Wall clock time and date at job start Tue Mar 31 2020 13:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46509 * 109.46845 * 2 1 4 4 C 1.34773 * 119.99476 * 269.99943 * 3 2 1 5 5 C 1.50701 * 119.99666 * 184.99290 * 4 3 2 6 6 O 1.21283 * 120.00528 * 4.98764 * 4 3 2 7 7 C 1.39568 * 120.00054 * 89.99866 * 3 2 1 8 8 C 1.39024 * 119.62579 * 94.91477 * 7 3 2 9 9 C 1.38297 * 119.18151 * 179.97438 * 8 7 3 10 10 C 1.39377 * 118.43403 * 0.02562 * 9 8 7 11 11 N 1.40150 * 120.41369 * 180.02562 * 10 9 8 12 12 C 1.34777 * 120.00004 * 325.03899 * 11 10 9 13 13 O 1.21593 * 119.99746 * 4.62453 * 12 11 10 14 14 N 1.34774 * 119.99985 * 184.62709 * 12 11 10 15 15 C 1.46495 * 119.99993 * 179.97438 * 14 12 11 16 16 H 1.09000 * 109.46993 * 35.00206 * 15 14 12 17 17 C 1.52995 * 109.47311 * 275.00104 * 15 14 12 18 18 C 1.50703 * 109.47375 * 154.99862 * 15 14 12 19 19 H 1.08006 * 119.99659 * 25.06280 * 18 15 14 20 20 C 1.37869 * 120.00382 * 205.06322 * 18 15 14 21 21 N 1.31513 * 120.00038 * 185.00925 * 20 18 15 22 22 Si 1.86799 * 120.00045 * 5.01232 * 20 18 15 23 23 H 1.48508 * 109.47385 * 94.94667 * 22 20 18 24 24 H 1.48495 * 109.47214 * 214.94668 * 22 20 18 25 25 H 1.48498 * 109.47294 * 334.94924 * 22 20 18 26 26 C 1.38688 * 119.17259 * 359.97438 * 10 9 8 27 27 N 1.31917 * 120.75111 * 0.02562 * 26 10 9 28 28 H 1.09001 * 109.47251 * 299.99784 * 1 2 3 29 29 H 1.08997 * 109.47066 * 60.00702 * 1 2 3 30 30 H 1.08997 * 109.46649 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47392 * 239.99665 * 2 1 3 32 32 H 1.08997 * 109.47066 * 119.99298 * 2 1 3 33 33 H 1.08998 * 109.47634 * 94.91593 * 5 4 3 34 34 H 1.09004 * 109.46745 * 214.91408 * 5 4 3 35 35 H 1.09004 * 109.46952 * 334.90975 * 5 4 3 36 36 H 1.08000 * 120.40871 * 0.27542 * 8 7 3 37 37 H 1.07995 * 120.78233 * 180.02562 * 9 8 7 38 38 H 0.97000 * 119.99741 * 145.04062 * 11 10 9 39 39 H 0.97003 * 120.00074 * 0.02562 * 14 12 11 40 40 H 1.08999 * 109.47333 * 305.00264 * 17 15 14 41 41 H 1.09002 * 109.47526 * 65.00342 * 17 15 14 42 42 H 1.09008 * 109.47121 * 185.00036 * 17 15 14 43 43 H 0.97005 * 120.00040 * 180.02562 * 21 20 18 44 44 H 1.08002 * 119.62701 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2429 2.0166 -1.1672 5 6 2.8508 3.3955 -1.1698 6 8 1.9559 1.4785 -2.2156 7 6 2.2509 2.0393 1.2087 8 6 3.5305 2.0465 1.7521 9 6 3.7507 2.7017 2.9499 10 6 2.6732 3.3327 3.5691 11 7 2.8496 4.0092 4.7838 12 6 3.7247 3.5405 5.6953 13 8 4.4219 2.5800 5.4310 14 7 3.8269 4.1363 6.8999 15 6 4.7777 3.6264 7.8909 16 1 5.6704 3.2610 7.3835 17 6 4.1324 2.4821 8.6752 18 6 5.1571 4.7342 8.8396 19 1 4.4841 5.5641 8.9974 20 6 6.3632 4.6884 9.5059 21 7 6.6519 5.6022 10.4066 22 14 7.5872 3.3286 9.1293 23 1 8.5654 3.8084 8.1202 24 1 8.3047 2.9500 10.3731 25 1 6.8648 2.1462 8.5951 26 6 1.4244 3.2835 2.9677 27 7 1.2509 2.6490 1.8243 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 3.9298 3.3167 -1.3029 34 1 2.4256 3.9785 -1.9867 35 1 2.6367 3.8887 -0.2216 36 1 4.3436 1.5507 1.2427 37 1 4.7344 2.7240 3.3951 38 1 2.3418 4.8148 4.9684 39 1 3.2704 4.9022 7.1109 40 1 3.1930 2.8238 9.1098 41 1 3.9391 1.6452 8.0040 42 1 4.8055 2.1619 9.4706 43 1 7.5007 5.5702 10.8751 44 1 0.5842 3.7696 3.4413 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596983484.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:54 Heat of formation + Delta-G solvation = -16.823162 kcal Electronic energy + Delta-G solvation = -26543.364642 eV Core-core repulsion = 22689.437682 eV Total energy + Delta-G solvation = -3853.926960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.25895 -40.15856 -39.05448 -36.34950 -35.29421 -34.44751 -32.66149 -32.41947 -31.85811 -30.23393 -29.35928 -28.28510 -25.36841 -24.09977 -23.80518 -23.37517 -21.57920 -20.18846 -20.05087 -18.74101 -17.77677 -17.61726 -17.03401 -16.75374 -16.35253 -15.36231 -15.32453 -15.08105 -14.73552 -14.37536 -14.11632 -14.04491 -13.84750 -13.47122 -13.29356 -13.25621 -12.90447 -12.76774 -12.66840 -12.41823 -12.30984 -12.13773 -11.74074 -11.29502 -11.25795 -10.94671 -10.86910 -10.61495 -10.33460 -10.15133 -10.00492 -9.87046 -9.62504 -9.31753 -9.09459 -8.80884 -8.53532 -8.13482 -6.31796 -4.35626 0.73295 1.08978 2.23975 2.51270 2.81981 3.18527 3.27901 3.28618 3.34609 3.64306 4.08988 4.24260 4.40373 4.55953 4.71076 4.82309 4.83709 4.93650 5.03128 5.05355 5.09652 5.17750 5.20441 5.37454 5.43339 5.51817 5.68389 5.73135 5.95265 6.03438 6.10295 6.20735 6.25177 6.41771 6.57242 6.63026 6.71884 6.93063 7.09948 7.20066 7.27777 7.41295 7.66525 7.83096 8.11123 8.45847 8.67275 8.87433 9.29153 10.79853 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026834 B = 0.002494 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.185548 B =11223.076891 C =11324.656432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.115 3.885 3 N -0.558 5.558 4 C 0.528 3.472 5 C -0.173 4.173 6 O -0.537 6.537 7 C 0.301 3.699 8 C -0.135 4.135 9 C -0.071 4.071 10 C 0.141 3.859 11 N -0.689 5.689 12 C 0.693 3.307 13 O -0.585 6.585 14 N -0.709 5.709 15 C 0.250 3.750 16 H 0.051 0.949 17 C -0.151 4.151 18 C -0.535 4.535 19 H 0.079 0.921 20 C 0.082 3.918 21 N -0.888 5.888 22 Si 0.870 3.130 23 H -0.275 1.275 24 H -0.284 1.284 25 H -0.255 1.255 26 C 0.081 3.919 27 N -0.462 5.462 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.139 0.861 37 H 0.161 0.839 38 H 0.409 0.591 39 H 0.393 0.607 40 H 0.045 0.955 41 H 0.029 0.971 42 H 0.055 0.945 43 H 0.268 0.732 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.634 -4.627 -17.345 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.006 4.006 3 N -0.291 5.291 4 C 0.318 3.682 5 C -0.233 4.233 6 O -0.413 6.413 7 C 0.074 3.926 8 C -0.158 4.158 9 C -0.100 4.100 10 C 0.041 3.959 11 N -0.337 5.337 12 C 0.394 3.606 13 O -0.464 6.464 14 N -0.360 5.360 15 C 0.147 3.853 16 H 0.069 0.931 17 C -0.210 4.210 18 C -0.573 4.573 19 H 0.097 0.903 20 C -0.123 4.123 21 N -0.524 5.524 22 Si 0.696 3.304 23 H -0.201 1.201 24 H -0.210 1.210 25 H -0.179 1.179 26 C -0.081 4.081 27 N -0.173 5.173 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.157 0.843 37 H 0.178 0.822 38 H 0.245 0.755 39 H 0.227 0.773 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.785 -5.743 -18.258 21.496 hybrid contribution 0.941 0.214 0.775 1.238 sum -8.844 -5.530 -17.483 20.358 Atomic orbital electron populations 1.22105 0.95304 1.02016 1.02973 1.21533 0.95181 0.80715 1.03199 1.45297 1.66560 1.13878 1.03322 1.20826 0.77165 0.87888 0.82370 1.21918 1.02941 0.93600 1.04824 1.90713 1.51764 1.68149 1.30690 1.17931 0.89290 0.96615 0.88734 1.22043 0.97229 1.00428 0.96123 1.21845 1.00452 0.95333 0.92347 1.18696 0.94199 0.96274 0.86716 1.42802 1.45583 1.29908 1.15439 1.16195 0.80459 0.83034 0.80936 1.90870 1.46867 1.29396 1.79227 1.45804 1.43520 1.33924 1.12728 1.19090 0.87503 0.93213 0.85518 0.93108 1.22311 1.00799 0.98136 0.99736 1.20972 1.04660 1.07349 1.24275 0.90303 1.24864 0.97548 0.95696 0.94188 1.69878 1.23820 1.34448 1.24239 0.86955 0.81766 0.83355 0.78298 1.20050 1.20950 1.17856 1.22353 0.94599 0.98916 0.92199 1.67240 1.34265 1.07249 1.08532 0.91777 0.92203 0.91748 0.89407 0.90430 0.88454 0.88682 0.90321 0.84292 0.82187 0.75503 0.77340 0.93543 0.95168 0.92590 0.92170 0.82066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 10.24 37.16 0.38 -1.21 16 2 C 0.12 1.14 6.08 -4.03 -0.02 1.11 16 3 N -0.56 -6.10 2.58 -115.34 -0.30 -6.40 16 4 C 0.53 6.11 7.74 -10.99 -0.09 6.03 16 5 C -0.17 -1.48 9.80 36.01 0.35 -1.12 16 6 O -0.54 -7.83 16.73 5.55 0.09 -7.74 16 7 C 0.30 3.32 4.28 -154.58 -0.66 2.66 16 8 C -0.14 -1.44 9.91 -39.27 -0.39 -1.83 16 9 C -0.07 -0.88 8.80 -39.14 -0.34 -1.22 16 10 C 0.14 1.64 6.32 -83.46 -0.53 1.11 16 11 N -0.69 -8.20 5.36 -14.09 -0.08 -8.28 16 12 C 0.69 11.65 8.39 -86.92 -0.73 10.92 16 13 O -0.59 -11.82 13.48 5.28 0.07 -11.75 16 14 N -0.71 -12.57 5.07 -59.82 -0.30 -12.88 16 15 C 0.25 5.49 2.09 -69.09 -0.14 5.35 16 16 H 0.05 1.23 5.16 -51.93 -0.27 0.96 16 17 C -0.15 -3.12 9.05 37.16 0.34 -2.79 16 18 C -0.53 -13.50 9.06 -34.44 -0.31 -13.82 16 19 H 0.08 2.10 8.02 -52.48 -0.42 1.68 16 20 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 21 N -0.89 -25.15 13.96 55.43 0.77 -24.38 16 22 Si 0.87 20.34 26.34 -169.99 -4.48 15.86 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.25 -5.81 5.97 56.52 0.34 -5.47 16 26 C 0.08 0.83 11.11 -17.35 -0.19 0.63 16 27 N -0.46 -5.26 10.38 -12.19 -0.13 -5.38 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.86 7.50 -51.93 -0.39 0.47 16 32 H 0.08 0.69 8.05 -51.93 -0.42 0.27 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.67 6.75 -51.93 -0.35 0.32 16 36 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.16 2.28 6.31 -52.49 -0.33 1.95 16 38 H 0.41 3.44 8.84 -40.82 -0.36 3.08 16 39 H 0.39 5.92 8.58 -40.82 -0.35 5.57 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 1.18 6.90 -51.92 -0.36 0.83 16 43 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 369.95 15.07 5.58 5.58 Total: -1.00 -32.39 369.95 -7.46 -39.84 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.25 Total: 7.61 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -2.44 Total: 7.90 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.03 Total: -57.31 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: 0.16 Total: -19.48 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.48 Total: 15.86 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.39 -7.46 -39.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596983484.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.021 kcal (2) G-P(sol) polarization free energy of solvation -32.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds