Wall clock time and date at job start Tue Mar 31 2020 13:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47150 * 2 1 4 4 C 1.34774 * 120.00072 * 274.75649 * 3 2 1 5 5 C 1.50702 * 120.00169 * 354.10719 * 4 3 2 6 6 O 1.21285 * 119.99775 * 174.10966 * 4 3 2 7 7 C 1.39572 * 119.99897 * 94.75634 * 3 2 1 8 8 C 1.39026 * 119.61861 * 240.80968 * 7 3 2 9 9 C 1.38305 * 119.17148 * 179.97438 * 8 7 3 10 10 C 1.39376 * 118.43698 * 359.97438 * 9 8 7 11 11 N 1.40151 * 120.41457 * 179.97438 * 10 9 8 12 12 C 1.34780 * 119.99852 * 34.42991 * 11 10 9 13 13 O 1.21597 * 119.99467 * 354.31492 * 12 11 10 14 14 N 1.34767 * 120.00244 * 174.31725 * 12 11 10 15 15 C 1.46502 * 120.00100 * 179.97438 * 14 12 11 16 16 H 1.08999 * 109.47394 * 325.00195 * 15 14 12 17 17 C 1.53000 * 109.47145 * 85.00254 * 15 14 12 18 18 C 1.50696 * 109.47312 * 205.00021 * 15 14 12 19 19 H 1.08006 * 119.99942 * 0.02562 * 18 15 14 20 20 C 1.37880 * 120.00209 * 179.97438 * 18 15 14 21 21 N 1.31516 * 119.99957 * 0.02562 * 20 18 15 22 22 Si 1.86802 * 119.99952 * 180.02562 * 20 18 15 23 23 H 1.48500 * 109.46962 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.46809 * 299.99860 * 22 20 18 25 25 H 1.48494 * 109.47408 * 59.99919 * 22 20 18 26 26 C 1.38682 * 119.17439 * 0.25374 * 10 9 8 27 27 N 1.31919 * 120.74809 * 359.48065 * 26 10 9 28 28 H 1.09001 * 109.47137 * 59.99557 * 1 2 3 29 29 H 1.09000 * 109.47406 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47187 * 299.99892 * 1 2 3 31 31 H 1.09002 * 109.46540 * 240.00419 * 2 1 3 32 32 H 1.08991 * 109.47272 * 120.00501 * 2 1 3 33 33 H 1.08997 * 109.47245 * 90.51999 * 5 4 3 34 34 H 1.09004 * 109.47004 * 210.52771 * 5 4 3 35 35 H 1.09002 * 109.46935 * 330.52247 * 5 4 3 36 36 H 1.07995 * 120.41866 * 359.97438 * 8 7 3 37 37 H 1.07997 * 120.78155 * 180.02562 * 9 8 7 38 38 H 0.96993 * 120.00516 * 214.42204 * 11 10 9 39 39 H 0.96999 * 120.00232 * 359.97438 * 14 12 11 40 40 H 1.09002 * 109.47132 * 300.00388 * 17 15 14 41 41 H 1.08999 * 109.47022 * 59.99714 * 17 15 14 42 42 H 1.08996 * 109.47291 * 180.02562 * 17 15 14 43 43 H 0.96997 * 119.99843 * 180.02562 * 21 20 18 44 44 H 1.07997 * 119.62691 * 179.71890 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1517 2.0488 -1.1632 5 6 1.9267 1.3356 -2.4715 6 8 2.4529 3.2237 -1.1569 7 6 2.3455 2.0057 1.2046 8 6 1.6623 3.1531 1.5914 9 6 1.9936 3.7641 2.7871 10 6 3.0058 3.2009 3.5621 11 7 3.3754 3.7862 4.7807 12 6 2.4447 4.3838 5.5510 13 8 1.3058 4.5066 5.1431 14 7 2.7764 4.8451 6.7730 15 6 1.7648 5.4951 7.6100 16 1 1.0798 6.0611 6.9787 17 6 0.9838 4.4317 8.3846 18 6 2.4405 6.4287 8.5809 19 1 3.5160 6.5283 8.5749 20 6 1.6859 7.1566 9.4763 21 7 0.3763 7.0358 9.4834 22 14 2.5235 8.3144 10.6794 23 1 1.4982 8.9732 11.5278 24 1 3.4566 7.5436 11.5400 25 1 3.2817 9.3462 9.9272 26 6 3.6468 2.0574 3.1096 27 7 3.3012 1.4982 1.9659 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 0.8794 1.4263 -2.7594 34 1 2.5554 1.7824 -3.2417 35 1 2.1827 0.2819 -2.3596 36 1 0.8826 3.5622 0.9660 37 1 1.4795 4.6562 3.1129 38 1 4.3009 3.7612 5.0699 39 1 3.6848 4.7468 7.0985 40 1 0.4950 3.7564 7.6824 41 1 1.6687 3.8658 9.0160 42 1 0.2309 4.9153 9.0070 43 1 -0.1546 7.5481 10.1130 44 1 4.4353 1.6174 3.7021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596983483.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:51 Heat of formation + Delta-G solvation = -15.210974 kcal Electronic energy + Delta-G solvation = -26411.229299 eV Core-core repulsion = 22557.372249 eV Total energy + Delta-G solvation = -3853.857050 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.10665 -40.02029 -38.77240 -36.38370 -35.24760 -34.32317 -32.59136 -32.11768 -31.26695 -30.43183 -29.16731 -27.79132 -25.29591 -24.26435 -23.57751 -23.16408 -21.45111 -20.05437 -19.83217 -18.39614 -17.79576 -17.52769 -17.12689 -16.48263 -15.91945 -15.27520 -15.09981 -14.96081 -14.57555 -14.29711 -14.20373 -14.01279 -13.67150 -13.42531 -13.34622 -13.08267 -12.84615 -12.61530 -12.57073 -12.43162 -12.11424 -11.81725 -11.45118 -11.15240 -11.04932 -10.86808 -10.56487 -10.36342 -10.27122 -10.18918 -10.16357 -9.64097 -9.55135 -9.10787 -8.93734 -8.61008 -8.20253 -7.81828 -6.16507 -4.26106 1.03253 1.34745 2.28898 2.50822 3.04977 3.23302 3.28950 3.30585 3.54307 3.88096 4.28613 4.34160 4.46717 4.55119 4.77993 4.80250 4.82507 4.94902 5.01493 5.09650 5.11139 5.16364 5.26012 5.32490 5.46176 5.53097 5.64458 5.74730 5.85987 6.17179 6.35537 6.54328 6.73432 6.91813 6.92726 6.96674 7.03741 7.14709 7.37720 7.57089 7.76148 7.82176 7.92422 7.93623 8.10207 8.65237 8.77222 9.12988 9.41796 10.89490 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030880 B = 0.002297 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.521142 B =12185.345933 C =12287.641855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 N -0.555 5.555 4 C 0.517 3.483 5 C -0.171 4.171 6 O -0.529 6.529 7 C 0.311 3.689 8 C -0.124 4.124 9 C -0.070 4.070 10 C 0.133 3.867 11 N -0.690 5.690 12 C 0.693 3.307 13 O -0.582 6.582 14 N -0.716 5.716 15 C 0.280 3.720 16 H 0.050 0.950 17 C -0.148 4.148 18 C -0.536 4.536 19 H 0.061 0.939 20 C 0.067 3.933 21 N -0.883 5.883 22 Si 0.904 3.096 23 H -0.286 1.286 24 H -0.276 1.276 25 H -0.276 1.276 26 C 0.080 3.920 27 N -0.475 5.475 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.134 0.866 37 H 0.160 0.840 38 H 0.406 0.594 39 H 0.387 0.613 40 H 0.015 0.985 41 H 0.026 0.974 42 H 0.091 0.909 43 H 0.266 0.734 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.121 -15.350 -18.542 24.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.016 4.016 3 N -0.286 5.286 4 C 0.306 3.694 5 C -0.230 4.230 6 O -0.404 6.404 7 C 0.084 3.916 8 C -0.147 4.147 9 C -0.099 4.099 10 C 0.033 3.967 11 N -0.339 5.339 12 C 0.393 3.607 13 O -0.460 6.460 14 N -0.366 5.366 15 C 0.179 3.821 16 H 0.068 0.932 17 C -0.207 4.207 18 C -0.574 4.574 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.520 5.520 22 Si 0.731 3.269 23 H -0.211 1.211 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.082 4.082 27 N -0.186 5.186 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.152 0.848 37 H 0.178 0.822 38 H 0.241 0.759 39 H 0.220 0.780 40 H 0.034 0.966 41 H 0.045 0.955 42 H 0.110 0.890 43 H 0.076 0.924 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.447 -15.227 -18.983 24.578 hybrid contribution 0.863 1.173 1.374 2.002 sum 4.310 -14.054 -17.608 22.938 Atomic orbital electron populations 1.22234 0.95274 1.02706 1.02941 1.21730 0.94530 0.81167 1.04178 1.45324 1.64408 1.15046 1.03858 1.20968 0.75985 0.87181 0.85262 1.21972 1.04999 1.01861 0.94191 1.90772 1.46363 1.15971 1.87309 1.17924 0.92950 0.92730 0.87975 1.21807 1.00176 0.96321 0.96369 1.21837 0.96473 1.00405 0.91154 1.18610 0.98095 0.93299 0.86663 1.42784 1.11605 1.60100 1.19374 1.16172 0.84235 0.78809 0.81477 1.90868 1.19132 1.62478 1.73487 1.45885 1.15131 1.61053 1.14580 1.18709 0.85740 0.89732 0.87955 0.93209 1.22106 1.00926 0.98017 0.99632 1.21156 0.93573 1.24614 1.18071 0.92081 1.24883 0.94863 0.96747 0.97185 1.69889 1.04419 1.40843 1.36835 0.86478 0.79031 0.80746 0.80657 1.21100 1.20150 1.20158 1.22199 1.01240 0.91420 0.93314 1.67026 1.12812 1.33193 1.05553 0.92249 0.90973 0.91894 0.89676 0.89322 0.88501 0.88638 0.89585 0.84798 0.82237 0.75862 0.78018 0.96597 0.95458 0.89043 0.92433 0.82265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 10.21 37.16 0.38 -0.73 16 2 C 0.11 0.78 5.94 -4.04 -0.02 0.76 16 3 N -0.55 -6.20 2.62 -115.34 -0.30 -6.50 16 4 C 0.52 5.89 7.60 -10.99 -0.08 5.80 16 5 C -0.17 -1.03 9.69 36.01 0.35 -0.68 16 6 O -0.53 -8.41 16.34 5.55 0.09 -8.32 16 7 C 0.31 4.38 5.94 -154.58 -0.92 3.47 16 8 C -0.12 -1.86 8.96 -39.26 -0.35 -2.22 16 9 C -0.07 -1.14 8.81 -39.13 -0.34 -1.49 16 10 C 0.13 1.98 6.34 -83.47 -0.53 1.45 16 11 N -0.69 -10.11 5.36 -14.09 -0.08 -10.19 16 12 C 0.69 13.51 8.40 -86.92 -0.73 12.78 16 13 O -0.58 -13.52 13.42 5.28 0.07 -13.45 16 14 N -0.72 -14.32 5.07 -59.81 -0.30 -14.62 16 15 C 0.28 6.97 2.56 -69.08 -0.18 6.79 16 16 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 17 C -0.15 -3.63 9.26 37.16 0.34 -3.28 16 18 C -0.54 -13.87 8.73 -34.44 -0.30 -14.17 16 19 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 20 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 21 N -0.88 -24.52 11.32 55.43 0.63 -23.89 16 22 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 23 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 C 0.08 1.04 11.11 -17.35 -0.19 0.84 16 27 N -0.47 -6.62 10.24 -12.19 -0.12 -6.74 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.39 5.90 -51.93 -0.31 0.08 16 32 H 0.09 0.73 7.90 -51.93 -0.41 0.32 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.32 5.99 -51.93 -0.31 0.01 16 36 H 0.13 1.92 8.01 -52.49 -0.42 1.50 16 37 H 0.16 2.91 6.24 -52.49 -0.33 2.59 16 38 H 0.41 4.41 8.84 -40.82 -0.36 4.05 16 39 H 0.39 6.53 8.56 -40.82 -0.35 6.18 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -34.06 370.27 -8.25 -42.31 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -6.12 Total: 9.51 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: -2.67 Total: 10.99 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: -0.18 Total: -61.94 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: 0.16 Total: -21.77 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.06 -8.25 -42.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596983483.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.101 kcal (2) G-P(sol) polarization free energy of solvation -34.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds