Wall clock time and date at job start Tue Mar 31 2020 12:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47394 * 2 1 4 4 C 1.53008 * 109.46938 * 240.00505 * 2 1 3 5 5 C 1.50702 * 109.47077 * 174.99781 * 4 2 1 6 6 H 1.08004 * 119.99840 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99834 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00229 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00028 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46893 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47147 * 119.99960 * 9 7 5 12 12 H 1.48501 * 109.47093 * 239.99850 * 9 7 5 13 13 N 1.46901 * 109.47372 * 120.00647 * 2 1 3 14 14 C 1.46952 * 110.99960 * 294.99604 * 13 2 1 15 15 C 1.53052 * 109.36513 * 183.18507 * 14 13 2 16 16 N 1.46947 * 109.36642 * 301.60224 * 15 14 13 17 17 C 1.39710 * 111.00105 * 183.18646 * 16 15 14 18 18 C 1.39312 * 120.49132 * 180.02562 * 17 16 15 19 19 C 1.38492 * 118.35439 * 179.97438 * 18 17 16 20 20 C 1.38278 * 119.24263 * 0.02562 * 19 18 17 21 21 N 1.48011 * 119.53458 * 180.02562 * 20 19 18 22 22 O 1.21799 * 119.99815 * 179.97438 * 21 20 19 23 23 O 1.21799 * 119.99856 * 359.97438 * 21 20 19 24 24 N 1.31846 * 120.93096 * 359.97438 * 20 19 18 25 25 C 1.31824 * 121.79654 * 0.02562 * 24 20 19 26 26 C 1.46960 * 110.88074 * 59.31984 * 16 15 14 27 27 C 1.46956 * 110.99833 * 58.79698 * 13 2 1 28 28 H 1.08997 * 109.47394 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46653 * 299.99310 * 1 2 3 30 30 H 1.08998 * 109.47267 * 59.99100 * 1 2 3 31 31 H 1.09001 * 109.46776 * 295.00116 * 4 2 1 32 32 H 1.08998 * 109.46861 * 54.99904 * 4 2 1 33 33 H 0.96999 * 120.00027 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.49092 * 63.22049 * 14 13 2 35 35 H 1.09000 * 109.50709 * 303.17119 * 14 13 2 36 36 H 1.09004 * 109.48932 * 181.62834 * 15 14 13 37 37 H 1.09004 * 109.50414 * 61.57930 * 15 14 13 38 38 H 1.08001 * 120.82400 * 359.95926 * 18 17 16 39 39 H 1.08001 * 120.38135 * 179.97438 * 19 18 17 40 40 H 1.07997 * 119.66880 * 180.02562 * 25 24 20 41 41 H 1.08997 * 109.49056 * 60.64687 * 26 16 15 42 42 H 1.09001 * 109.48392 * 180.71226 * 26 16 15 43 43 H 1.08996 * 109.49350 * 296.77771 * 27 13 2 44 44 H 1.08999 * 109.48972 * 56.84496 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5419 -0.6148 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2302 -1.1924 -2.3586 8 7 3.5762 -1.8367 -3.3003 9 14 6.0919 -1.0612 -2.4370 10 1 6.5837 -0.2918 -1.2659 11 1 6.6852 -2.4224 -2.4202 12 1 6.4868 -0.3646 -3.6876 13 7 2.0197 -0.6926 1.1993 14 6 1.6487 0.0392 2.4185 15 6 2.2437 -0.6703 3.6371 16 7 1.7491 -2.0532 3.6854 17 6 2.2149 -2.7119 4.8261 18 6 1.8646 -4.0383 5.0689 19 6 2.3516 -4.6483 6.2130 20 6 3.1624 -3.9271 7.0701 21 7 3.6869 -4.5728 8.2943 22 8 4.4022 -3.9456 9.0549 23 8 3.4032 -5.7314 8.5410 24 7 3.4756 -2.6727 6.8117 25 6 3.0339 -2.0542 5.7346 26 6 2.1202 -2.7851 2.4663 27 6 1.5251 -2.0756 1.2476 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 1.7515 -1.7714 -1.2058 32 1 1.6053 -0.2616 -2.1370 33 1 4.0605 -2.2434 -4.0358 34 1 0.5628 0.0683 2.5089 35 1 2.0365 1.0565 2.3646 36 1 1.9457 -0.1455 4.5449 37 1 3.3310 -0.6754 3.5604 38 1 1.2288 -4.5774 4.3822 39 1 2.1003 -5.6752 6.4336 40 1 3.3124 -1.0261 5.5566 41 1 3.2060 -2.8142 2.3758 42 1 1.7321 -3.8022 2.5204 43 1 0.4379 -2.0706 1.3247 44 1 1.8232 -2.6003 0.3399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591010553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:21 Heat of formation + Delta-G solvation = 61.383553 kcal Electronic energy + Delta-G solvation = -26968.488388 eV Core-core repulsion = 23117.952726 eV Total energy + Delta-G solvation = -3850.535662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.40541 -41.25142 -39.33496 -36.84409 -36.70126 -33.46479 -33.01238 -31.96033 -31.16825 -30.21126 -27.52327 -27.14185 -25.71050 -24.87138 -23.25986 -23.12672 -22.46350 -20.65456 -19.82122 -18.98315 -18.85297 -17.77241 -17.74205 -16.94969 -16.30923 -15.76803 -15.40669 -15.35624 -14.74214 -14.71014 -14.49604 -14.27974 -14.02892 -13.85148 -13.40810 -13.11466 -12.33823 -12.22350 -12.01482 -11.84036 -11.76845 -11.52118 -11.50749 -11.28646 -11.27557 -10.98485 -10.97188 -10.78037 -10.73725 -10.50547 -10.44663 -10.19570 -10.08854 -9.33179 -9.12598 -8.65325 -8.40083 -7.77204 -6.02864 -4.01762 -0.48470 0.44488 0.98529 1.01366 2.85168 3.17775 3.27867 3.36675 3.40602 3.69062 3.96561 4.08767 4.18927 4.23425 4.44248 4.55272 4.83859 4.91847 4.94324 5.10417 5.16106 5.23402 5.32609 5.34300 5.40932 5.51360 5.58056 5.59457 5.74497 5.81717 5.86539 6.03476 6.12678 6.14390 6.28597 6.41753 6.46714 6.55856 6.77280 6.83691 7.30445 7.43690 7.57152 7.66618 7.78398 7.97501 8.41334 9.04800 9.61269 11.08764 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016036 B = 0.002934 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.636839 B = 9539.803647 C =10418.850475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.088 3.912 3 H 0.073 0.927 4 C 0.028 3.972 5 C -0.494 4.494 6 H 0.061 0.939 7 C 0.052 3.948 8 N -0.902 5.902 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.513 5.513 14 C 0.051 3.949 15 C 0.044 3.956 16 N -0.478 5.478 17 C 0.128 3.872 18 C -0.105 4.105 19 C -0.065 4.065 20 C 0.124 3.876 21 N 0.035 4.965 22 O -0.130 6.130 23 O -0.166 6.166 24 N -0.404 5.404 25 C 0.068 3.932 26 C 0.059 3.941 27 C 0.054 3.946 28 H 0.052 0.948 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.019 0.981 32 H 0.020 0.980 33 H 0.258 0.742 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.183 0.817 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.039 0.961 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.844 -1.975 15.246 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.020 4.020 3 H 0.091 0.909 4 C -0.009 4.009 5 C -0.533 4.533 6 H 0.079 0.921 7 C -0.148 4.148 8 N -0.542 5.542 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.237 5.237 14 C -0.078 4.078 15 C -0.082 4.082 16 N -0.190 5.190 17 C 0.024 3.976 18 C -0.133 4.133 19 C -0.087 4.087 20 C -0.094 4.094 21 N 0.556 4.444 22 O -0.353 6.353 23 O -0.375 6.375 24 N -0.116 5.116 25 C -0.098 4.098 26 C -0.065 4.065 27 C -0.075 4.075 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.039 0.961 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.180 0.820 39 H 0.183 0.817 40 H 0.200 0.800 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.057 0.943 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.571 -1.354 14.976 16.410 hybrid contribution 0.423 -0.490 -0.337 0.730 sum -6.148 -1.844 14.639 15.984 Atomic orbital electron populations 1.22520 0.99512 1.01397 1.00926 1.21922 0.90189 0.98537 0.91320 0.90889 1.19243 0.96493 0.95273 0.89888 1.21184 0.91669 1.33294 1.07139 0.92094 1.25005 0.98062 0.95783 0.95923 1.69963 1.35238 1.36730 1.12298 0.86598 0.86308 0.77621 0.77815 1.19798 1.21304 1.21276 1.62336 1.58913 1.01191 1.01221 1.22176 0.98318 0.97828 0.89453 1.22585 0.99680 0.86078 0.99890 1.59107 1.53924 1.04424 1.01572 1.20498 0.89657 0.93383 0.94103 1.21335 1.00923 0.93693 0.97352 1.21612 0.93231 1.02043 0.91841 1.21306 1.04620 0.92578 0.90890 1.43347 0.99130 1.00549 1.01371 1.94572 1.32053 1.64594 1.44073 1.94538 1.63123 1.00662 1.79183 1.66285 1.19401 1.07195 1.18735 1.23068 0.95372 1.01607 0.89711 1.22558 1.00790 0.96842 0.86312 1.22247 0.97014 0.90838 0.97372 0.92886 0.93964 0.92345 0.96255 0.96146 0.93241 0.94134 0.89770 0.89520 0.91451 0.81968 0.81745 0.79986 0.91566 0.89626 0.94288 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 8.49 37.16 0.32 -2.42 16 2 C 0.09 1.54 2.30 -67.71 -0.16 1.39 16 3 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16 4 C 0.03 0.64 4.27 -27.88 -0.12 0.52 16 5 C -0.49 -12.74 8.84 -34.44 -0.30 -13.05 16 6 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 7 C 0.05 1.41 5.46 -17.82 -0.10 1.31 16 8 N -0.90 -25.68 13.29 55.43 0.74 -24.94 16 9 Si 0.89 20.94 29.54 -169.99 -5.02 15.91 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.51 -7.97 4.41 -226.49 -1.00 -8.97 16 14 C 0.05 0.61 5.25 -3.77 -0.02 0.59 16 15 C 0.04 0.43 4.30 -3.77 -0.02 0.42 16 16 N -0.48 -4.81 4.76 -170.83 -0.81 -5.62 16 17 C 0.13 1.21 5.65 -83.63 -0.47 0.74 16 18 C -0.10 -0.85 9.32 -39.09 -0.36 -1.22 16 19 C -0.06 -0.58 9.59 -39.47 -0.38 -0.96 16 20 C 0.12 1.49 7.77 -146.19 -1.14 0.36 16 21 N 0.04 0.48 4.45 32.88 0.15 0.63 16 22 O -0.13 -1.97 19.02 -29.46 -0.56 -2.53 16 23 O -0.17 -2.20 18.42 -29.46 -0.54 -2.74 16 24 N -0.40 -5.03 10.03 -10.12 -0.10 -5.13 16 25 C 0.07 0.68 10.00 -17.32 -0.17 0.51 16 26 C 0.06 0.67 5.39 -3.76 -0.02 0.65 16 27 C 0.05 0.76 4.82 -3.77 -0.02 0.74 16 28 H 0.05 0.78 6.46 -51.93 -0.34 0.45 16 29 H 0.04 0.55 6.59 -51.93 -0.34 0.21 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.02 0.46 6.11 -51.93 -0.32 0.15 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.04 0.48 6.60 -51.93 -0.34 0.14 16 35 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 36 H 0.09 0.66 7.19 -51.93 -0.37 0.29 16 37 H 0.07 0.70 7.60 -51.93 -0.39 0.30 16 38 H 0.16 0.96 7.27 -52.49 -0.38 0.57 16 39 H 0.17 1.11 7.60 -52.49 -0.40 0.71 16 40 H 0.18 1.46 5.83 -52.49 -0.31 1.16 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.09 0.78 6.88 -51.93 -0.36 0.43 16 43 H 0.04 0.53 6.47 -51.93 -0.34 0.20 16 44 H 0.11 1.81 6.07 -51.93 -0.32 1.49 16 LS Contribution 354.06 15.07 5.34 5.34 Total: -1.00 -30.16 354.06 -10.63 -40.80 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -5.85 Total: -2.33 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -2.96 Total: -10.42 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: -1.03 Total: -44.03 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -1.10 Total: -5.27 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.16 -10.63 -40.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591010553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.180 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds