 18 C -0.10 -1.23 3.21 -90.28 -0.29 -1.52 16 19 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 20 C -0.16 -2.19 8.40 37.16 0.31 -1.88 16 21 C -0.10 -1.01 4.71 -26.69 -0.13 -1.13 16 22 C -0.11 -1.20 2.23 -90.50 -0.20 -1.40 16 23 H 0.09 1.15 6.34 -51.93 -0.33 0.82 16 24 C 0.08 0.73 6.43 37.16 0.24 0.97 16 25 O -0.57 -5.62 13.30 -35.23 -0.47 -6.09 16 26 C 0.13 1.81 5.49 -3.71 -0.02 1.79 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.60 6.59 -51.93 -0.34 1.25 16 30 H 0.06 0.99 7.61 -51.93 -0.40 0.59 16 31 H 0.07 1.16 8.00 -51.93 -0.42 0.75 16 32 H 0.04 0.92 7.03 -51.93 -0.36 0.56 16 33 H 0.03 0.82 8.00 -51.93 -0.42 0.41 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.57 7.12 -51.93 -0.37 1.20 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 1.12 7.44 -51.93 -0.39 0.74 16 39 H 0.07 1.00 5.58 -51.92 -0.29 0.71 16 40 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.38 1.92 9.12 45.56 0.42 2.34 16 45 H 0.09 1.38 6.97 -51.93 -0.36 1.01 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 367.53 15.07 5.54 5.54 Total: -1.00 -33.68 367.53 -9.44 -43.12 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.98 Total: 1.69 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -0.18 Total: -8.49 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: 0.12 Total: -62.36 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: -2.28 Total: -53.11 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 57.37 SS G_CDS: -0.65 Total: 56.73 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.68 -9.44 -43.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576767638.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.403 kcal (2) G-P(sol) polarization free energy of solvation -33.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds