Wall clock time and date at job start Tue Mar 31 2020 13:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45198 * 109.47095 * 2 1 4 4 C 1.34759 * 117.00067 * 179.97438 * 3 2 1 5 5 O 1.21525 * 119.99493 * 359.97438 * 4 3 2 6 6 C 1.47281 * 120.00132 * 180.02562 * 4 3 2 7 7 C 1.38132 * 126.42725 * 270.02507 * 6 4 3 8 8 C 1.50695 * 126.29077 * 0.02562 * 7 6 4 9 9 N 1.34217 * 107.40864 * 179.74049 * 7 6 4 10 10 H 0.96998 * 125.74432 * 180.22426 * 9 7 6 11 11 N 1.39930 * 108.51699 * 0.22589 * 9 7 6 12 12 C 1.30432 * 108.91678 * 359.97438 * 11 9 7 13 13 C 1.50703 * 125.99513 * 180.02562 * 12 11 9 14 14 N 1.46901 * 109.46751 * 89.97800 * 13 12 11 15 15 C 1.46908 * 110.99598 * 170.00342 * 14 13 12 16 16 C 1.50706 * 109.46851 * 284.31433 * 15 14 13 17 17 H 1.07997 * 119.99943 * 4.66294 * 16 15 14 18 18 C 1.37872 * 119.99722 * 184.66981 * 16 15 14 19 19 N 1.31519 * 120.00151 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00007 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46828 * 89.99762 * 20 18 16 22 22 H 1.48497 * 109.47013 * 209.99843 * 20 18 16 23 23 H 1.48496 * 109.46800 * 330.00189 * 20 18 16 24 24 C 1.46897 * 111.00068 * 293.95095 * 14 13 12 25 25 C 1.53000 * 109.47251 * 163.99876 * 24 14 13 26 26 C 1.47198 * 109.47462 * 179.39952 * 25 24 14 27 27 N 8.74042 * 85.59556 * 22.20273 * 2 1 3 28 28 H 1.09004 * 109.47591 * 299.99797 * 1 2 3 29 29 H 1.09000 * 109.47252 * 60.00139 * 1 2 3 30 30 H 1.09005 * 109.47096 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47480 * 239.99706 * 2 1 3 32 32 H 1.09007 * 109.46925 * 119.99959 * 2 1 3 33 33 H 1.09008 * 109.47208 * 269.71178 * 8 7 6 34 34 H 1.09004 * 109.47359 * 149.71225 * 8 7 6 35 35 H 1.08999 * 109.47546 * 29.71067 * 8 7 6 36 36 H 1.08996 * 109.47362 * 209.97850 * 13 12 11 37 37 H 1.09007 * 109.46909 * 329.97690 * 13 12 11 38 38 H 1.09004 * 109.46803 * 44.31106 * 15 14 13 39 39 H 1.08997 * 109.46845 * 164.31294 * 15 14 13 40 40 H 0.96994 * 119.99998 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.47471 * 284.00336 * 24 14 13 42 42 H 1.08999 * 109.47019 * 44.00332 * 24 14 13 43 43 H 1.08999 * 109.47250 * 299.40236 * 25 24 14 44 44 H 1.08999 * 109.46674 * 59.39812 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3499 1.5455 0.0005 5 8 4.0901 0.5817 0.0015 6 6 3.9128 2.9065 0.0011 7 6 4.2263 3.6650 -1.1099 8 6 4.0546 3.2522 -2.5491 9 7 4.7060 4.8395 -0.6721 10 1 5.0046 5.5736 -1.2314 11 7 4.7028 4.8270 0.7272 12 6 4.2353 3.6810 1.1387 13 6 4.0641 3.2586 2.5752 14 7 2.7264 3.6453 3.0431 15 6 2.4333 3.0466 4.3523 16 6 2.1114 1.5849 4.1754 17 1 2.1965 1.1274 3.2008 18 6 1.7081 0.8320 5.2577 19 7 1.6048 1.3892 6.4445 20 14 1.3084 -0.9795 5.0384 21 1 2.5370 -1.7865 5.2499 22 1 0.2756 -1.3816 6.0267 23 1 0.7952 -1.2102 3.6642 24 6 2.5871 5.1069 3.0897 25 6 1.1053 5.4752 3.1869 26 6 0.9665 6.9393 3.2481 27 7 0.8587 8.0684 3.2931 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 4.9647 2.7640 -2.8981 34 1 3.8584 4.1339 -3.1591 35 1 3.2167 2.5599 -2.6311 36 1 4.1774 2.1772 2.6519 37 1 4.8197 3.7476 3.1902 38 1 3.3020 3.1512 5.0023 39 1 1.5800 3.5548 4.8013 40 1 1.3207 0.8596 7.2058 41 1 3.1158 5.4947 3.9605 42 1 3.0108 5.5413 2.1842 43 1 0.5786 5.0966 2.3109 44 1 0.6791 5.0319 4.0868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595393271.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:55 Heat of formation + Delta-G solvation = 12.879455 kcal Electronic energy + Delta-G solvation = -27756.934160 eV Core-core repulsion = 23904.295202 eV Total energy + Delta-G solvation = -3852.638958 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.45970 -39.60330 -37.49094 -36.12055 -36.07467 -33.13459 -32.59277 -31.98236 -31.20346 -30.53349 -27.84667 -27.22928 -25.59912 -23.88111 -23.10315 -22.09189 -20.84493 -19.91857 -19.34940 -17.81781 -17.17880 -17.00749 -16.49827 -16.02246 -15.68190 -15.33170 -14.87886 -14.60009 -14.31512 -14.22296 -13.82661 -13.71015 -13.26328 -13.15593 -12.88400 -12.83454 -12.68829 -12.53674 -12.26611 -12.06330 -12.01413 -11.60738 -11.43361 -11.34590 -11.29593 -11.10206 -10.85737 -10.73616 -10.67858 -10.35548 -10.17406 -10.14954 -9.83930 -9.48759 -9.20849 -8.62748 -8.44578 -7.43620 -6.04640 -4.05372 1.63854 2.39884 2.49410 2.64849 3.02787 3.07738 3.28340 3.31401 3.38491 3.40295 4.23524 4.38754 4.44166 4.67580 4.78144 5.12590 5.18398 5.19782 5.23394 5.31252 5.32732 5.34666 5.46014 5.53635 5.56008 5.58636 5.72836 5.93858 5.94627 6.06035 6.08658 6.17093 6.27914 6.28643 6.37483 6.52640 6.79169 7.03196 7.13776 7.23346 7.62392 7.76001 7.82959 7.95475 8.08098 8.12725 8.43959 9.01587 9.58901 11.05801 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008016 B = 0.006297 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3492.309186 B = 4445.410866 C = 6602.807348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.336 6.336 4 C 0.559 3.441 5 O -0.508 6.508 6 C -0.246 4.246 7 C 0.130 3.870 8 C -0.098 4.098 9 N -0.463 5.463 10 H 0.440 0.560 11 N -0.292 5.292 12 C 0.147 3.853 13 C 0.134 3.866 14 N -0.523 5.523 15 C 0.190 3.810 16 C -0.502 4.502 17 H 0.063 0.937 18 C 0.058 3.942 19 N -0.898 5.898 20 Si 0.891 3.109 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.271 1.271 24 C 0.056 3.944 25 C -0.027 4.027 26 C 0.222 3.778 27 N -0.462 5.462 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.048 0.952 38 H -0.005 1.005 39 H 0.042 0.958 40 H 0.261 0.739 41 H 0.035 0.965 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.922 1.704 -17.023 17.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.252 6.252 4 C 0.401 3.599 5 O -0.395 6.395 6 C -0.259 4.259 7 C -0.003 4.003 8 C -0.156 4.156 9 N -0.169 5.169 10 H 0.285 0.715 11 N -0.114 5.114 12 C -0.020 4.020 13 C 0.004 3.996 14 N -0.248 5.248 15 C 0.065 3.935 16 C -0.540 4.540 17 H 0.081 0.919 18 C -0.143 4.143 19 N -0.537 5.537 20 Si 0.718 3.282 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.196 1.196 24 C -0.074 4.074 25 C -0.067 4.067 26 C -0.095 4.095 27 N -0.140 5.140 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.123 0.877 37 H 0.066 0.934 38 H 0.013 0.987 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.132 0.868 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.006 3.964 -16.714 17.294 hybrid contribution 0.268 -1.658 0.080 1.682 sum 2.274 2.306 -16.634 16.946 Atomic orbital electron populations 1.21779 0.92766 1.02569 1.03724 1.23000 0.95446 0.80373 1.02251 1.86683 1.23504 1.31792 1.83223 1.19944 0.80601 0.88119 0.71259 1.90826 1.60842 1.42377 1.45496 1.18922 1.17606 0.96479 0.92929 1.21219 0.96384 0.86775 0.95903 1.20565 1.04196 1.02805 0.88070 1.45916 1.51395 1.13531 1.06043 0.71531 1.77163 1.25957 1.20719 0.87610 1.22504 0.93739 0.89309 0.96490 1.20499 0.91440 1.02199 0.85458 1.62042 1.24492 1.05795 1.32483 1.19893 0.96143 0.95194 0.82247 1.21087 1.44646 0.93497 0.94819 0.91863 1.24926 0.95760 0.98435 0.95171 1.69937 1.47969 1.36235 0.99594 0.86609 0.78125 0.85398 0.78019 1.20770 1.21335 1.19612 1.21962 0.93273 0.90909 1.01238 1.19372 0.99924 0.80644 1.06749 1.29431 0.92470 0.95462 0.92167 1.81103 1.09437 1.13229 1.10189 0.90514 0.92021 0.90745 0.91979 0.90783 0.89442 0.90253 0.89367 0.87728 0.93368 0.98704 0.93974 0.92912 0.94659 0.90663 0.86807 0.86494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 10.29 37.16 0.38 -1.45 16 2 C 0.06 0.92 6.20 37.16 0.23 1.15 16 3 O -0.34 -5.60 10.23 -40.65 -0.42 -6.02 16 4 C 0.56 9.68 7.12 34.41 0.24 9.93 16 5 O -0.51 -9.81 16.90 -19.29 -0.33 -10.14 16 6 C -0.25 -3.89 6.00 -105.08 -0.63 -4.52 16 7 C 0.13 1.53 7.30 -81.59 -0.60 0.94 16 8 C -0.10 -0.74 10.25 36.00 0.37 -0.37 16 9 N -0.46 -5.19 7.28 33.87 0.25 -4.95 16 10 H 0.44 3.18 8.96 -182.73 -1.64 1.55 16 11 N -0.29 -4.39 11.51 33.90 0.39 -4.00 16 12 C 0.15 2.46 5.94 -82.00 -0.49 1.97 16 13 C 0.13 2.47 5.18 -4.97 -0.03 2.45 16 14 N -0.52 -9.98 4.37 -237.50 -1.04 -11.02 16 15 C 0.19 4.36 4.59 -4.97 -0.02 4.33 16 16 C -0.50 -12.82 8.61 -34.44 -0.30 -13.11 16 17 H 0.06 1.63 7.66 -52.49 -0.40 1.23 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -25.02 13.29 55.43 0.74 -24.28 16 20 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 24 C 0.06 0.92 4.78 -3.83 -0.02 0.91 16 25 C -0.03 -0.39 5.78 -29.52 -0.17 -0.56 16 26 C 0.22 3.45 15.43 -20.79 -0.32 3.13 16 27 N -0.46 -8.09 18.53 42.12 0.78 -7.31 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 33 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.70 7.96 -51.93 -0.41 0.29 16 36 H 0.10 2.14 7.19 -51.93 -0.37 1.76 16 37 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 38 H 0.00 -0.12 8.00 -51.93 -0.42 -0.54 16 39 H 0.04 1.00 6.24 -51.93 -0.32 0.68 16 40 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.04 0.59 8.05 -51.93 -0.42 0.17 16 42 H 0.07 1.21 6.07 -51.93 -0.32 0.90 16 43 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 44 H 0.12 1.77 6.52 -51.93 -0.34 1.44 16 LS Contribution 384.12 15.07 5.79 5.79 Total: -1.00 -32.16 384.12 -7.87 -40.04 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.58 Total: 0.13 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -1.44 Total: 6.24 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 1.12 Total: -51.56 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.74 Total: -16.15 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.16 -7.87 -40.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595393271.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.916 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds